This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276291 (54 seq.)
>W1710934448
LOJI01000001
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
324790
324866
+
Ile
GAT
[ENA]
¡û
>W1710934485
LOJJ01000001
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
236537
236613
+
Ile
GAT
[ENA]
¡û
>W1711147333
LVJO01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVJO]
38418
38494
+
Ile
GAT
[ENA]
¡û
>W1711149041
LVLD01000001
Betaproteobacteria
Polynucleobacter asymbioticus P1-KOL8 [LVLD]
38418
38494
+
Ile
GAT
[ENA]
¡û
>W1711149078
LVLE01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLE]
38418
38494
+
Ile
GAT
[ENA]
¡û
>W1711149114
LVLF01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLF]
68406
68482
+
Ile
GAT
[ENA]
¡û
>W1711149152
LVLG01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLG]
38418
38494
+
Ile
GAT
[ENA]
¡û
>W1711272410
LZFI01000001
Betaproteobacteria
Polynucleobacter sp. MWH-Adler-W8 [LZFI]
76999
77075
+
Ile
GAT
[ENA]
¡û
>W1711282003
LZMQ01000004
Betaproteobacteria
Polynucleobacter sp. QLW-P1DATA-2 [LZMQ]
24665
24589
-
Ile
GAT
[ENA]
¡û
>W1711282013
LZMR01000002
Betaproteobacteria
Polynucleobacter sp. MWH-Tro8-2-5-gr [LZMR]
21643
21719
+
Ile
GAT
[ENA]
¡û
>W1711301904
MAIK01000092
Betaproteobacteria
Polynucleobacter necessarius [MAIK]
700
776
+
Ile
GAT
[ENA]
¡û
>W131220804
ATZV01000038
Betaproteobacteria
beta proteobacterium SCGC AAA027-C02 [ATZV]
9512
9436
-
Ile
GAT
[ENA]
¡û
>W1711625790
MPIY01000017
Betaproteobacteria
Polynucleobacter sphagniphilus MWH-Weng1-1 [MPIY]
200406
200482
+
Ile
GAT
[ENA]
¡û
>W1711932787
NAIA01000001
Betaproteobacteria
Polynucleobacter hirudinilacicola MWH-EgelM1-30-B4 [NAIA]
399837
399913
+
Ile
GAT
[ENA]
¡û
>W1712077008
NGUO01000002
Betaproteobacteria
Polynucleobacter aenigmaticus MWH-K35W1 [NGUO]
273378
273454
+
Ile
GAT
[ENA]
¡û
>W1712077055
NGUP01000003
Betaproteobacteria
Polynucleobacter campilacus MWH-Feld-100 [NGUP]
625765
625841
+
Ile
GAT
[ENA]
¡û
>C171035097
CP015016
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKolB [CP015016]
77885
77961
+
Ile
GAT
-
¡û
>C171035136
CP015017
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKol4 [CP015017]
77885
77961
+
Ile
GAT
-
¡û
>C171035174
CP015018
Betaproteobacteria
Polynucleobacter asymbioticus Tro8F10W22 [CP015018]
38418
38494
+
Ile
GAT
-
¡û
>C017366
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
38418
38494
+
Ile
GAT
[Ensembl]
¡û
>WENV016706
AACY020468619
Marine microbial communities from Global Ocean Sampling (GOS)
411
487
+
Ile
GAT
[ENA]
>WENV016899
AACY020471861
Marine microbial communities from Global Ocean Sampling (GOS)
1314
1238
-
Ile
GAT
[ENA]
>WENV181843167
OGVU01001830
[OGVU] freshwater metagenome; freshwater
2326
2250
-
Ile
GAT
[ENA]
¢þ
>C08007604
CP001010
Betaproteobacteria
Polynucleobacter necessarius [CP001010]
35546
35622
+
Ile
GAT
[Ensembl]
¡û
>WENV170617763
FUWD012936330
[FUWD] metagenome; unknown
349
425
+
Ile
GAT
[ENA]
¢þ
>C181187668
CP030086
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-Creno-4B4 [CP030086]
34376
34452
+
Ile
GAT
-
¡û
>C181218882
LT606946
Betaproteobacteria
Polynucleobacter necessarius [LT606946]
1833411
1833487
+
Ile
GAT
-
¡û
>C181218986
LT606950
Betaproteobacteria
Polynucleobacter necessarius [LT606950]
1528720
1528796
+
Ile
GAT
-
¡û
>C181219038
LT606951
Betaproteobacteria
Polynucleobacter necessarius [LT606951]
3933
3857
-
Ile
GAT
-
¡û
>C181219091
LT615228
Betaproteobacteria
Polynucleobacter necessarius [LT615228]
1552994
1553070
+
Ile
GAT
-
¡û
>C141003778
CP004348
Betaproteobacteria
beta proteobacterium CB [CP004348]
34520
34596
+
Ile
GAT
[Ensembl]
¡û
>W1911490744
OANS01000003
Betaproteobacteria
Polynucleobacter meluiroseus AP-Melu-1000-B4 [OANS]
89104
89180
+
Ile
GAT
[ENA]
¡û
>W1810102000
PGTX01000002
Betaproteobacteria
Polynucleobacter brandtiae UB-Domo-W1 [PGTX]
339847
339771
-
Ile
GAT
[ENA]
¡û
>W1810699134
QMCG01000001
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-UK1W16 [QMCG]
409002
409078
+
Ile
GAT
[ENA]
¡û
>W1810699172
QMCH01000001
Betaproteobacteria
Polynucleobacter paneuropaeus FUKU-NW-11 [QMCH]
271038
271114
+
Ile
GAT
[ENA]
¡û
>C151025632
CP007501
Betaproteobacteria
Polynucleobacter duraquae MWH-MoK4 [CP007501]
33819
33895
+
Ile
GAT
[Ensembl]
¡û
>C161092364
CP015922
Betaproteobacteria
Polynucleobacter wuianus QLW-P1FAT50C-4 [CP015922]
35416
35492
+
Ile
GAT
[Ensembl]
¡û
>W1610791979
LOJI01000001
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
324790
324866
+
Ile
GAT
[ENA]
¡û
>W1610792016
LOJJ01000001
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
236537
236613
+
Ile
GAT
[ENA]
¡û
>W1611052744
MAIK01000092
Betaproteobacteria
Polynucleobacter necessarius [MAIK]
700
776
+
Ile
GAT
[ENA]
¡û
>ENV000690
AJ879780
Environmental sample from ENV division of INSDC
1551
1627
+
Ile
GAT
[ENA]
>ENV000692
AJ879782
Environmental sample from ENV division of INSDC
67
143
+
Ile
GAT
[ENA]
>ENV000694
AJ879785
Environmental sample from ENV division of INSDC
1551
1627
+
Ile
GAT
[ENA]
>ENV000696
AJ879786
Environmental sample from ENV division of INSDC
1551
1627
+
Ile
GAT
[ENA]
>ENV000698
AJ879787
Environmental sample from ENV division of INSDC
1551
1627
+
Ile
GAT
[ENA]
>ENV000700
AJ879788
Environmental sample from ENV division of INSDC
66
142
+
Ile
GAT
[ENA]
>ENV000702
AJ879789
Environmental sample from ENV division of INSDC
66
142
+
Ile
GAT
[ENA]
>ENV000706
AJ879791
Environmental sample from ENV division of INSDC
66
142
+
Ile
GAT
[ENA]
>ENV000708
AJ879792
Environmental sample from ENV division of INSDC
66
142
+
Ile
GAT
[ENA]
>ENV000710
AJ879793
Environmental sample from ENV division of INSDC
1552
1628
+
Ile
GAT
[ENA]
>ENV000712
AJ879794
Environmental sample from ENV division of INSDC
1552
1628
+
Ile
GAT
[ENA]
>ENV000714
AJ879795
Environmental sample from ENV division of INSDC
1552
1628
+
Ile
GAT
[ENA]
>ENV000716
AJ879796
Environmental sample from ENV division of INSDC
66
142
+
Ile
GAT
[ENA]
>ENV000718
AJ879797
Environmental sample from ENV division of INSDC
67
143
+
Ile
GAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK