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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276294 (61 seq.)
>W1710934477
LOJI01000035
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
142315
142239
-
Pro
TGG
[ENA]
¡û
>W1710934499
LOJJ01000003
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
163247
163323
+
Pro
TGG
[ENA]
¡û
>W1711147356
LVJO01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVJO]
1006150
1006074
-
Pro
TGG
[ENA]
¡û
>W1711149065
LVLD01000007
Betaproteobacteria
Polynucleobacter asymbioticus P1-KOL8 [LVLD]
653187
653111
-
Pro
TGG
[ENA]
¡û
>W1711149101
LVLE01000005
Betaproteobacteria
Polynucleobacter asymbioticus [LVLE]
687408
687332
-
Pro
TGG
[ENA]
¡û
>W1711149138
LVLF01000005
Betaproteobacteria
Polynucleobacter asymbioticus [LVLF]
443677
443601
-
Pro
TGG
[ENA]
¡û
>W1711149175
LVLG01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLG]
1137044
1136968
-
Pro
TGG
[ENA]
¡û
>W1711272429
LZFI01000002
Betaproteobacteria
Polynucleobacter sp. MWH-Adler-W8 [LZFI]
404702
404626
-
Pro
TGG
[ENA]
¡û
>W1711281996
LZMQ01000003
Betaproteobacteria
Polynucleobacter sp. QLW-P1DATA-2 [LZMQ]
523083
523007
-
Pro
TGG
[ENA]
¡û
>W1711282042
LZMR01000004
Betaproteobacteria
Polynucleobacter sp. MWH-Tro8-2-5-gr [LZMR]
545577
545501
-
Pro
TGG
[ENA]
¡û
>W1711421594
MHZG01000002
Betaproteobacteria
Polynucleobacter sp. GWA2_45_21 [MHZG]
304952
305028
+
Pro
TGG
[ENA]
¡û
>W1711625764
MPIY01000001
Betaproteobacteria
Polynucleobacter sphagniphilus MWH-Weng1-1 [MPIY]
414240
414316
+
Pro
TGG
[ENA]
¡û
>W1711932815
NAIA01000003
Betaproteobacteria
Polynucleobacter hirudinilacicola MWH-EgelM1-30-B4 [NAIA]
856404
856328
-
Pro
TGG
[ENA]
¡û
>W1712077022
NGUO01000008
Betaproteobacteria
Polynucleobacter aenigmaticus MWH-K35W1 [NGUO]
33785
33861
+
Pro
TGG
[ENA]
¡û
>W1712077067
NGUP01000003
Betaproteobacteria
Polynucleobacter campilacus MWH-Feld-100 [NGUP]
5589
5513
-
Pro
TGG
[ENA]
¡û
>C171035130
CP015016
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKolB [CP015016]
1161926
1161850
-
Pro
TGG
-
¡û
>C171035168
CP015017
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKol4 [CP015017]
1180759
1180683
-
Pro
TGG
-
¡û
>C171035206
CP015018
Betaproteobacteria
Polynucleobacter asymbioticus Tro8F10W22 [CP015018]
1096755
1096679
-
Pro
TGG
-
¡û
>W131220819
ATZV01000064
Betaproteobacteria
beta proteobacterium SCGC AAA027-C02 [ATZV]
33427
33503
+
Pro
TGG
[ENA]
¡û
>C017397
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
1006150
1006074
-
Pro
TGG
[Ensembl]
¡û
>WENV180377735
OBON01105564
[OBON] marine metagenome; sea water
155
231
+
Pro
TGG
[ENA]
¢þ
>WENV180391105
OBPM01010274
[OBPM] marine metagenome; ENVO:00002010
481
557
+
Pro
TGG
[ENA]
¢þ
>WENV181367410
OFQB01000509
[OFQB] freshwater metagenome; Freshwater Lake
2139
2215
+
Pro
TGG
[ENA]
¢þ
>WENV181368184
OFQK01001661
[OFQK] freshwater metagenome; Freshwater Lake
758
682
-
Pro
TGG
[ENA]
¢þ
>WENV181368353
OFQL01001069
[OFQL] freshwater metagenome; Freshwater Lake
900
824
-
Pro
TGG
[ENA]
¢þ
>WENV181369271
OFQP01000059
[OFQP] freshwater metagenome; Freshwater Lake
3962
3886
-
Pro
TGG
[ENA]
¢þ
>WENV181369875
OFQR01001241
[OFQR] freshwater metagenome; Freshwater Lake
2189
2265
+
Pro
TGG
[ENA]
¢þ
>WENV181370179
OFQS01000292
[OFQS] freshwater metagenome; Freshwater Lake
6743
6819
+
Pro
TGG
[ENA]
¢þ
>WENV181370587
OFQT01000501
[OFQT] freshwater metagenome; Freshwater Lake
3919
3843
-
Pro
TGG
[ENA]
¢þ
>WENV181395688
OFSB01000341
[OFSB] freshwater metagenome; Freshwater Lake
2475
2551
+
Pro
TGG
[ENA]
¢þ
>WENV181844096
OGVV01009025
[OGVV] freshwater metagenome; freshwater
785
861
+
Pro
TGG
[ENA]
¢þ
>WENV181849014
OGVZ01041631
[OGVZ] freshwater metagenome; freshwater
383
307
-
Pro
TGG
[ENA]
¢þ
>WENV181854046
OGWJ01006730
[OGWJ] freshwater metagenome; freshwater
748
672
-
Pro
TGG
[ENA]
¢þ
>C08007619
CP001010
Betaproteobacteria
Polynucleobacter necessarius [CP001010]
741670
741746
+
Pro
TGG
[Ensembl]
¡û
>WENV170599730
FUWD010088955
[FUWD] metagenome; unknown
646
570
-
Pro
TGG
[ENA]
¢þ
>WENV170617406
FUWD012925174
[FUWD] metagenome; unknown
480
404
-
Pro
TGG
[ENA]
¢þ
>WENV170617408
FUWD012925175
[FUWD] metagenome; unknown
194
118
-
Pro
TGG
[ENA]
¢þ
>WENV170619936
FUWD013023157
[FUWD] metagenome; unknown
91
15
-
Pro
TGG
[ENA]
¢þ
>WENV170628059
FUWD013241254
[FUWD] metagenome; unknown
91
15
-
Pro
TGG
[ENA]
¢þ
>C181078379
CP023276
Betaproteobacteria
Polynucleobacter difficilis AM-8B5 [CP023276]
787467
787543
+
Pro
TGG
-
¡û
>C181187692
CP030086
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-Creno-4B4 [CP030086]
930700
930624
-
Pro
TGG
-
¡û
>C181218870
LT606946
Betaproteobacteria
Polynucleobacter necessarius [LT606946]
740361
740437
+
Pro
TGG
-
¡û
>C181218905
LT606947
Betaproteobacteria
Polynucleobacter necessarius [LT606947]
464725
464801
+
Pro
TGG
-
¡û
>C181218964
LT606949
Betaproteobacteria
Polynucleobacter necessarius [LT606949]
855709
855633
-
Pro
TGG
-
¡û
>C181218999
LT606950
Betaproteobacteria
Polynucleobacter necessarius [LT606950]
704235
704159
-
Pro
TGG
-
¡û
>C181219019
LT606951
Betaproteobacteria
Polynucleobacter necessarius [LT606951]
980110
980186
+
Pro
TGG
-
¡û
>C181219067
LT615227
Betaproteobacteria
Polynucleobacter necessarius [LT615227]
1547597
1547521
-
Pro
TGG
-
¡û
>C181219110
LT615228
Betaproteobacteria
Polynucleobacter necessarius [LT615228]
635449
635373
-
Pro
TGG
-
¡û
>W09106284
AAUC01000004
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [AAUC]
135158
135082
-
Pro
TGG
[ENA]
¡û
>W09107514
ABJA01000001
Betaproteobacteria
Polynucleobacter necessarius STIR1 [ABJA]
851878
851802
-
Pro
TGG
[ENA]
¡û
>C141003793
CP004348
Betaproteobacteria
beta proteobacterium CB [CP004348]
803730
803806
+
Pro
TGG
[Ensembl]
¡û
>W1911490762
OANS01000005
Betaproteobacteria
Polynucleobacter meluiroseus AP-Melu-1000-B4 [OANS]
133597
133673
+
Pro
TGG
[ENA]
¡û
>W1810102016
PGTX01000005
Betaproteobacteria
Polynucleobacter brandtiae UB-Domo-W1 [PGTX]
1469
1393
-
Pro
TGG
[ENA]
¡û
>W1810699149
QMCG01000001
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-UK1W16 [QMCG]
1374280
1374204
-
Pro
TGG
[ENA]
¡û
>W1810699196
QMCH01000003
Betaproteobacteria
Polynucleobacter paneuropaeus FUKU-NW-11 [QMCH]
637610
637534
-
Pro
TGG
[ENA]
¡û
>C151025647
CP007501
Betaproteobacteria
Polynucleobacter duraquae MWH-MoK4 [CP007501]
809280
809356
+
Pro
TGG
[Ensembl]
¡û
>C161092376
CP015922
Betaproteobacteria
Polynucleobacter wuianus QLW-P1FAT50C-4 [CP015922]
966016
966092
+
Pro
TGG
[Ensembl]
¡û
>WENV057509
AACY023297084
Marine microbial communities from Global Ocean Sampling (GOS)
896
974
+
Pro
TGG
[ENA]
>WENV057825
AACY023307996
Marine microbial communities from Global Ocean Sampling (GOS)
1082
1160
+
Pro
TGG
[ENA]
>W1610792008
LOJI01000035
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
142315
142239
-
Pro
TGG
[ENA]
¡û
>W1610792030
LOJJ01000003
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
163247
163323
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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