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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276295 (30 seq.)
>W1711147357
LVJO01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVJO]
1006037
1005961
-
Arg
TCT
[ENA]
¡û
>W1711149066
LVLD01000007
Betaproteobacteria
Polynucleobacter asymbioticus P1-KOL8 [LVLD]
653074
652998
-
Arg
TCT
[ENA]
¡û
>W1711149102
LVLE01000005
Betaproteobacteria
Polynucleobacter asymbioticus [LVLE]
687295
687219
-
Arg
TCT
[ENA]
¡û
>W1711149139
LVLF01000005
Betaproteobacteria
Polynucleobacter asymbioticus [LVLF]
443564
443488
-
Arg
TCT
[ENA]
¡û
>W1711149176
LVLG01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLG]
1136931
1136855
-
Arg
TCT
[ENA]
¡û
>W1711272430
LZFI01000002
Betaproteobacteria
Polynucleobacter sp. MWH-Adler-W8 [LZFI]
404589
404513
-
Arg
TCT
[ENA]
¡û
>W1711281997
LZMQ01000003
Betaproteobacteria
Polynucleobacter sp. QLW-P1DATA-2 [LZMQ]
522970
522894
-
Arg
TCT
[ENA]
¡û
>W1711282043
LZMR01000004
Betaproteobacteria
Polynucleobacter sp. MWH-Tro8-2-5-gr [LZMR]
545464
545388
-
Arg
TCT
[ENA]
¡û
>W1711932816
NAIA01000003
Betaproteobacteria
Polynucleobacter hirudinilacicola MWH-EgelM1-30-B4 [NAIA]
856291
856215
-
Arg
TCT
[ENA]
¡û
>W1712077068
NGUP01000003
Betaproteobacteria
Polynucleobacter campilacus MWH-Feld-100 [NGUP]
5476
5400
-
Arg
TCT
[ENA]
¡û
>C171035131
CP015016
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKolB [CP015016]
1161813
1161737
-
Arg
TCT
-
¡û
>C171035169
CP015017
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKol4 [CP015017]
1180646
1180570
-
Arg
TCT
-
¡û
>C171035207
CP015018
Betaproteobacteria
Polynucleobacter asymbioticus Tro8F10W22 [CP015018]
1096642
1096566
-
Arg
TCT
-
¡û
>W131220820
ATZV01000064
Betaproteobacteria
beta proteobacterium SCGC AAA027-C02 [ATZV]
39262
39338
+
Arg
TCT
[ENA]
¡û
>C017398
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
1006037
1005961
-
Arg
TCT
[Ensembl]
¡û
>WENV180111473
OAPN01089277
[OAPN] marine metagenome; 2011
268
344
+
Arg
TCT
[ENA]
¢þ
>WENV180377736
OBON01105564
[OBON] marine metagenome; sea water
268
344
+
Arg
TCT
[ENA]
¢þ
>WENV181368325
OFQL01000719
[OFQL] freshwater metagenome; Freshwater Lake
2693
2769
+
Arg
TCT
[ENA]
¢þ
>WENV181368814
OFQN01000812
[OFQN] freshwater metagenome; Freshwater Lake
147
71
-
Arg
TCT
[ENA]
¢þ
>WENV181369272
OFQP01000059
[OFQP] freshwater metagenome; Freshwater Lake
186
110
-
Arg
TCT
[ENA]
¢þ
>WENV181370237
OFQS01000985
[OFQS] freshwater metagenome; Freshwater Lake
607
531
-
Arg
TCT
[ENA]
¢þ
>WENV181370588
OFQT01000501
[OFQT] freshwater metagenome; Freshwater Lake
141
65
-
Arg
TCT
[ENA]
¢þ
>WENV181395689
OFSB01000341
[OFSB] freshwater metagenome; Freshwater Lake
6252
6328
+
Arg
TCT
[ENA]
¢þ
>C181187693
CP030086
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-Creno-4B4 [CP030086]
930587
930511
-
Arg
TCT
-
¡û
>C181219068
LT615227
Betaproteobacteria
Polynucleobacter necessarius [LT615227]
1547485
1547409
-
Arg
TCT
-
¡û
>W09106285
AAUC01000004
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [AAUC]
135045
134969
-
Arg
TCT
[ENA]
¡û
>W1911490763
OANS01000005
Betaproteobacteria
Polynucleobacter meluiroseus AP-Melu-1000-B4 [OANS]
133711
133787
+
Arg
TCT
[ENA]
¡û
>W1810699150
QMCG01000001
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-UK1W16 [QMCG]
1374168
1374092
-
Arg
TCT
[ENA]
¡û
>W1810699197
QMCH01000003
Betaproteobacteria
Polynucleobacter paneuropaeus FUKU-NW-11 [QMCH]
637498
637422
-
Arg
TCT
[ENA]
¡û
>C151025648
CP007501
Betaproteobacteria
Polynucleobacter duraquae MWH-MoK4 [CP007501]
809393
809469
+
Arg
TCT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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