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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276296 (58 seq.)
>W1710934457
LOJI01000001
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
55048
54972
-
Met
CAT
[ENA]
¡û
>W1710934518
LOJJ01000009
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
77765
77841
+
Met
CAT
[ENA]
¡û
>W1711147366
LVJO01000026
Betaproteobacteria
Polynucleobacter asymbioticus [LVJO]
798928
798852
-
Met
CAT
[ENA]
¡û
>W1711149077
LVLD01000019
Betaproteobacteria
Polynucleobacter asymbioticus P1-KOL8 [LVLD]
612686
612610
-
Met
CAT
[ENA]
¡û
>W1711149113
LVLE01000025
Betaproteobacteria
Polynucleobacter asymbioticus [LVLE]
598854
598778
-
Met
CAT
[ENA]
¡û
>W1711149147
LVLF01000013
Betaproteobacteria
Polynucleobacter asymbioticus [LVLF]
733820
733744
-
Met
CAT
[ENA]
¡û
>W1711149188
LVLG01000007
Betaproteobacteria
Polynucleobacter asymbioticus [LVLG]
621510
621434
-
Met
CAT
[ENA]
¡û
>W1711272434
LZFI01000003
Betaproteobacteria
Polynucleobacter sp. MWH-Adler-W8 [LZFI]
199949
200025
+
Met
CAT
[ENA]
¡û
>W1711281975
LZMQ01000001
Betaproteobacteria
Polynucleobacter sp. QLW-P1DATA-2 [LZMQ]
218848
218924
+
Met
CAT
[ENA]
¡û
>W1711282048
LZMR01000007
Betaproteobacteria
Polynucleobacter sp. MWH-Tro8-2-5-gr [LZMR]
173674
173598
-
Met
CAT
[ENA]
¡û
>W1711421584
MHZG01000001
Betaproteobacteria
Polynucleobacter sp. GWA2_45_21 [MHZG]
494212
494136
-
Met
CAT
[ENA]
¡û
>W1711625779
MPIY01000003
Betaproteobacteria
Polynucleobacter sphagniphilus MWH-Weng1-1 [MPIY]
325391
325467
+
Met
CAT
[ENA]
¡û
>W1711932820
NAIA01000003
Betaproteobacteria
Polynucleobacter hirudinilacicola MWH-EgelM1-30-B4 [NAIA]
338581
338505
-
Met
CAT
[ENA]
¡û
>W131220811
ATZV01000053
Betaproteobacteria
beta proteobacterium SCGC AAA027-C02 [ATZV]
30896
30820
-
Met
CAT
[ENA]
¡û
>C017390
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
1923874
1923798
-
Met
CAT
[Ensembl]
¡û
>C171035123
CP015016
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKolB [CP015016]
2089584
2089508
-
Met
CAT
-
¡û
>C171035161
CP015017
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKol4 [CP015017]
2107037
2106961
-
Met
CAT
-
¡û
>C171035198
CP015018
Betaproteobacteria
Polynucleobacter asymbioticus Tro8F10W22 [CP015018]
1994303
1994227
-
Met
CAT
-
¡û
>WENV180111153
OAPN01034386
[OAPN] marine metagenome; 2011
166
242
+
Met
CAT
[ENA]
¢þ
>WENV180391160
OBPM01024654
[OBPM] marine metagenome; ENVO:00002010
188
264
+
Met
CAT
[ENA]
¢þ
>WENV181367399
OFQB01000341
[OFQB] freshwater metagenome; Freshwater Lake
790
866
+
Met
CAT
[ENA]
¢þ
>WENV181368439
OFQL01005048
[OFQL] freshwater metagenome; Freshwater Lake
633
557
-
Met
CAT
[ENA]
¢þ
>WENV181368749
OFQN01000238
[OFQN] freshwater metagenome; Freshwater Lake
7155
7231
+
Met
CAT
[ENA]
¢þ
>WENV181369284
OFQP01000095
[OFQP] freshwater metagenome; Freshwater Lake
14943
14867
-
Met
CAT
[ENA]
¢þ
>WENV181370138
OFQS01000059
[OFQS] freshwater metagenome; Freshwater Lake
22337
22261
-
Met
CAT
[ENA]
¢þ
>WENV181370624
OFQT01001081
[OFQT] freshwater metagenome; Freshwater Lake
2207
2131
-
Met
CAT
[ENA]
¢þ
>WENV181377925
OFRA01048888
[OFRA] wastewater metagenome; Lake Maggiore Verbania
410
486
+
Met
CAT
[ENA]
¢þ
>WENV181838237
OGVM01024605
[OGVM] freshwater metagenome; freshwater
111
187
+
Met
CAT
[ENA]
¢þ
>WENV181838902
OGVN01031871
[OGVN] freshwater metagenome; freshwater
435
359
-
Met
CAT
[ENA]
¢þ
>WENV181839337
OGVO01000769
[OGVO] freshwater metagenome; freshwater
3766
3842
+
Met
CAT
[ENA]
¢þ
>WENV181842108
OGVS01032354
[OGVS] freshwater metagenome; freshwater
455
379
-
Met
CAT
[ENA]
¢þ
>WENV181844001
OGVV01002911
[OGVV] freshwater metagenome; freshwater
145
221
+
Met
CAT
[ENA]
¢þ
>WENV181848394
OGVZ01006579
[OGVZ] freshwater metagenome; freshwater
108
184
+
Met
CAT
[ENA]
¢þ
>WENV181853901
OGWJ01001663
[OGWJ] freshwater metagenome; freshwater
95
171
+
Met
CAT
[ENA]
¢þ
>WENV181855548
OGWL01032341
[OGWL] freshwater metagenome; freshwater
460
384
-
Met
CAT
[ENA]
¢þ
>WENV001840
AACY020052518
Marine microbial communities from Global Ocean Sampling (GOS)
1079
1155
+
Met
CAT
[ENA]
>C08007626
CP001010
Betaproteobacteria
Polynucleobacter necessarius [CP001010]
1350581
1350508
-
Met
CAT
[Ensembl]
¡û
>WENV170598950
FUWD010056165
[FUWD] metagenome; unknown
810
734
-
Met
CAT
[ENA]
¢þ
>WENV170624571
FUWD013183538
[FUWD] metagenome; unknown
1074
998
-
Met
CAT
[ENA]
¢þ
>WENV170624572
FUWD013183539
[FUWD] metagenome; unknown
154
78
-
Met
CAT
[ENA]
¢þ
>WENV170632854
FUWD013388089
[FUWD] metagenome; unknown
1074
998
-
Met
CAT
[ENA]
¢þ
>WENV170632855
FUWD013388090
[FUWD] metagenome; unknown
154
78
-
Met
CAT
[ENA]
¢þ
>C181187682
CP030086
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-Creno-4B4 [CP030086]
1394509
1394433
-
Met
CAT
-
¡û
>C181218924
LT606947
Betaproteobacteria
Polynucleobacter necessarius [LT606947]
1318317
1318241
-
Met
CAT
-
¡û
>C181218955
LT606949
Betaproteobacteria
Polynucleobacter necessarius [LT606949]
1436306
1436230
-
Met
CAT
-
¡û
>C181219075
LT615227
Betaproteobacteria
Polynucleobacter necessarius [LT615227]
434098
434022
-
Met
CAT
-
¡û
>C181219100
LT615228
Betaproteobacteria
Polynucleobacter necessarius [LT615228]
1276814
1276738
-
Met
CAT
-
¡û
>W09106275
AAUC01000003
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [AAUC]
37645
37721
+
Met
CAT
[ENA]
¡û
>W09107493
ABJA01000001
Betaproteobacteria
Polynucleobacter necessarius STIR1 [ABJA]
242965
243041
+
Met
CAT
[ENA]
¡û
>C141003807
CP004348
Betaproteobacteria
beta proteobacterium CB [CP004348]
1782210
1782134
-
Met
CAT
[Ensembl]
¡û
>W1911490726
OANS01000001
Betaproteobacteria
Polynucleobacter meluiroseus AP-Melu-1000-B4 [OANS]
213949
214025
+
Met
CAT
[ENA]
¡û
>W1810102009
PGTX01000003
Betaproteobacteria
Polynucleobacter brandtiae UB-Domo-W1 [PGTX]
166349
166273
-
Met
CAT
[ENA]
¡û
>W1810699165
QMCG01000001
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-UK1W16 [QMCG]
136944
136868
-
Met
CAT
[ENA]
¡û
>W1810699182
QMCH01000001
Betaproteobacteria
Polynucleobacter paneuropaeus FUKU-NW-11 [QMCH]
6263
6187
-
Met
CAT
[ENA]
¡û
>C161092384
CP015922
Betaproteobacteria
Polynucleobacter wuianus QLW-P1FAT50C-4 [CP015922]
1975165
1975089
-
Met
CAT
[Ensembl]
¡û
>WENV058697
AACY023338929
Marine microbial communities from Global Ocean Sampling (GOS)
1040
964
-
Met
CAT
[ENA]
>W1610791988
LOJI01000001
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
55048
54972
-
Met
CAT
[ENA]
¡û
>W1610792049
LOJJ01000009
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
77765
77841
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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