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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276396 (124 seq.)
>W1710785196
LJHQ01000063
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
5529
5605
+
Arg
CCT
[ENA]
¡û
>W1710858048
LMAR01000091
Alphaproteobacteria
Bosea thiooxidans [LMAR]
44547
44471
-
Arg
CCT
[ENA]
¡û
>W1710869463
LMJT01000005
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
100072
100148
+
Arg
CCT
[ENA]
¡û
>W1710869624
LMJW01000011
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
412750
412826
+
Arg
CCT
[ENA]
¡û
>W1710879516
LMRT01000009
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
463768
463844
+
Arg
CCT
[ENA]
¡û
>W1710893368
LNER01000433
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
407
483
+
Arg
CCT
[ENA]
¡û
>W1711072971
LSIB01000190
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
16713
16637
-
Arg
CCT
[ENA]
¡û
>W1711073127
LSIG01000074
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
12204
12128
-
Arg
CCT
[ENA]
¡û
>W1711073317
LSIK01000326
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
2880
2956
+
Arg
CCT
[ENA]
¡û
>W1711073795
LSIY01000014
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
11073
10997
-
Arg
CCT
[ENA]
¡û
>W1711074361
LSJL01000147
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
2879
2955
+
Arg
CCT
[ENA]
¡û
>W1711074373
LSJL01000284
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
11073
10997
-
Arg
CCT
[ENA]
¡û
>W1711074510
LSJP01000235
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
11073
10997
-
Arg
CCT
[ENA]
¡û
>W1711074603
LSJR01000264
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
11073
10997
-
Arg
CCT
[ENA]
¡û
>W1711074739
LSJU01001132
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
2635
2559
-
Arg
CCT
[ENA]
¡û
>W1711074783
LSJV01000204
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
21897
21821
-
Arg
CCT
[ENA]
¡û
>W1711074865
LSJX01000271
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
8424
8348
-
Arg
CCT
[ENA]
¡û
>W1711075559
LSKN01000069
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
11073
10997
-
Arg
CCT
[ENA]
¡û
>W1711129947
LUUM01000146
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
31870
31794
-
Arg
CCT
[ENA]
¡û
>W1711188799
LWQT01000070
Alphaproteobacteria
Paramagnetospirillum marisnigri [LWQT]
2731
2807
+
Arg
CCT
[ENA]
¡û
>W1711188854
LWQU01000168
Alphaproteobacteria
Magnetospirillum moscoviense [LWQU]
2582
2506
-
Arg
CCT
[ENA]
¡û
>W1711262684
LYXZ01000094
Alphaproteobacteria
Labrys sp. WJW [LYXZ]
294
218
-
Arg
CCT
[ENA]
¡û
>W1711385459
MEEG01000020
Alphaproteobacteria
Methylobacterium sp. SCN 67-24 [MEEG]
777
701
-
Arg
CCT
[ENA]
¡û
>W1711502403
MKSQ01000026
Alphaproteobacteria
Bosea sp. 67-29 [MKSQ]
617516
617592
+
Arg
CCT
[ENA]
¡û
>W1711505851
MKVW01000009
Alphaproteobacteria
Rhizobiales bacterium 62-17 [MKVW]
273942
273866
-
Arg
CCT
[ENA]
¡û
>C171041983
CP015848
Alphaproteobacteria
Magnetospirillum sp. ME-1 [CP015848]
2434687
2434611
-
Arg
CCT
-
¡û
>C171049952
CP016464
Alphaproteobacteria
Bosea sp. RAC05 [CP016464]
168071
168147
+
Arg
CCT
-
¡û
>C171057772
CP017147
Alphaproteobacteria
Bosea vaviloviae Vaf18 [CP017147]
496383
496307
-
Arg
CCT
-
¡û
>W131094263
AONQ01000051
Alphaproteobacteria
Paramagnetospirillum caucaseum SO-1 [AONQ]
28076
28152
+
Arg
CCT
[ENA]
¡û
>W131163821
ARAB01000008
Alphaproteobacteria
Methylosinus sp. LW4 [ARAB]
588333
588409
+
Arg
CCT
[ENA]
¡û
>W131186361
ARWB01000001
Alphaproteobacteria
Methylopila sp. M107 [ARWB]
3931124
3931048
-
Arg
CCT
[ENA]
¡û
>W131218819
ATYA01000006
Alphaproteobacteria
Methylocapsa acidiphila B2 [ATYA]
1399275
1399199
-
Arg
CCT
[ENA]
¡û
>W131229806
AUHB01000004
Alphaproteobacteria
Pleomorphomonas oryzae DSM 16300 [AUHB]
152677
152601
-
Arg
CCT
[ENA]
¡û
>W131230415
AUHO01000010
Alphaproteobacteria
Kaistia adipata DSM 17808 [AUHO]
531914
531990
+
Arg
CCT
[ENA]
¡û
>W141065506
AQPH01000060
Alphaproteobacteria
Magnetospirillum fulvum MGU-K5 [AQPH]
2884
2960
+
Arg
CCT
[ENA]
¡û
>W08008834
ABLP01000001
Alphaproteobacteria
Methylocella silvestris BL2 [ABLP]
22868
22795
-
Arg
CCT
[ENA]
¡û
>WENV181227190
OFDN01003038
[OFDN] hot springs metagenome; Water
4998
5074
+
Arg
CCT
[ENA]
¢þ
>WENV181414676
OGCL01001023
[OGCL] hot springs metagenome; Hot spring water
25139
25063
-
Arg
CCT
[ENA]
¢þ
>WENV181415399
OGCL01009936
[OGCL] hot springs metagenome; Hot spring water
986
1062
+
Arg
CCT
[ENA]
¢þ
>W141216028
AZUO01000001
Alphaproteobacteria
Methylosinus sp. LW3 [AZUO]
2420296
2420372
+
Arg
CCT
[ENA]
¡û
>W141241788
CAHP01000001
Alphaproteobacteria
Magnetospirillum molischianum DSM 120 [CAHP]
217921
217997
+
Arg
CCT
[ENA]
¡û
>WENV183741222
PJUF01060416
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
78
2
-
Arg
CCT
[ENA]
¢þ
>WENV170002431
AGTN01028470
[AGTN] bioreactor metagenome; poplar biomass
1747
1671
-
Arg
CCT
[ENA]
¢þ
>WENV170003036
AGTN01206985
[AGTN] bioreactor metagenome; poplar biomass
201
277
+
Arg
CCT
[ENA]
¢þ
>WENV170009748
APMI01002480
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2113
2037
-
Arg
CCT
[ENA]
¢þ
>WENV170680772
LFEF01020125
[LFEF] freshwater metagenome; waterbloom
5642
5566
-
Arg
CCT
[ENA]
¢þ
>WENV170711345
LNFM01004724
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
11834
11910
+
Arg
CCT
[ENA]
¢þ
>WENV170712895
LNFM01019771
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2244
2168
-
Arg
CCT
[ENA]
¢þ
>WENV171003174
NNBT01002094
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
26771
26695
-
Arg
CCT
[ENA]
¢þ
>WENV171003808
NNBV01001047
[NNBV] plant metagenome; symbiotic tissue sample KVS11
7856
7932
+
Arg
CCT
[ENA]
¢þ
>C191000393
AP017626
Alphaproteobacteria
Pleomorphomonas sp. SM30 [AP017626]
3621706
3621782
+
Arg
CCT
-
¡û
>C191014016
CP017946
Alphaproteobacteria
Bosea sp. Tri-49 [CP017946]
4984897
4984973
+
Arg
CCT
-
¡û
>C191028875
CP024846
Alphaproteobacteria
Beijerinckiaceae bacterium MG08 [CP024846]
3172031
3172107
+
Arg
CCT
-
¡û
>C191152075
CP036515
Alphaproteobacteria
Lichenihabitans psoromatis PAMC 29148 [CP036515]
2518593
2518669
+
Arg
CCT
-
¡û
>C191220340
LR536450
Alphaproteobacteria
Methylocella tundrae [LR536450]
3566908
3566832
-
Arg
CCT
-
¡û
>C191221075
LR590083
Alphaproteobacteria
Beijerinckiaceae bacterium RH AL1 [LR590083]
4058540
4058464
-
Arg
CCT
-
¡û
>W141701391
JMKQ01000006
Alphaproteobacteria
Methylocystis sp. LW5 [JMKQ]
807466
807542
+
Arg
CCT
[ENA]
¡û
>W141805291
JPKG01000019
Alphaproteobacteria
Bosea sp. LC85 [JPKG]
175294
175218
-
Arg
CCT
[ENA]
¡û
>W141815803
JQJJ01000010
Alphaproteobacteria
Bosea sp. UNC402CLCol [JQJJ]
314996
315072
+
Arg
CCT
[ENA]
¡û
>W141817305
JQKO01000021
Alphaproteobacteria
Methylocapsa aurea [JQKO]
38520
38444
-
Arg
CCT
[ENA]
¡û
>W141821212
JQNK01000009
Alphaproteobacteria
Methylosinus sp. PW1 [JQNK]
228696
228772
+
Arg
CCT
[ENA]
¡û
>C09107904
CP001280
Alphaproteobacteria
Methylocella silvestris BL2 [CP001280]
3290225
3290301
+
Arg
CCT
[Ensembl]
¡û
>W1910498994
FXXN01000028
Alphaproteobacteria
Magnetospirillum sp. 15-1 [FXXN]
407045
407121
+
Arg
CCT
[ENA]
¡û
>W1910501730
FYAS01000030
Alphaproteobacteria
Bosea sp. CS1GBMeth4 [FYAS]
278275
278199
-
Arg
CCT
[ENA]
¡û
>W1910635416
LNCQ01000032
Alphaproteobacteria
Bosea sp. FBZP-16 FBZP-16 [LNCQ]
278355
278431
+
Arg
CCT
[ENA]
¡û
>W1910840121
MZXT01000009
Alphaproteobacteria
Bosea sp. Tri-39 [MZXT]
440642
440718
+
Arg
CCT
[ENA]
¡û
>W1910840159
MZXU01000005
Alphaproteobacteria
Bosea sp. Tri-54 [MZXU]
440642
440718
+
Arg
CCT
[ENA]
¡û
>W1910847661
NBDP01000019
Alphaproteobacteria
Bosea sp. Tri-44 [NBDP]
408258
408334
+
Arg
CCT
[ENA]
¡û
>W1910913995
NHSJ01000045
Alphaproteobacteria
Rhodoblastus sphagnicola DSM 16996 [NHSJ]
63998
64074
+
Arg
CCT
[ENA]
¡û
>W1911148330
NPET01000037
Alphaproteobacteria
Rhodoblastus acidophilus DSM 137 [NPET]
9595
9519
-
Arg
CCT
[ENA]
¡û
>W1911189461
NQVN01000005
Alphaproteobacteria
Pleomorphomonas carboxyditropha SVCO-16 [NQVN]
49024
49100
+
Arg
CCT
[ENA]
¡û
>W1911219081
NRRJ01000001
Alphaproteobacteria
Rhodoblastus acidophilus DSM 137 [NRRJ]
295108
295184
+
Arg
CCT
[ENA]
¡û
>W1810068792
PDZR01000008
Alphaproteobacteria
Methylocella silvestris TVC [PDZR]
64175
64251
+
Arg
CCT
[ENA]
¡û
>W1810173883
PJNW01000014
Alphaproteobacteria
Pleomorphomonas diazotrophica R5-392 [PJNW]
237544
237620
+
Arg
CCT
[ENA]
¡û
>W1810252014
PQFZ01000006
Alphaproteobacteria
Bosea psychrotolerans 1131 [PQFZ]
8374
8298
-
Arg
CCT
[ENA]
¡û
>W1810325511
PUEJ01000008
Alphaproteobacteria
Labrys okinawensis RP1T [PUEJ]
88163
88239
+
Arg
CCT
[ENA]
¡û
>W1810330576
PUIV01000028
Alphaproteobacteria
Methylosinus sporium DSM 17706 [PUIV]
35202
35278
+
Arg
CCT
[ENA]
¡û
>W1810463382
PZZM01000001
Alphaproteobacteria
Bosea sp. 124 [PZZM]
2263649
2263573
-
Arg
CCT
[ENA]
¡û
>W1810658581
QJJK01000004
Alphaproteobacteria
Chelatococcus asaccharovorans DSM 6462 [QJJK]
141146
141222
+
Arg
CCT
[ENA]
¡û
>W1810676895
QKMI01000004
Alphaproteobacteria
Bosea sp. CF476 [QKMI]
132339
132263
-
Arg
CCT
[ENA]
¡û
>W1810887340
QUOY01000004
Alphaproteobacteria
Methylovirgula sp. 4M-Z18 [QUOY]
331910
331834
-
Arg
CCT
[ENA]
¡û
>W1511353032
JROW01000443
Alphaproteobacteria
Methylobacterium sp. ZNC0032 [JROW]
178
254
+
Arg
CCT
[ENA]
¡û
>C161070694
CP014301
Alphaproteobacteria
Bosea sp. PAMC 26642 [CP014301]
3644369
3644293
-
Arg
CCT
[Ensembl]
¡û
>C161108366
LN997848
Alphaproteobacteria
Magnetospirillum sp. XM-1 [LN997848]
600528
600604
+
Arg
CCT
-
¡û
>W1610550638
JXTJ01000012
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
120314
120390
+
Arg
CCT
[ENA]
¡û
>W1610617167
LGSZ01000032
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
165469
165393
-
Arg
CCT
[ENA]
¡û
>W1610649002
LJHQ01000063
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
5529
5605
+
Arg
CCT
[ENA]
¡û
>W1610720394
LMAR01000091
Alphaproteobacteria
Bosea thiooxidans [LMAR]
44547
44471
-
Arg
CCT
[ENA]
¡û
>W1610731809
LMJT01000005
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
100072
100148
+
Arg
CCT
[ENA]
¡û
>W1610731970
LMJW01000011
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
412750
412826
+
Arg
CCT
[ENA]
¡û
>W1610741862
LMRT01000009
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
463768
463844
+
Arg
CCT
[ENA]
¡û
>W1610753634
LNER01000433
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
407
483
+
Arg
CCT
[ENA]
¡û
>W1610912231
LSIB01000190
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
16713
16637
-
Arg
CCT
[ENA]
¡û
>W1610912432
LSIG01000074
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
12204
12128
-
Arg
CCT
[ENA]
¡û
>W1610912622
LSIK01000326
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
2880
2956
+
Arg
CCT
[ENA]
¡û
>W1610913100
LSIY01000014
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
11073
10997
-
Arg
CCT
[ENA]
¡û
>W1610913666
LSJL01000147
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
2879
2955
+
Arg
CCT
[ENA]
¡û
>W1610913678
LSJL01000284
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
11073
10997
-
Arg
CCT
[ENA]
¡û
>W1610913815
LSJP01000235
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
11073
10997
-
Arg
CCT
[ENA]
¡û
>W1610913908
LSJR01000264
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
11073
10997
-
Arg
CCT
[ENA]
¡û
>W1610914044
LSJU01001132
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
2635
2559
-
Arg
CCT
[ENA]
¡û
>W1610914088
LSJV01000204
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
21897
21821
-
Arg
CCT
[ENA]
¡û
>W1610914170
LSJX01000271
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
8424
8348
-
Arg
CCT
[ENA]
¡û
>W1610914864
LSKN01000069
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
11073
10997
-
Arg
CCT
[ENA]
¡û
>W1610941020
LUUM01000146
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
31870
31794
-
Arg
CCT
[ENA]
¡û
>W1610990918
LWQT01000070
Alphaproteobacteria
Paramagnetospirillum marisnigri [LWQT]
2731
2807
+
Arg
CCT
[ENA]
¡û
>W1610990973
LWQU01000168
Alphaproteobacteria
Magnetospirillum moscoviense [LWQU]
2582
2506
-
Arg
CCT
[ENA]
¡û
>W1611024551
LYXZ01000094
Alphaproteobacteria
Labrys sp. WJW [LYXZ]
294
218
-
Arg
CCT
[ENA]
¡û
>W1710064177
BCQA01000001
Alphaproteobacteria
Bosea sp. BIWAKO-01 [BCQA]
2595456
2595532
+
Arg
CCT
[ENA]
¡û
>W1710515710
FNBZ01000007
Alphaproteobacteria
Bosea robiniae [FNBZ]
212748
212672
-
Arg
CCT
[ENA]
¡û
>W1710535133
FNSI01000001
Alphaproteobacteria
Beijerinckia sp. 28-YEA-48 [FNSI]
4692805
4692881
+
Arg
CCT
[ENA]
¡û
>W1710538948
FNUY01000004
Alphaproteobacteria
Bosea lathyri [FNUY]
159202
159278
+
Arg
CCT
[ENA]
¡û
>W1710540201
FNWO01000005
Alphaproteobacteria
Magnetospirillum fulvum [FNWO]
81203
81127
-
Arg
CCT
[ENA]
¡û
>W1710544034
FOAN01000006
Alphaproteobacteria
Bosea lupini [FOAN]
396686
396610
-
Arg
CCT
[ENA]
¡û
>W1710556994
FOKP01000010
Alphaproteobacteria
Bosea sp. CRIB-10 DSM 18164 [FOKP]
94691
94767
+
Arg
CCT
[ENA]
¡û
>W1710564921
FOQV01000004
Alphaproteobacteria
Bosea sp. OK403 [FOQV]
52301
52225
-
Arg
CCT
[ENA]
¡û
>W1710567177
FOSN01000006
Alphaproteobacteria
Methylocapsa palsarum [FOSN]
165315
165239
-
Arg
CCT
[ENA]
¡û
>W1710569712
FOUQ01000002
Alphaproteobacteria
Pleomorphomonas diazotrophica [FOUQ]
141287
141211
-
Arg
CCT
[ENA]
¡û
>W1710583192
FQUP01000002
Alphaproteobacteria
Kaistia soli DSM 19436 [FQUP]
153814
153738
-
Arg
CCT
[ENA]
¡û
>W1710596458
FTMO01000025
Alphaproteobacteria
Bosea sp. TND4EK4 [FTMO]
16664
16588
-
Arg
CCT
[ENA]
¡û
>W1710603269
FUYX01000002
Alphaproteobacteria
Bosea thiooxidans [FUYX]
565263
565339
+
Arg
CCT
[ENA]
¡û
>W1710609847
FYDG01000002
Alphaproteobacteria
Rhodoblastus acidophilus [FYDG]
289173
289097
-
Arg
CCT
[ENA]
¡û
>W1710660473
JXTJ01000012
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
120314
120390
+
Arg
CCT
[ENA]
¡û
>W1710742781
LGSZ01000032
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
165469
165393
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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