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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276708 (28 seq.)
>W1711293544
LZYT01000052
Bacillota
Clostridium felsineum DSM 794 [LZYT]
311
387
+
Met
CAT
[ENA]
¡û
>W1711293629
LZYV01000099
Firmicutes
Clostridium roseum (LZYV) roseum [LZYV]
314
390
+
Met
CAT
[ENA]
¡û
>W1711293709
LZYW01000140
Firmicutes
Clostridium aurantibutyricum (LZYW) aurantibutyricum [LZYW]
260
336
+
Met
CAT
[ENA]
¡û
>W1711293769
LZYX01000004
Bacillota
Clostridium acetobutylicum [LZYX]
87050
87126
+
Met
CAT
[ENA]
¡û
>W1711293790
LZYX01000013
Bacillota
Clostridium acetobutylicum [LZYX]
127
203
+
Met
CAT
[ENA]
¡û
>W1711293826
LZYY01000010
Bacillota
Clostridium acetobutylicum [LZYY]
57
133
+
Met
CAT
[ENA]
¡û
>W1711293846
LZYY01000016
Bacillota
Clostridium acetobutylicum [LZYY]
644
568
-
Met
CAT
[ENA]
¡û
>W1711902973
MZGV01000091
Bacillota
Clostridium oryzae [MZGV]
1041
967
-
Met
CAT
[ENA]
¡û
>C004959
AE001437
Bacillota
Clostridium acetobutylicum ATCC 824 [AE001437]
14497
14573
+
Met
CAT
[Ensembl]
¡û
>C004993
AE001437
Bacillota
Clostridium acetobutylicum ATCC 824 [AE001437]
3338114
3338038
-
Met
CAT
[Ensembl]
¡û
>WENV180326904
OBKS01233697
[OBKS] human gut metagenome; human gut
221
145
-
Ile2
CAT
[ENA]
¢þ
>WENV180474788
OBYS01051681
[OBYS] human gut metagenome; faeces
134
58
-
Ile2
CAT
[ENA]
¢þ
>WENV181449907
OGDX01028120
[OGDX] metagenome; Human gut stool
585
659
+
Ile2
CAT
[ENA]
¢þ
>WENV182075208
OHFQ01049759
[OHFQ] human gut metagenome; feces
82
6
-
Ile2
CAT
[ENA]
¢þ
>WENV182838210
OKGO01003248
[OKGO] human gut metagenome; human gut
61
137
+
Ile2
CAT
[ENA]
¢þ
>WENV183282798
OLSC01025897
[OLSC] human gut metagenome; faeces
497
421
-
Ile2
CAT
[ENA]
¢þ
>ENV08001509
ABNF01012941
freshwater metagenome; microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA)
9
85
+
Met
CAT
[ENA]
¡û
>WENV170563607
CZCB01022830
[CZCB] anaerobic digester metagenome; anaerobic digester
3851
3775
-
Met
CAT
[ENA]
¢þ
>W1910888191
NERJ01000008
Bacillota
Clostridium acetobutylicum JB200 [NERJ]
86972
87048
+
Met
CAT
[ENA]
¡û
>SRA1001613
SRR001073.55216
Tilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA) (SRP000161)
9
85
+
Met
CAT
[SRA]
>W1810394209
PYBN01000003
Bacillota
Clostridium sp. NJ4 [PYBN]
609461
609537
+
Met
CAT
[ENA]
¡û
>W1810394214
PYBN01000004
Bacillota
Clostridium sp. NJ4 [PYBN]
773109
773033
-
Met
CAT
[ENA]
¡û
>C11104553
CP002660
Bacillota
Clostridium acetobutylicum DSM 1731 [CP002660]
14497
14573
+
Met
CAT
[Ensembl]
¡û
>C11104587
CP002660
Bacillota
Clostridium acetobutylicum DSM 1731 [CP002660]
3339740
3339664
-
Met
CAT
[Ensembl]
¡û
>C11104626
CP002118
Bacillota
Clostridium acetobutylicum EA 2018 [CP002118]
14497
14573
+
Met
CAT
[Ensembl]
¡û
>C11104662
CP002118
Bacillota
Clostridium acetobutylicum EA 2018 [CP002118]
3337370
3337294
-
Met
CAT
[Ensembl]
¡û
>W1511357557
JRWL01000011
Bacillota
Clostridium acetobutylicum GXAS18-1 [JRWL]
87431
87507
+
Met
CAT
[ENA]
¡û
>W1511707448
LGVB01000016
Bacillota
Clostridium sp. DMHC 10 [LGVB]
366272
366348
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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