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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276755 (76 seq.)
>W1710861470
LMDQ01000014
Betaproteobacteria
Acidovorax sp. Root402 [LMDQ]
871631
871707
+
Arg
TCT
[ENA]
¡û
>W1710865346
LMGP01000015
Betaproteobacteria
Acidovorax sp. Root568 [LMGP]
585797
585873
+
Arg
TCT
[ENA]
¡û
>W1710866669
LMHQ01000029
Betaproteobacteria
Acidovorax sp. Root70 [LMHQ]
383654
383730
+
Arg
TCT
[ENA]
¡û
>W1710867464
LMIH01000018
Betaproteobacteria
Acidovorax sp. Root217 [LMIH]
82751
82827
+
Arg
TCT
[ENA]
¡û
>W1710867563
LMIJ01000021
Betaproteobacteria
Acidovorax sp. Root219 [LMIJ]
6512
6588
+
Arg
TCT
[ENA]
¡û
>W1710868470
LMJC01000009
Betaproteobacteria
Acidovorax sp. Root267 [LMJC]
6736
6660
-
Arg
TCT
[ENA]
¡û
>W1710868705
LMJH01000001
Betaproteobacteria
Acidovorax sp. Root275 [LMJH]
525739
525663
-
Arg
TCT
[ENA]
¡û
>W1710892941
LNEG01000154
Betaproteobacteria
Burkholderiales bacterium Ga0074133 [LNEG]
7577
7653
+
Arg
TCT
[ENA]
¡û
>W1711073170
LSIH01000278
Betaproteobacteria
Acidovorax delafieldii [LSIH]
17321
17397
+
Arg
TCT
[ENA]
¡û
>W1711124995
LUKZ01000003
Betaproteobacteria
Acidovorax sp. GW101-3H11 [LUKZ]
59057
58981
-
Arg
TCT
[ENA]
¡û
>W1711384815
MEDK01000044
Betaproteobacteria
Acidovorax sp. SCN 65-108 [MEDK]
9005
8929
-
Arg
TCT
[ENA]
¡û
>W1711384879
MEDM01000098
Betaproteobacteria
Acidovorax sp. SCN 65-28 [MEDM]
6758
6682
-
Arg
TCT
[ENA]
¡û
>W1711394790
MERR01000024
Betaproteobacteria
Burkholderiales bacterium GWA2_64_37 [MERR]
386497
386573
+
Arg
TCT
[ENA]
¡û
>W1711503008
MKTF01000057
Betaproteobacteria
Burkholderiales bacterium 64-34 [MKTF]
37325
37401
+
Arg
TCT
[ENA]
¡û
>W1711504618
MKUS01000057
Betaproteobacteria
Burkholderiales bacterium 68-12 [MKUS]
28728
28804
+
Arg
TCT
[ENA]
¡û
>W1712096735
NIAZ01000115
Betaproteobacteria
Acidovorax sp. T1m [NIAZ]
4321
4397
+
Arg
TCT
[ENA]
¡û
>C171049686
CP016447
Betaproteobacteria
Acidovorax sp. RAC01 [CP016447]
4518699
4518775
+
Arg
TCT
-
¡û
>C171118053
CP021359
Betaproteobacteria
Acidovorax carolinensis NA2 [CP021359]
2508592
2508668
+
Arg
TCT
-
¡û
>C171118104
CP021361
Betaproteobacteria
Acidovorax carolinensis NA3 [CP021361]
2540650
2540726
+
Arg
TCT
-
¡û
>C171118180
CP021362
Betaproteobacteria
Acidovorax carolinensis P3 [CP021362]
1457067
1456991
-
Arg
TCT
-
¡û
>C171118206
CP021366
Betaproteobacteria
Acidovorax carolinensis P4 [CP021366]
2624050
2624126
+
Arg
TCT
-
¡û
>C171120956
CP021648
Betaproteobacteria
Acidovorax sp. T1 [CP021648]
1521548
1521472
-
Arg
TCT
-
¡û
>W131227131
AUEX01000021
Betaproteobacteria
Acidovorax sp. JHL-9 [AUEX]
67640
67716
+
Arg
TCT
[ENA]
¡û
>WENV180283748
OBID01002326
[OBID] metagenome; sludge
2601
2525
-
Arg
TCT
[ENA]
¢þ
>WENV181311158
OFJB01000087
[OFJB] sludge metagenome; sludge
54879
54955
+
Arg
TCT
[ENA]
¢þ
>WENV181414098
OGCL01000009
[OGCL] hot springs metagenome; Hot spring water
75470
75546
+
Arg
TCT
[ENA]
¢þ
>WENV181414507
OGCL01000525
[OGCL] hot springs metagenome; Hot spring water
38109
38185
+
Arg
TCT
[ENA]
¢þ
>W141238128
BBJX01000004
Betaproteobacteria
Comamonas granuli NBRC 101663 [BBJX]
383797
383721
-
Arg
TCT
[ENA]
¡û
>W141278778
JAFU01000001
Betaproteobacteria
Acidovorax sp. JHL-3 [JAFU]
2248440
2248364
-
Arg
TCT
[ENA]
¡û
>WENV183743536
PJUJ01004580
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
1552
1628
+
Arg
TCT
[ENA]
¢þ
>WENV183744714
PJUL01000088
[PJUL] feces metagenome; Chicken feces enriched on filter paper
14600
14524
-
Arg
TCT
[ENA]
¢þ
>WENV183744787
PJUL01000234
[PJUL] feces metagenome; Chicken feces enriched on filter paper
41395
41471
+
Arg
TCT
[ENA]
¢þ
>ENV08001978
ABOK01155906
mosquito metagenome; viral fraction from Mung bean nuclease digestion of DNA from mixed species mosquitoes collected in Mission Valley in San Diego, CA
22
98
+
Arg
TCT
[ENA]
¡û
>WENV170707134
LNAP01013568
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3763
3839
+
Arg
TCT
[ENA]
¢þ
>WENV170707272
LNAP01016464
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3933
3857
-
Arg
TCT
[ENA]
¢þ
>WENV170707315
LNAP01017252
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2452
2376
-
Arg
TCT
[ENA]
¢þ
>WENV170707526
LNAP01023789
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2758
2682
-
Arg
TCT
[ENA]
¢þ
>WENV170708768
LNAQ01000863
[LNAQ] soil metagenome; soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2441
2517
+
Arg
TCT
[ENA]
¢þ
>WENV170711488
LNFM01005498
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3872
3948
+
Arg
TCT
[ENA]
¢þ
>W09133925
ACQT01000055
Betaproteobacteria
Acidovorax delafieldii 2AN [ACQT]
7629
7553
-
Arg
TCT
[ENA]
¡û
>W1910179202
BJHU01000035
Betaproteobacteria
Acidovorax sp. NB1 [BJHU]
208751
208827
+
Arg
TCT
[ENA]
¡û
>W1910699777
MERV01000033
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_01_FULL_64_960 [MERV]
207062
206986
-
Arg
TCT
[ENA]
¡û
>W1910699794
MERW01000005
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_02_FULL_64_19 [MERW]
128331
128255
-
Arg
TCT
[ENA]
¡û
>W1910699975
MESB01000305
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_65_48 [MESB]
37723
37799
+
Arg
TCT
[ENA]
¡û
>W1910700269
MESJ01000019
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_64_33 [MESJ]
63677
63601
-
Arg
TCT
[ENA]
¡û
>W1910700295
MESJ01000044
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_64_33 [MESJ]
242183
242259
+
Arg
TCT
[ENA]
¡û
>W1911114319
NOIG01000004
Betaproteobacteria
Acidovorax kalamii KNDSW-TSA6 [NOIG]
859801
859725
-
Arg
TCT
[ENA]
¡û
>W1911647686
QAJR01000005
Betaproteobacteria
Acidovorax sp. FJL06 [QAJR]
190559
190635
+
Arg
TCT
[ENA]
¡û
>W1911768545
QXGR01000006
Betaproteobacteria
Simplicispira lacusdiani CPCC 100842 [QXGR]
216617
216693
+
Arg
TCT
[ENA]
¡û
>W1810071480
PEET01000001
Betaproteobacteria
Acidovorax sp. 59 [PEET]
2673198
2673274
+
Arg
TCT
[ENA]
¡û
>W1810089229
PGEP01000001
Betaproteobacteria
Acidovorax sp. 69 [PGEP]
3193702
3193778
+
Arg
TCT
[ENA]
¡û
>W1810173363
PJMZ01000001
Betaproteobacteria
Acidovorax sp. 30 [PJMZ]
2280641
2280565
-
Arg
TCT
[ENA]
¡û
>W1810474424
QAIH01000110
Betaproteobacteria
Acidovorax sp. HMWF029 [QAIH]
47965
47889
-
Arg
TCT
[ENA]
¡û
>W1810474690
QAIM01000428
Betaproteobacteria
Acidovorax sp. HMWF018 [QAIM]
1689
1613
-
Arg
TCT
[ENA]
¡û
>W1810513841
QBTZ01000001
Betaproteobacteria
Acidovorax sp. 107 [QBTZ]
1147796
1147720
-
Arg
TCT
[ENA]
¡û
>W1810677449
QKMS01000002
Betaproteobacteria
Acidovorax sp. OV235 [QKMS]
208765
208689
-
Arg
TCT
[ENA]
¡û
>W1810683066
QKVP01000005
Betaproteobacteria
Acidovorax sp. ST3 [QKVP]
358705
358629
-
Arg
TCT
[ENA]
¡û
>W1810697052
QLTU01000001
Betaproteobacteria
Acidovorax defluvii DSM 12644 [QLTU]
212620
212696
+
Arg
TCT
[ENA]
¡û
>W1810750698
QOZT01000056
Betaproteobacteria
Acidovorax sp. BoFeN1 [QOZT]
14831
14907
+
Arg
TCT
[ENA]
¡û
>W11156547
AFBG01000018
Betaproteobacteria
Acidovorax radicis N35 [AFBG]
527294
527218
-
Arg
TCT
[ENA]
¡û
>W11156590
AFBH01000012
Betaproteobacteria
Acidovorax radicis N35v [AFBH]
527258
527182
-
Arg
TCT
[ENA]
¡û
>W121019075
AGTS01000044
Betaproteobacteria
Acidovorax sp. NO-1 [AGTS]
39940
39864
-
Arg
TCT
[ENA]
¡û
>C131008670
CP003872
Betaproteobacteria
Acidovorax sp. KKS102 [CP003872]
3304482
3304558
+
Arg
TCT
[Ensembl]
¡û
>W1610623709
LHUP01000201
Betaproteobacteria
Acidovorax sp. SD340 [LHUP]
20850
20926
+
Arg
TCT
[ENA]
¡û
>W1610723816
LMDQ01000014
Betaproteobacteria
Acidovorax sp. Root402 [LMDQ]
871631
871707
+
Arg
TCT
[ENA]
¡û
>W1610727692
LMGP01000015
Betaproteobacteria
Acidovorax sp. Root568 [LMGP]
585797
585873
+
Arg
TCT
[ENA]
¡û
>W1610729015
LMHQ01000029
Betaproteobacteria
Acidovorax sp. Root70 [LMHQ]
383654
383730
+
Arg
TCT
[ENA]
¡û
>W1610729810
LMIH01000018
Betaproteobacteria
Acidovorax sp. Root217 [LMIH]
82751
82827
+
Arg
TCT
[ENA]
¡û
>W1610729909
LMIJ01000021
Betaproteobacteria
Acidovorax sp. Root219 [LMIJ]
6512
6588
+
Arg
TCT
[ENA]
¡û
>W1610730816
LMJC01000009
Betaproteobacteria
Acidovorax sp. Root267 [LMJC]
6736
6660
-
Arg
TCT
[ENA]
¡û
>W1610731051
LMJH01000001
Betaproteobacteria
Acidovorax sp. Root275 [LMJH]
525739
525663
-
Arg
TCT
[ENA]
¡û
>W1610753207
LNEG01000154
Betaproteobacteria
Burkholderiales bacterium Ga0074133 [LNEG]
7577
7653
+
Arg
TCT
[ENA]
¡û
>W1610912475
LSIH01000278
Betaproteobacteria
Acidovorax delafieldii [LSIH]
17321
17397
+
Arg
TCT
[ENA]
¡û
>W1610935928
LUKZ01000003
Betaproteobacteria
Acidovorax sp. GW101-3H11 [LUKZ]
59057
58981
-
Arg
TCT
[ENA]
¡û
>W1710532502
FNQJ01000001
Betaproteobacteria
Acidovorax soli [FNQJ]
156992
156916
-
Arg
TCT
[ENA]
¡û
>W1710754799
LHUP01000201
Betaproteobacteria
Acidovorax sp. SD340 [LHUP]
20850
20926
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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