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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277041 (90 seq.)
>W1711078295
LSMS01000293
Gammaproteobacteria
Colwellia sp. Phe_37 [LSMS]
1238
1314
+
Trp
CCA
[ENA]
¡û
>W1711499144
MKQD01000015
Gammaproteobacteria
Thalassotalea sp. PP2-459 [MKQD]
41138
41214
+
Trp
CCA
[ENA]
¡û
>W1711499182
MKQD01000063
Gammaproteobacteria
Thalassotalea sp. PP2-459 [MKQD]
1303
1379
+
Trp
CCA
[ENA]
¡û
>W1711624698
MPHL01000025
Gammaproteobacteria
Colwellia sp. UCD-KL20 [MPHL]
16536
16460
-
Trp
CCA
[ENA]
¡û
>W1711767487
MUZV01000022
Gammaproteobacteria
Cognaticolwellia aestuarii [MUZV]
2810
2886
+
Trp
CCA
[ENA]
¡û
>W1711947429
NBOC01000003
Gammaproteobacteria
Colwellia chukchiensis [NBOC]
133125
133049
-
Trp
CCA
[ENA]
¡û
>W1711947512
NBOD01000007
Gammaproteobacteria
Cognaticolwellia aestuarii [NBOD]
107438
107514
+
Trp
CCA
[ENA]
¡û
>W1711947604
NBOE01000021
Gammaproteobacteria
Colwellia polaris [NBOE]
4105
4181
+
Trp
CCA
[ENA]
¡û
>W1711947676
NBOF01000007
Gammaproteobacteria
Cognaticolwellia mytili [NBOF]
16395
16319
-
Trp
CCA
[ENA]
¡û
>W1711947744
NBOG01000020
Gammaproteobacteria
Cognaticolwellia sediminilitoris [NBOG]
16044
15968
-
Trp
CCA
[ENA]
¡û
>C171034504
CP014943
Gammaproteobacteria
Colwellia sp. PAMC 21821 [CP014943]
1710967
1710891
-
Trp
CCA
-
¡û
>C171034564
CP014944
Gammaproteobacteria
Colwellia sp. PAMC 20917 [CP014944]
2092879
2092803
-
Trp
CCA
-
¡û
>C171108354
CP020465
Gammaproteobacteria
Cognaticolwellia beringensis NB097-1 [CP020465]
2179796
2179872
+
Trp
CCA
-
¡û
>WENV182540214
OJAF01000206
[OJAF] seawater metagenome; Sea water
1340
1416
+
Trp
CCA
[ENA]
¢þ
>WENV182542782
OJAZ01002187
[OJAZ] seawater metagenome; Sea water
3767
3843
+
Trp
CCA
[ENA]
¢þ
>WENV182543736
OJBC01001195
[OJBC] seawater metagenome; Sea water
1593
1517
-
Trp
CCA
[ENA]
¢þ
>WENV182544608
OJBI01000141
[OJBI] seawater metagenome; Sea water
1484
1560
+
Trp
CCA
[ENA]
¢þ
>WENV182544748
OJBJ01000848
[OJBJ] seawater metagenome; Sea water
3654
3730
+
Trp
CCA
[ENA]
¢þ
>WENV182550077
OJBZ01002322
[OJBZ] seawater metagenome; Sea water
3550
3626
+
Trp
CCA
[ENA]
¢þ
>WENV182550132
OJBZ01004712
[OJBZ] seawater metagenome; Sea water
1527
1451
-
Trp
CCA
[ENA]
¢þ
>WENV182551780
OJCI01001705
[OJCI] seawater metagenome; Sea water
85
161
+
Trp
CCA
[ENA]
¢þ
>WENV182552498
OJCK01000805
[OJCK] seawater metagenome; Sea water
1593
1517
-
Trp
CCA
[ENA]
¢þ
>WENV182554686
OJCW01001386
[OJCW] seawater metagenome; Sea water
3550
3626
+
Trp
CCA
[ENA]
¢þ
>WENV182555208
OJCY01011576
[OJCY] seawater metagenome; Sea water
775
699
-
Trp
CCA
[ENA]
¢þ
>WENV182556877
OJDH01000585
[OJDH] seawater metagenome; Sea water
7553
7477
-
Trp
CCA
[ENA]
¢þ
>WENV182557302
OJDI01005499
[OJDI] seawater metagenome; Sea water
1137
1061
-
Trp
CCA
[ENA]
¢þ
>WENV182558005
OJDL01001686
[OJDL] seawater metagenome; Sea water
3627
3703
+
Trp
CCA
[ENA]
¢þ
>WENV182558735
OJDN01001961
[OJDN] seawater metagenome; Sea water
3550
3626
+
Trp
CCA
[ENA]
¢þ
>WENV182559110
OJDO01001352
[OJDO] seawater metagenome; Sea water
3506
3582
+
Trp
CCA
[ENA]
¢þ
>WENV182560013
OJDR01000194
[OJDR] seawater metagenome; Sea water
16041
15965
-
Trp
CCA
[ENA]
¢þ
>WENV182560565
OJDU01006792
[OJDU] seawater metagenome; Sea water
363
439
+
Trp
CCA
[ENA]
¢þ
>WENV182561157
OJDV01009023
[OJDV] seawater metagenome; Sea water
113
189
+
Trp
CCA
[ENA]
¢þ
>WENV182562416
OJDZ01002571
[OJDZ] seawater metagenome; Sea water
1138
1062
-
Trp
CCA
[ENA]
¢þ
>WENV182562481
OJDZ01003923
[OJDZ] seawater metagenome; Sea water
1254
1330
+
Trp
CCA
[ENA]
¢þ
>WENV182565335
OJEH01002598
[OJEH] seawater metagenome; Sea water
3550
3626
+
Trp
CCA
[ENA]
¢þ
>WENV182565899
OJEI01001066
[OJEI] seawater metagenome; Sea water
1333
1257
-
Trp
CCA
[ENA]
¢þ
>WENV182566212
OJEJ01001068
[OJEJ] seawater metagenome; Sea water
3627
3703
+
Trp
CCA
[ENA]
¢þ
>WENV182567469
OJEO01001669
[OJEO] seawater metagenome; Sea water
1961
1885
-
Trp
CCA
[ENA]
¢þ
>WENV182567983
OJEP01007275
[OJEP] seawater metagenome; Sea water
895
819
-
Trp
CCA
[ENA]
¢þ
>WENV182568203
OJER01001631
[OJER] seawater metagenome; Sea water
111
187
+
Trp
CCA
[ENA]
¢þ
>WENV182568685
OJEW01000245
[OJEW] seawater metagenome; Sea water
5270
5346
+
Trp
CCA
[ENA]
¢þ
>WENV182568940
OJEX01005523
[OJEX] seawater metagenome; Sea water
1119
1043
-
Trp
CCA
[ENA]
¢þ
>WENV182569641
OJFA01001650
[OJFA] seawater metagenome; Sea water
670
594
-
Trp
CCA
[ENA]
¢þ
>WENV182572246
OJFL01001655
[OJFL] seawater metagenome; Sea water
6025
6101
+
Trp
CCA
[ENA]
¢þ
>WENV182573511
OJFP01002944
[OJFP] seawater metagenome; Sea water
1593
1517
-
Trp
CCA
[ENA]
¢þ
>WENV182574928
OJFS01008649
[OJFS] seawater metagenome; Sea water
1138
1062
-
Trp
CCA
[ENA]
¢þ
>WENV182575235
OJFU01001663
[OJFU] seawater metagenome; Sea water
1387
1311
-
Trp
CCA
[ENA]
¢þ
>WENV182575641
OJFV01000871
[OJFV] seawater metagenome; Sea water
350
426
+
Trp
CCA
[ENA]
¢þ
>WENV182576103
OJFX01003109
[OJFX] seawater metagenome; Sea water
1387
1311
-
Trp
CCA
[ENA]
¢þ
>WENV182576882
OJFZ01004410
[OJFZ] seawater metagenome; Sea water
553
477
-
Trp
CCA
[ENA]
¢þ
>WENV182577019
OJGC01000506
[OJGC] seawater metagenome; Sea water
5965
5889
-
Trp
CCA
[ENA]
¢þ
>WENV182577696
OJGH01001276
[OJGH] seawater metagenome; Sea water
3350
3426
+
Trp
CCA
[ENA]
¢þ
>WENV182579741
OJGT01000138
[OJGT] seawater metagenome; Sea water
710
786
+
Trp
CCA
[ENA]
¢þ
>WENV182580145
OJGU01005796
[OJGU] seawater metagenome; Sea water
369
293
-
Trp
CCA
[ENA]
¢þ
>WENV182581471
OJGX01008093
[OJGX] seawater metagenome; Sea water
1387
1311
-
Trp
CCA
[ENA]
¢þ
>WENV182585167
OJHH01002620
[OJHH] seawater metagenome; Sea water
3332
3408
+
Trp
CCA
[ENA]
¢þ
>WENV182588032
OJHO01001123
[OJHO] seawater metagenome; Sea water
6768
6692
-
Trp
CCA
[ENA]
¢þ
>WENV182588623
OJHV01003435
[OJHV] seawater metagenome; Sea water
916
840
-
Trp
CCA
[ENA]
¢þ
>WENV182588709
OJHW01006491
[OJHW] seawater metagenome; Sea water
699
623
-
Trp
CCA
[ENA]
¢þ
>WENV182588855
OJHY01000562
[OJHY] seawater metagenome; Sea water
3627
3703
+
Trp
CCA
[ENA]
¢þ
>WENV182591731
OJIO01002982
[OJIO] seawater metagenome; Sea water
1913
1837
-
Trp
CCA
[ENA]
¢þ
>WENV182592697
OJIR01011014
[OJIR] seawater metagenome; Sea water
1137
1061
-
Trp
CCA
[ENA]
¢þ
>WENV182594056
OJIV01000160
[OJIV] seawater metagenome; Sea water
3627
3703
+
Trp
CCA
[ENA]
¢þ
>WENV183055337
OLGX01003252
[OLGX] seawater metagenome; Sea water
1328
1252
-
Trp
CCA
[ENA]
¢þ
>WENV183055393
OLHB01001683
[OLHB] seawater metagenome; Sea water
1113
1037
-
Trp
CCA
[ENA]
¢þ
>WENV183057717
OLHM01001309
[OLHM] seawater metagenome; Sea water
1387
1311
-
Trp
CCA
[ENA]
¢þ
>WENV183058034
OLHN01001052
[OLHN] seawater metagenome; Sea water
3654
3730
+
Trp
CCA
[ENA]
¢þ
>WENV183058301
OLHP01004020
[OLHP] seawater metagenome; Sea water
52
128
+
Trp
CCA
[ENA]
¢þ
>WENV183059716
OLHV01000664
[OLHV] seawater metagenome; Sea water
7898
7974
+
Trp
CCA
[ENA]
¢þ
>WENV183522255
OMOM01001443
[OMOM] seawater metagenome; Sea water
3673
3749
+
Trp
CCA
[ENA]
¢þ
>WENV183622948
OOFW01059733
[OOFW] marine metagenome; sea ice
134
210
+
Trp
CCA
[ENA]
¢þ
>WENV170218395
CEPZ01004963
[CEPZ] marine metagenome genome assembly TARA_039_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1586
1510
-
Trp
CCA
[ENA]
¢þ
>WENV170781288
MAAB01031072
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
733
809
+
Trp
CCA
[ENA]
¢þ
>WENV170783977
MAAC01020227
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
6038
5962
-
Trp
CCA
[ENA]
¢þ
>C181169912
CP028924
Gammaproteobacteria
Colwellia sp. Arc7-D [CP028924]
236060
236136
+
Trp
CCA
-
¡û
>C191128319
CP034660
Gammaproteobacteria
Colwellia sp. Arc7-635 [CP034660]
304374
304450
+
Trp
CCA
-
¡û
>W1810887006
QUOT01000001
Gammaproteobacteria
Thalassotalea euphylliae H3 [QUOT]
3334119
3334043
-
Trp
CCA
[ENA]
¡û
>W1810887021
QUOT01000001
Gammaproteobacteria
Thalassotalea euphylliae H3 [QUOT]
2225277
2225201
-
Trp
CCA
[ENA]
¡û
>W1810887060
QUOU01000001
Gammaproteobacteria
Thalassotalea euphylliae H1 [QUOU]
342461
342537
+
Trp
CCA
[ENA]
¡û
>W1810887086
QUOU01000001
Gammaproteobacteria
Thalassotalea euphylliae H1 [QUOU]
3926303
3926379
+
Trp
CCA
[ENA]
¡û
>W1810887153
QUOV01000001
Gammaproteobacteria
Thalassotalea euphylliae H2 [QUOV]
305167
305243
+
Trp
CCA
[ENA]
¡û
>W1810887183
QUOV01000001
Gammaproteobacteria
Thalassotalea euphylliae H2 [QUOV]
3571528
3571604
+
Trp
CCA
[ENA]
¡û
>W1511533758
JYNI01000052
Gammaproteobacteria
Thalassomonas actiniarum A5K-106 [JYNI]
118234
118158
-
Trp
CCA
[ENA]
¡û
>W1511533794
JYNI01000096
Gammaproteobacteria
Thalassomonas actiniarum A5K-106 [JYNI]
2096
2172
+
Trp
CCA
[ENA]
¡û
>W1511533810
JYNJ01000025
Gammaproteobacteria
Thalassomonas viridans XOM25 [JYNJ]
53017
52941
-
Trp
CCA
[ENA]
¡û
>W1511533843
JYNJ01000163
Gammaproteobacteria
Thalassomonas viridans XOM25 [JYNJ]
1006
1082
+
Trp
CCA
[ENA]
¡û
>W1610917311
LSMS01000293
Gammaproteobacteria
Colwellia sp. Phe_37 [LSMS]
1238
1314
+
Trp
CCA
[ENA]
¡û
>W1710545274
FOBI01000033
Gammaproteobacteria
Colwellia chukchiensis [FOBI]
16003
15927
-
Trp
CCA
[ENA]
¡û
>W1710553201
FOHK01000003
Gammaproteobacteria
Thalassotalea agarivorans [FOHK]
63736
63812
+
Trp
CCA
[ENA]
¡û
>W1710553234
FOHK01000014
Gammaproteobacteria
Thalassotalea agarivorans [FOHK]
81876
81952
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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