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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.27709 (29 seq.)
>W1711127272
LUQA01000035
Alphaproteobacteria
Rhodobacteraceae bacterium REDSEA-S11_B6 [LUQA]
10147
10058
-
Ser
GCT
[ENA]
¡û
>W1711385171
MEDU01000123
Alphaproteobacteria
Devosia sp. SCN 66-27 [MEDU]
38997
39086
+
Ser
GCT
[ENA]
¡û
>W131224282
AUCR01000001
Alphaproteobacteria
Cucumibacter marinus DSM 18995 [AUCR]
606621
606710
+
Ser
GCT
[ENA]
¡û
>W1711504980
MKVB01000006
Alphaproteobacteria
Devosia sp. 66-14 [MKVB]
207574
207485
-
Ser
GCT
[ENA]
¡û
>W1711510447
MLAX01000006
Alphaproteobacteria
Alphaproteobacteria bacterium AO1-B [MLAX]
165396
165485
+
Ser
GCT
[ENA]
¡û
>C171088718
CP019044
Alphaproteobacteria
Salaquimonas pukyongi RR3-28 [CP019044]
894635
894724
+
Ser
GCT
-
¡û
>W131230686
AUHV01000002
Alphaproteobacteria
Maritalea myrionectae DSM 19524 [AUHV]
81508
81419
-
Ser
GCT
[ENA]
¡û
>ENV08000104
ABLW01009072
viral fraction from Gulf of Mexico
117
28
-
Ser
GCT
[ENA]
¡û
>WENV170136273
CENV01018934
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
25355
25266
-
Ser
GCT
[ENA]
¢þ
>WENV170705061
LLEP01000005
[LLEP] bioreactor metagenome; day64 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
213248
213159
-
Ser
GCT
[ENA]
¢þ
>WENV170750676
LUMH01000251
[LUMH] marine metagenome; Red Sea water column Station 34 - depth 25m
10147
10058
-
Ser
GCT
[ENA]
¢þ
>C181067699
CP022529
Alphaproteobacteria
Labrenzia sp. VG12 [CP022529]
282165
282254
+
Ser
GCT
-
¡û
>C191018819
CP021330
Alphaproteobacteria
Maritalea myrionectae HL2708#5 [CP021330]
2388235
2388146
-
Ser
GCT
-
¡û
>C191188404
CP041191
Alphaproteobacteria
Labrenzia sp. PHM005 [CP041191]
4853544
4853633
+
Ser
GCT
-
¡û
>W1911696598
QMEL01000003
Alphaproteobacteria
Pelagibacterium sediminicola IMCC34151 [QMEL]
298503
298414
-
Ser
GCT
[ENA]
¡û
>W1911698521
QNRC01000057
Alphaproteobacteria
Paracoccus siganidrum M26 [QNRC]
6745
6834
+
Ser
GCT
[ENA]
¡û
>W1911701572
QNUM01000005
Alphaproteobacteria
Cohaesibacter haloalkalitolerans JC131 [QNUM]
360747
360836
+
Ser
GCT
[ENA]
¡û
>W1810116070
PHNO01000604
Alphaproteobacteria
Amaricoccus sp. HAR-UPW-R2A-40 [PHNO]
230
141
-
Ser
GCT
[ENA]
¡û
>W1810196359
PKUQ01000022
Alphaproteobacteria
Cohaesibacter celericrescens H1304 [PKUQ]
49293
49204
-
Ser
GCT
[ENA]
¡û
>W1810725553
QODK01000003
Alphaproteobacteria
Cohaesibacter intestini YE-B6 [QODK]
871260
871349
+
Ser
GCT
[ENA]
¡û
>W1810779220
QQNH01000004
Alphaproteobacteria
Pelagibacterium lacus XYN52 [QQNH]
186974
187063
+
Ser
GCT
[ENA]
¡û
>W11135889
AEFL01000083
Alphaproteobacteria
Roseibium sp. TrichSKD4 [AEFL]
85031
85120
+
Ser
GCT
[ENA]
¡û
>C121005230
CP003075
Alphaproteobacteria
Pelagibacterium halotolerans B2 [CP003075]
1028171
1028260
+
Ser
GCT
[Ensembl]
¡û
>W1610092209
CXWD01000004
Alphaproteobacteria
Roseibium alexandrii [CXWD]
278614
278525
-
Ser
GCT
[ENA]
¡û
>W1610938386
LUQA01000035
Alphaproteobacteria
Rhodobacteraceae bacterium REDSEA-S11_B6 [LUQA]
10147
10058
-
Ser
GCT
[ENA]
¡û
>W1710095566
CXWD01000004
Alphaproteobacteria
Roseibium alexandrii [CXWD]
278614
278525
-
Ser
GCT
[ENA]
¡û
>W1710516660
FNCS01000005
Alphaproteobacteria
Pelagibacterium luteolum [FNCS]
475
386
-
Ser
GCT
[ENA]
¡û
>W1710533648
FNRH01000001
Alphaproteobacteria
Pelagibacterium halotolerans H642 [FNRH]
977301
977390
+
Ser
GCT
[ENA]
¡û
>W1710571127
FOVR01000001
Alphaproteobacteria
Cohaesibacter marisflavi [FOVR]
768740
768829
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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