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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277204 (37 seq.)
>W131163740
AQZZ01000003
Bacillota
Succinispira mobilis DSM 6222 [AQZZ]
208815
208740
-
Phe
GAA
[ENA]
¡û
>W131222969
AUBR01000049
Bacillota
Desulfovirgula thermocuniculi DSM 16036 [AUBR]
9506
9581
+
Phe
GAA
[ENA]
¡û
>W131219092
ATYG01000019
Bacillota
Carboxydothermus ferrireducens DSM 11255 [ATYG]
46806
46881
+
Phe
GAA
[ENA]
¡û
>C005905
CP000141
Bacillota
Carboxydothermus hydrogenoformans Z-2901 [CP000141]
1456037
1455962
-
Phe
GAA
[Ensembl]
¡û
>WENV181404145
OGBZ01001628
[OGBZ] sediment metagenome; hot spring sediment
1154
1229
+
Phe
GAA
[ENA]
¢þ
>WENV170658798
JUEG02000581
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
50022
49947
-
Phe
GAA
[ENA]
¢þ
>WENV170677652
LDZT01007724
[LDZT] terrestrial metagenome; oil reservoir sample SB1
1522
1597
+
Phe
GAA
[ENA]
¢þ
>WENV170772573
LXNJ01000072
[LXNJ] sponge metagenome; marine sponge reef
4810
4735
-
Phe
GAA
[ENA]
¢þ
>WENV170957787
MKWU01000184
[MKWU] sponge metagenome;
105431
105506
+
Phe
GAA
[ENA]
¢þ
>C181166309
CP028491
Bacillota
Carboxydocella thermautotrophica 019 [CP028491]
1472674
1472749
+
Phe
GAA
-
¡û
>C181166347
CP028491
Bacillota
Carboxydocella thermautotrophica 019 [CP028491]
2624658
2624583
-
Phe
GAA
-
¡û
>C181166383
CP028514
Bacillota
Carboxydocella thermautotrophica 41 [CP028514]
1495566
1495641
+
Phe
GAA
-
¡û
>C181166421
CP028514
Bacillota
Carboxydocella thermautotrophica 41 [CP028514]
2637657
2637582
-
Phe
GAA
-
¡û
>W141621732
JJNX02000043
Bacillota
Peptococcaceae bacterium SCADC1_2_3 [JJNX]
15408
15333
-
Phe
GAA
[ENA]
¡û
>W141801421
JPEC01000030
Bacillota
Peptococcaceae bacterium SCADC1_2_3 [JPEC]
5430
5505
+
Phe
GAA
[ENA]
¡û
>W141801464
JPED01000033
Bacillota
Peptococcaceae bacterium SCADC1_2_3 [JPED]
15331
15256
-
Phe
GAA
[ENA]
¡û
>W1810830071
QSLN01000002
Bacillota
Ammonifex thiophilus SR [QSLN]
149440
149365
-
Phe
GAA
[ENA]
¡û
>C10100341
CP001785
Bacillota
Ammonifex degensii KC4 [CP001785]
189842
189917
+
Phe
GAA
[Ensembl]
¡û
>C10113251
CP002028
Bacillota
Thermincola potens JR [CP002028]
1103632
1103707
+
Phe
GAA
[Ensembl]
¡û
>W1511564275
LADP01000018
Bacillota
Peptococcaceae bacterium BRH_c8a [LADP]
292763
292838
+
Phe
GAA
[ENA]
¡û
>W1511706094
LGTE01000001
Bacillota
Thermincola ferriacetica Z-0001 [LGTE]
20690
20765
+
Phe
GAA
[ENA]
¡û
>W1610073860
BCWE01000004
Bacillota
Desulfolucanica intricata intricatum [BCWE]
85386
85461
+
Phe
GAA
[ENA]
¡û
>W1610073924
BCWE01000066
Bacillota
Desulfolucanica intricata intricatum [BCWE]
340
265
-
Phe
GAA
[ENA]
¡û
>W1610614101
LGGS01000160
Bacillota
Pelotomaculum thermopropionicum [LGGS]
1522
1597
+
Phe
GAA
[ENA]
¡û
>W1710070978
BCWE01000004
Bacillota
Desulfolucanica intricata intricatum [BCWE]
85386
85461
+
Phe
GAA
[ENA]
¡û
>W1710071042
BCWE01000066
Bacillota
Desulfolucanica intricata intricatum [BCWE]
340
265
-
Phe
GAA
[ENA]
¡û
>W1710083571
BDJK01000055
Bacillota
Carboxydothermus pertinax [BDJK]
167545
167620
+
Phe
GAA
[ENA]
¡û
>W1710083596
BDJL01000019
Bacillota
Carboxydothermus islandicus [BDJL]
66286
66361
+
Phe
GAA
[ENA]
¡û
>W1710084308
BDLQ01000004
Bacillota
Carboxydocella sp. ULO1 [BDLQ]
1519
1444
-
Phe
GAA
[ENA]
¡û
>W1710084331
BDLQ01000021
Bacillota
Carboxydocella sp. ULO1 [BDLQ]
17343
17418
+
Phe
GAA
[ENA]
¡û
>W1710084422
BDLR01000085
Bacillota
Carboxydocella sp. JDF658 [BDLR]
1543
1468
-
Phe
GAA
[ENA]
¡û
>W1710084433
BDLR01000181
Bacillota
Carboxydocella sp. JDF658 [BDLR]
17235
17310
+
Phe
GAA
[ENA]
¡û
>W1710562396
FOOX01000033
Bacillota
Desulfotruncus arcticus arcticum [FOOX]
9569
9494
-
Phe
GAA
[ENA]
¡û
>W1710574775
FOYM01000001
Bacillota
Desulfoscipio geothermicus geothermicum [FOYM]
274382
274307
-
Phe
GAA
[ENA]
¡û
>W1710601670
FUXM01000045
Bacillota
Carboxydocella sporoproducens DSM 16521 [FUXM]
92
167
+
Phe
GAA
[ENA]
¡û
>W1710601699
FUXM01000080
Bacillota
Carboxydocella sporoproducens DSM 16521 [FUXM]
1330
1255
-
Phe
GAA
[ENA]
¡û
>W1710735184
LGGS01000160
Bacillota
Pelotomaculum thermopropionicum [LGGS]
1522
1597
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK