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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277278 (74 seq.)
>W1710929505
LOGJ01000009
Gammaproteobacteria
Escherichia coli [LOGJ]
101648
101572
-
Met
CAT
[ENA]
¡û
>W1711012097
LQSQ01000007
Gammaproteobacteria
Escherichia coli [LQSQ]
11199
11123
-
Met
CAT
[ENA]
¡û
>W1711162720
LVSM01000111
Gammaproteobacteria
Escherichia coli [LVSM]
17685
17761
+
Met
CAT
[ENA]
¡û
>W1711591098
MOFG01000005
Gammaproteobacteria
Escherichia coli [MOFG]
225976
225900
-
Met
CAT
[ENA]
¡û
>W1711592967
MOGF01000010
Gammaproteobacteria
Escherichia coli [MOGF]
83514
83590
+
Met
CAT
[ENA]
¡û
>W1711593443
MOGL01000020
Gammaproteobacteria
Escherichia coli [MOGL]
214625
214549
-
Met
CAT
[ENA]
¡û
>W1711594034
MOGT01000026
Gammaproteobacteria
Escherichia coli [MOGT]
10547
10471
-
Met
CAT
[ENA]
¡û
>W1711594136
MOGU01000039
Gammaproteobacteria
Escherichia coli [MOGU]
214989
214913
-
Met
CAT
[ENA]
¡û
>W1711594426
MOGY01000024
Gammaproteobacteria
Escherichia coli [MOGY]
83406
83482
+
Met
CAT
[ENA]
¡û
>W1711594744
MOHD01000004
Gammaproteobacteria
Escherichia coli [MOHD]
30992
30916
-
Met
CAT
[ENA]
¡û
>W1711765072
MUWZ01000022
Gammaproteobacteria
Escherichia coli [MUWZ]
60340
60416
+
Met
CAT
[ENA]
¡û
>W1711929103
NAFN01000021
Gammaproteobacteria
Escherichia coli [NAFN]
198338
198414
+
Met
CAT
[ENA]
¡û
>W1711929191
NAFO01000024
Gammaproteobacteria
Escherichia coli [NAFO]
44218
44294
+
Met
CAT
[ENA]
¡û
>C171004202
CP010150
Gammaproteobacteria
Escherichia coli D7 [CP010150]
3383449
3383373
-
Met
CAT
-
¡û
>C171006538
CP010229
Gammaproteobacteria
Escherichia coli S10 [CP010229]
2611084
2611008
-
Met
CAT
-
¡û
>WENV180116509
OAQV01000207
[OAQV] human gut metagenome; ENVO:feces
10522
10446
-
fMet
CAT
[ENA]
¢þ
>W141013479
AIAG01000033
Gammaproteobacteria
Escherichia coli C155_11 [AIAG]
104084
104160
+
Met
CAT
[ENA]
¡û
>WENV180238457
OBDA01000756
[OBDA] human gut metagenome; human gut
98
174
+
fMet
CAT
[ENA]
¢þ
>WENV181493239
OGGA01000011
[OGGA] metagenome; Human gut stool
130506
130582
+
fMet
CAT
[ENA]
¢þ
>W141167565
AXUG01000144
Gammaproteobacteria
Escherichia coli 113303 [AXUG]
9977
9901
-
Met
CAT
[ENA]
¡û
>WENV183776879
PPYF01099928
[PPYF] human gut metagenome; stool from patient with Crohn's disease
11155
11079
-
fMet
CAT
[ENA]
¢þ
>C181151632
CP027388
Gammaproteobacteria
Escherichia coli 2011C-4251 [CP027388]
4884344
4884268
-
Met
CAT
-
¡û
>C191159778
CP038453
Gammaproteobacteria
Escherichia coli EC-129 [CP038453]
1004176
1004100
-
Met
CAT
-
¡û
>W141533287
JHFI01000007
Gammaproteobacteria
Escherichia coli O45:H2 str. 2010C-3876 [JHFI]
197255
197331
+
Met
CAT
[ENA]
¡û
>C191192950
LR130552
Gammaproteobacteria
Escherichia coli MS14386 [LR130552]
1027312
1027236
-
Met
CAT
-
¡û
>W141616850
JJLH01000045
Gammaproteobacteria
Escherichia coli 1-182-04_S4_C3 [JJLH]
156549
156625
+
Met
CAT
[ENA]
¡û
>W141616900
JJLH01000103
Gammaproteobacteria
Escherichia coli 1-182-04_S4_C3 [JJLH]
877
953
+
Met
CAT
[ENA]
¡û
>W141617455
JJLM01000069
Gammaproteobacteria
Escherichia coli 1-182-04_S4_C2 [JJLM]
197435
197511
+
Met
CAT
[ENA]
¡û
>W141617793
JJLP01000038
Gammaproteobacteria
Escherichia coli 1-182-04_S4_C1 [JJLP]
1955
2031
+
Met
CAT
[ENA]
¡û
>W141617794
JJLP01000040
Gammaproteobacteria
Escherichia coli 1-182-04_S4_C1 [JJLP]
2
78
+
Met
CAT
[ENA]
¡û
>W141617841
JJLP01000077
Gammaproteobacteria
Escherichia coli 1-182-04_S4_C1 [JJLP]
1735
1811
+
Met
CAT
[ENA]
¡û
>W1910092271
BFSQ01000007
Gammaproteobacteria
Escherichia coli JML199 [BFSQ]
60828
60904
+
Met
CAT
[ENA]
¡û
>W1910116721
BGFA01000056
Gammaproteobacteria
Escherichia coli OU-NP009 [BGFA]
40954
41030
+
Met
CAT
[ENA]
¡û
>W1910669254
MCLA01000059
Gammaproteobacteria
Escherichia coli HE-MDREc50 [MCLA]
31655
31579
-
Met
CAT
[ENA]
¡û
>W1910669496
MCLD01000067
Gammaproteobacteria
Escherichia coli HE-MDREc53 [MCLD]
26723
26647
-
Met
CAT
[ENA]
¡û
>W1911028970
NLTN01000027
Gammaproteobacteria
Escherichia coli MOD1-EC5070 [NLTN]
11486
11410
-
Met
CAT
[ENA]
¡û
>W1911044154
NMBH01000040
Gammaproteobacteria
Escherichia coli MOD1-EC6184 [NMBH]
151
75
-
Met
CAT
[ENA]
¡û
>W1911044399
NMBK01000026
Gammaproteobacteria
Escherichia coli MOD1-EC6177 [NMBK]
61339
61415
+
Met
CAT
[ENA]
¡û
>W1911051921
NMFM01000016
Gammaproteobacteria
Escherichia coli MOD1-EC5998 [NMFM]
82677
82753
+
Met
CAT
[ENA]
¡û
>W1911062095
NMKT01000010
Gammaproteobacteria
Escherichia coli MOD1-EC6818 [NMKT]
196226
196302
+
Met
CAT
[ENA]
¡û
>W1911096294
NNYJ01000003
Gammaproteobacteria
Escherichia coli MOD1-EC6178 [NNYJ]
10
86
+
Met
CAT
[ENA]
¡û
>W1911096565
NNYM01000038
Gammaproteobacteria
Escherichia coli MOD1-EC6174 [NNYM]
27276
27200
-
Met
CAT
[ENA]
¡û
>W1911110878
NOGH01000035
Gammaproteobacteria
Escherichia coli MOD1-EC5147 [NOGH]
26957
26881
-
Met
CAT
[ENA]
¡û
>W1911111656
NOGT01000019
Gammaproteobacteria
Escherichia coli MOD1-EC5135 [NOGT]
26957
26881
-
Met
CAT
[ENA]
¡û
>W1911156192
NPKK01000010
Gammaproteobacteria
Escherichia coli MC185 [NPKK]
198914
198990
+
Met
CAT
[ENA]
¡û
>W1911164496
NQAH01000009
Gammaproteobacteria
Escherichia coli ECCTRPRTH02 [NQAH]
10
86
+
Met
CAT
[ENA]
¡û
>W1911164568
NQAI01000033
Gammaproteobacteria
Escherichia coli ECCTRPRTH03 [NQAI]
131956
132032
+
Met
CAT
[ENA]
¡û
>W1911233906
NSAD01000091
Gammaproteobacteria
Escherichia coli A310 [NSAD]
27418
27342
-
Met
CAT
[ENA]
¡û
>W1911233991
NSAE01000079
Gammaproteobacteria
Escherichia coli A76 [NSAE]
60639
60715
+
Met
CAT
[ENA]
¡û
>W1911689087
QLJV01000017
Gammaproteobacteria
Escherichia coli LMR3349 [QLJV]
30376
30300
-
Met
CAT
[ENA]
¡û
>W1810050402
PCZZ01000065
Gammaproteobacteria
Escherichia coli CSU FSL E1-134 [PCZZ]
22695
22771
+
Met
CAT
[ENA]
¡û
>W1810095517
PGJJ01000002
Gammaproteobacteria
Escherichia coli Ehw1-5f [PGJJ]
269090
269014
-
Met
CAT
[ENA]
¡û
>W1810165827
PJHL01000015
Gammaproteobacteria
Escherichia coli 3432 [PJHL]
878
802
-
Met
CAT
[ENA]
¡û
>W1810240514
PPTL01000013
Gammaproteobacteria
Escherichia coli ECAJ6 [PPTL]
54
130
+
Met
CAT
[ENA]
¡û
>W1810240556
PPTM01000011
Gammaproteobacteria
Escherichia coli ECAJ7 [PPTM]
11211
11135
-
Met
CAT
[ENA]
¡û
>W1810301763
PTOC01000007
Gammaproteobacteria
Escherichia coli SC_F11_1 [PTOC]
198460
198536
+
Met
CAT
[ENA]
¡û
>W1810304774
PTQA01000011
Gammaproteobacteria
Escherichia coli SWECR0161 [PTQA]
421
345
-
Met
CAT
[ENA]
¡û
>W1810304830
PTQB01000002
Gammaproteobacteria
Escherichia coli SWECR0148 [PTQB]
269089
269013
-
Met
CAT
[ENA]
¡û
>W1810304915
PTQC01000003
Gammaproteobacteria
Escherichia coli CowEC285 [PTQC]
269090
269014
-
Met
CAT
[ENA]
¡û
>W1810358102
PVOE01000067
Gammaproteobacteria
Escherichia coli KG-13 [PVOE]
25637
25561
-
Met
CAT
[ENA]
¡û
>W1810358223
PVOG01000052
Gammaproteobacteria
Escherichia coli KG-15 [PVOG]
172605
172681
+
Met
CAT
[ENA]
¡û
>W1810358673
PVOL01000076
Gammaproteobacteria
Escherichia coli KG-7 [PVOL]
88636
88560
-
Met
CAT
[ENA]
¡û
>W1810358743
PVOM01000061
Gammaproteobacteria
Escherichia coli KG-9 [PVOM]
428533
428457
-
Met
CAT
[ENA]
¡û
>W1810471114
QAFX01000077
Gammaproteobacteria
Escherichia coli KG-23 [QAFX]
17934
17858
-
Met
CAT
[ENA]
¡û
>W1511373254
JSLG01000054
Gammaproteobacteria
Escherichia coli upec-205 [JSLG]
11486
11410
-
Met
CAT
[ENA]
¡û
>W1510277942
CJSD01000003
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhi 1010996 [CJSD]
17033
16957
-
Met
CAT
[ENA]
¡û
>W1511497823
JWZE01000004
Gammaproteobacteria
Escherichia coli CVM N35912PS [JWZE]
10547
10471
-
Met
CAT
[ENA]
¡û
>W1511498657
JWZO01000027
Gammaproteobacteria
Escherichia coli CVM N33624PS [JWZO]
130
206
+
Met
CAT
[ENA]
¡û
>W1511587558
LBBM01000028
Gammaproteobacteria
Escherichia coli DE048 [LBBM]
29972
29896
-
Met
CAT
[ENA]
¡û
>W1511630984
LDDD01000088
Gammaproteobacteria
Escherichia coli CFSAN026815 [LDDD]
86765
86689
-
Met
CAT
[ENA]
¡û
>W1511686206
LFQP01000009
Gammaproteobacteria
Escherichia coli DE147 [LFQP]
119180
119256
+
Met
CAT
[ENA]
¡û
>W1610787047
LOGJ01000009
Gammaproteobacteria
Escherichia coli [LOGJ]
101648
101572
-
Met
CAT
[ENA]
¡û
>W1610860573
LQSQ01000007
Gammaproteobacteria
Escherichia coli [LQSQ]
11199
11123
-
Met
CAT
[ENA]
¡û
>W1610973260
LVSM01000111
Gammaproteobacteria
Escherichia coli [LVSM]
17685
17761
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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