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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277468 (71 seq.)
>W1711229988
LXZG01000094
Bacillota
Ligilactobacillus salivarius [LXZG]
734
809
+
Arg
ACG
[ENA]
¡û
>W1711943534
NBDZ01000005
Bacillota
Ligilactobacillus salivarius [NBDZ]
1340
1415
+
Arg
ACG
[ENA]
¡û
>W1711943577
NBEA01000005
Bacillota
Ligilactobacillus salivarius [NBEA]
731
806
+
Arg
ACG
[ENA]
¡û
>W1711943615
NBEB01000014
Bacillota
Ligilactobacillus salivarius [NBEB]
35
110
+
Arg
ACG
[ENA]
¡û
>W1711943665
NBEC01000016
Bacillota
Ligilactobacillus salivarius [NBEC]
540
615
+
Arg
ACG
[ENA]
¡û
>W1711943753
NBEE01000007
Bacillota
Ligilactobacillus salivarius [NBEE]
664
739
+
Arg
ACG
[ENA]
¡û
>W1711943787
NBEF01000008
Bacillota
Ligilactobacillus salivarius [NBEF]
595
670
+
Arg
ACG
[ENA]
¡û
>W1711943835
NBEG01000006
Bacillota
Ligilactobacillus salivarius [NBEG]
540
615
+
Arg
ACG
[ENA]
¡û
>W1711943927
NBEI01000005
Bacillota
Ligilactobacillus salivarius [NBEI]
575
650
+
Arg
ACG
[ENA]
¡û
>W1711943977
NBEJ01000004
Bacillota
Ligilactobacillus salivarius [NBEJ]
638
713
+
Arg
ACG
[ENA]
¡û
>W1711944164
NBEN01000003
Bacillota
Ligilactobacillus salivarius [NBEN]
828
903
+
Arg
ACG
[ENA]
¡û
>W1711944294
NBEP01000084
Bacillota
Ligilactobacillus salivarius [NBEP]
18869
18794
-
Arg
ACG
[ENA]
¡û
>W1711944313
NBEQ01000006
Bacillota
Ligilactobacillus salivarius [NBEQ]
112
187
+
Arg
ACG
[ENA]
¡û
>W1711944355
NBER01000010
Bacillota
Ligilactobacillus salivarius [NBER]
112
187
+
Arg
ACG
[ENA]
¡û
>W1711944406
NBES01000008
Bacillota
Ligilactobacillus salivarius [NBES]
644
719
+
Arg
ACG
[ENA]
¡û
>W1711944499
NBEU01000007
Bacillota
Ligilactobacillus salivarius [NBEU]
621
696
+
Arg
ACG
[ENA]
¡û
>W1711944543
NBEV01000014
Bacillota
Ligilactobacillus salivarius [NBEV]
920
845
-
Arg
ACG
[ENA]
¡û
>W1711944592
NBEW01000012
Bacillota
Ligilactobacillus salivarius [NBEW]
747
822
+
Arg
ACG
[ENA]
¡û
>W1711944626
NBEX01000015
Bacillota
Ligilactobacillus salivarius [NBEX]
640
715
+
Arg
ACG
[ENA]
¡û
>W1711944704
NBEY01000131
Bacillota
Ligilactobacillus salivarius [NBEY]
122
197
+
Arg
ACG
[ENA]
¡û
>W1712035983
NFHF01000010
Bacillota
Ligilactobacillus salivarius [NFHF]
599
674
+
Arg
ACG
[ENA]
¡û
>W1712036927
NFHV01000023
Bacillota
Ligilactobacillus salivarius [NFHV]
599
674
+
Arg
ACG
[ENA]
¡û
>W1712041948
NFLK01000008
Bacillota
Ligilactobacillus salivarius [NFLK]
3881
3956
+
Arg
ACG
[ENA]
¡û
>C171057155
CP017107
Bacillota
Ligilactobacillus salivarius CICC 23174 [CP017107]
278779
278704
-
Arg
ACG
-
¡û
>C171113777
CP020858
Bacillota
Ligilactobacillus salivarius ZLS006 [CP020858]
1608567
1608492
-
Arg
ACG
-
¡û
>C171128981
LT604074
Bacillota
Ligilactobacillus salivarius [LT604074]
1101878
1101953
+
Arg
ACG
-
¡û
>C012671
CP000233
Bacillota
Ligilactobacillus salivarius UCC118 [CP000233]
223480
223553
+
Arg
ACG
[Ensembl]
¡û
>WENV181494295
OGGB01000781
[OGGB] metagenome; Human gut stool
101
176
+
Arg
ACG
[ENA]
¢þ
>WENV181560179
OGJB01010733
[OGJB] metagenome; Human gut stool
107
182
+
Arg
ACG
[ENA]
¢þ
>WENV181581446
OGKA01009405
[OGKA] metagenome; Human gut stool
107
182
+
Arg
ACG
[ENA]
¢þ
>WENV181582142
OGKB01000598
[OGKB] metagenome; Human gut stool
567
642
+
Arg
ACG
[ENA]
¢þ
>WENV182404449
OIEU01027110
[OIEU] human gut metagenome; human gut
6
81
+
Arg
ACG
[ENA]
¢þ
>W141256170
CBVR010000038
Bacillota
Ligilactobacillus salivarius cp400 [CBVR]
19434
19359
-
Arg
ACG
[ENA]
¡û
>WENV182952409
OKVW01000571
[OKVW] human gut metagenome; human gut
1329
1404
+
Arg
ACG
[ENA]
¢þ
>WENV183606524
OODN01011092
[OODN] human gut metagenome; human gut
1095
1170
+
Arg
ACG
[ENA]
¢þ
>WENV183789102
PPYF01379047
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1183
1108
-
Arg
ACG
[ENA]
¢þ
>WENV170636364
JFBN01196299
[JFBN] chicken gut metagenome; ceca of Broiler chicken
111
36
-
Arg
ACG
[ENA]
¢þ
>C181182003
CP029616
Bacillota
Ligilactobacillus salivarius DJ-sa-01 [CP029616]
1202948
1203023
+
Arg
ACG
-
¡û
>W09123184
ACGT01000028
Bacillota
Ligilactobacillus salivarius ATCC 11741 [ACGT]
71909
71834
-
Arg
ACG
[ENA]
¡û
>W1910649425
LXYX01000144
Bacillota
Ligilactobacillus salivarius KLW010 [LXYX]
24042
23967
-
Arg
ACG
[ENA]
¡û
>W1910649486
LXYY01000026
Bacillota
Ligilactobacillus salivarius KLW009 [LXYY]
728
803
+
Arg
ACG
[ENA]
¡û
>W1910649533
LXYZ01000089
Bacillota
Ligilactobacillus salivarius KLW008 [LXYZ]
18967
18892
-
Arg
ACG
[ENA]
¡û
>W1910649566
LXZA01000025
Bacillota
Ligilactobacillus salivarius KLW007 [LXZA]
530
605
+
Arg
ACG
[ENA]
¡û
>W1910649629
LXZB01000026
Bacillota
Ligilactobacillus salivarius KLW006 [LXZB]
214
289
+
Arg
ACG
[ENA]
¡û
>W1910649680
LXZC01000008
Bacillota
Ligilactobacillus salivarius KLW005 [LXZC]
24549
24624
+
Arg
ACG
[ENA]
¡û
>W1910649865
LXZF01000034
Bacillota
Ligilactobacillus salivarius KLW002 [LXZF]
18977
18902
-
Arg
ACG
[ENA]
¡û
>W1910649921
LXZH01000044
Bacillota
Ligilactobacillus salivarius KLF007 [LXZH]
23159
23084
-
Arg
ACG
[ENA]
¡û
>W1910649969
LXZJ01000059
Bacillota
Ligilactobacillus salivarius KLF005 [LXZJ]
209
284
+
Arg
ACG
[ENA]
¡û
>W1910650199
LXZO01000098
Bacillota
Ligilactobacillus salivarius KLA006 [LXZO]
23166
23091
-
Arg
ACG
[ENA]
¡û
>W1910650233
LXZP01000030
Bacillota
Ligilactobacillus salivarius KLA005 [LXZP]
23166
23091
-
Arg
ACG
[ENA]
¡û
>W1910650311
LXZQ01000043
Bacillota
Ligilactobacillus salivarius KLA004 [LXZQ]
23166
23091
-
Arg
ACG
[ENA]
¡û
>W1910650367
LXZR01000041
Bacillota
Ligilactobacillus salivarius KLA003 [LXZR]
23168
23093
-
Arg
ACG
[ENA]
¡û
>W1910650418
LXZS01000033
Bacillota
Ligilactobacillus salivarius KLA002 [LXZS]
23166
23091
-
Arg
ACG
[ENA]
¡û
>W1910650488
LXZT01000041
Bacillota
Ligilactobacillus salivarius KLA001 [LXZT]
23168
23093
-
Arg
ACG
[ENA]
¡û
>W1910874523
NDYW01000011
Bacillota
Ligilactobacillus salivarius L28 [NDYW]
888
963
+
Arg
ACG
[ENA]
¡û
>W1810070422
PECX01000001
Bacillota
Ligilactobacillus salivarius SGL 03 [PECX]
1556692
1556767
+
Arg
ACG
[ENA]
¡û
>W1810185978
PKGN01000034
Bacillota
Ligilactobacillus salivarius 290 [PKGN]
242
317
+
Arg
ACG
[ENA]
¡û
>W1810472393
QAGU01000006
Bacillota
Ligilactobacillus salivarius DS2_12 [QAGU]
122538
122463
-
Arg
ACG
[ENA]
¡û
>W1810472470
QAGV01000006
Bacillota
Ligilactobacillus salivarius DS11_12 [QAGV]
122538
122463
-
Arg
ACG
[ENA]
¡û
>W1810488219
QAZF01000006
Bacillota
Ligilactobacillus salivarius DS3_12 [QAZF]
348
423
+
Arg
ACG
[ENA]
¡û
>W1810488273
QAZG01000006
Bacillota
Ligilactobacillus salivarius DS13_12 [QAZG]
122281
122206
-
Arg
ACG
[ENA]
¡û
>W1810584351
QFAS01000006
Bacillota
Ligilactobacillus salivarius A3iob [QFAS]
933
1008
+
Arg
ACG
[ENA]
¡û
>W1810838192
QSTB01000031
Bacillota
Ligilactobacillus salivarius OM08-20 [QSTB]
938
1013
+
Arg
ACG
[ENA]
¡û
>C151030901
CP007646
Bacillota
Ligilactobacillus salivarius JCM1046 [CP007646]
246054
246129
+
Arg
ACG
[Ensembl]
¡û
>C151082280
CP011403
Bacillota
Ligilactobacillus salivarius str. Ren [CP011403]
222930
223005
+
Arg
ACG
[Ensembl]
¡û
>W10124240
AEBA01000015
Bacillota
Ligilactobacillus salivarius ACS-116-V-Col5a [AEBA]
478
553
+
Arg
ACG
[ENA]
¡û
>C10109017
CP002034
Bacillota
Ligilactobacillus salivarius CECT 5713 [CP002034]
223981
224056
+
Arg
ACG
[Ensembl]
¡û
>W11131128
AEBA01000015
Bacillota
Ligilactobacillus salivarius ACS-116-V-Col5a [AEBA]
478
553
+
Arg
ACG
[ENA]
¡û
>W11167253
AFMN01000001
Bacillota
Ligilactobacillus salivarius NIAS840 [AFMN]
122122
122047
-
Arg
ACG
[ENA]
¡û
>W11168565
AFOI01000001
Bacillota
Ligilactobacillus salivarius GJ-24 [AFOI]
74486
74411
-
Arg
ACG
[ENA]
¡û
>W121045106
AICL01000003
Bacillota
Ligilactobacillus salivarius SMXD51 [AICL]
176068
176143
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK