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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277478 (61 seq.)
>W1711078258
LSMS01000001
Gammaproteobacteria
Colwellia sp. Phe_37 [LSMS]
1377
1301
-
Trp
CCA
[ENA]
¡û
>W1711624649
MPHL01000004
Gammaproteobacteria
Colwellia sp. UCD-KL20 [MPHL]
179051
179127
+
Trp
CCA
[ENA]
¡û
>W1711767360
MUZU01000001
Gammaproteobacteria
Pseudocolwellia agarivorans QM50 [MUZU]
575805
575881
+
Trp
CCA
[ENA]
¡û
>W1711767473
MUZV01000009
Gammaproteobacteria
Cognaticolwellia aestuarii [MUZV]
107337
107261
-
Trp
CCA
[ENA]
¡û
>W1711947409
NBOC01000001
Gammaproteobacteria
Colwellia chukchiensis [NBOC]
692491
692415
-
Trp
CCA
[ENA]
¡û
>W1711947514
NBOD01000008
Gammaproteobacteria
Cognaticolwellia aestuarii [NBOD]
98711
98787
+
Trp
CCA
[ENA]
¡û
>W1711947591
NBOE01000010
Gammaproteobacteria
Colwellia polaris [NBOE]
82795
82719
-
Trp
CCA
[ENA]
¡û
>W1711947630
NBOF01000002
Gammaproteobacteria
Cognaticolwellia mytili [NBOF]
120505
120581
+
Trp
CCA
[ENA]
¡û
>W1711947721
NBOG01000004
Gammaproteobacteria
Cognaticolwellia sediminilitoris [NBOG]
244193
244269
+
Trp
CCA
[ENA]
¡û
>C171034496
CP014943
Gammaproteobacteria
Colwellia sp. PAMC 21821 [CP014943]
3367662
3367586
-
Trp
CCA
-
¡û
>C171034560
CP014944
Gammaproteobacteria
Colwellia sp. PAMC 20917 [CP014944]
3431336
3431260
-
Trp
CCA
-
¡û
>C171108396
CP020465
Gammaproteobacteria
Cognaticolwellia beringensis NB097-1 [CP020465]
3388700
3388624
-
Trp
CCA
-
¡û
>WENV182540211
OJAF01000137
[OJAF] seawater metagenome; Sea water
1306
1382
+
Trp
CCA
[ENA]
¢þ
>WENV182542018
OJAV01000308
[OJAV] seawater metagenome; Sea water
7608
7532
-
Trp
CCA
[ENA]
¢þ
>WENV182542734
OJAZ01001350
[OJAZ] seawater metagenome; Sea water
7043
6967
-
Trp
CCA
[ENA]
¢þ
>WENV182544571
OJBI01000007
[OJBI] seawater metagenome; Sea water
109840
109916
+
Trp
CCA
[ENA]
¢þ
>WENV182549861
OJBZ01000134
[OJBZ] seawater metagenome; Sea water
4919
4843
-
Trp
CCA
[ENA]
¢þ
>WENV182549879
OJBZ01000218
[OJBZ] seawater metagenome; Sea water
2276
2200
-
Trp
CCA
[ENA]
¢þ
>WENV182554645
OJCW01000361
[OJCW] seawater metagenome; Sea water
5315
5239
-
Trp
CCA
[ENA]
¢þ
>WENV182556854
OJDH01000335
[OJDH] seawater metagenome; Sea water
6247
6171
-
Trp
CCA
[ENA]
¢þ
>WENV182558606
OJDN01000010
[OJDN] seawater metagenome; Sea water
17240
17164
-
Trp
CCA
[ENA]
¢þ
>WENV182558796
OJDN01003760
[OJDN] seawater metagenome; Sea water
2191
2115
-
Trp
CCA
[ENA]
¢þ
>WENV182559965
OJDR01000034
[OJDR] seawater metagenome; Sea water
55620
55696
+
Trp
CCA
[ENA]
¢þ
>WENV182562230
OJDZ01000148
[OJDZ] seawater metagenome; Sea water
44043
44119
+
Trp
CCA
[ENA]
¢þ
>WENV182562377
OJDZ01001616
[OJDZ] seawater metagenome; Sea water
3574
3650
+
Trp
CCA
[ENA]
¢þ
>WENV182565161
OJEH01000061
[OJEH] seawater metagenome; Sea water
6311
6387
+
Trp
CCA
[ENA]
¢þ
>WENV182565824
OJEI01000031
[OJEI] seawater metagenome; Sea water
4771
4695
-
Trp
CCA
[ENA]
¢þ
>WENV182567207
OJEN01013963
[OJEN] seawater metagenome; Sea water
608
532
-
Trp
CCA
[ENA]
¢þ
>WENV182568274
OJET01000018
[OJET] seawater metagenome; Sea water
27217
27293
+
Trp
CCA
[ENA]
¢þ
>WENV182575118
OJFU01000003
[OJFU] seawater metagenome; Sea water
20668
20592
-
Trp
CCA
[ENA]
¢þ
>WENV182575509
OJFV01000011
[OJFV] seawater metagenome; Sea water
190984
190908
-
Trp
CCA
[ENA]
¢þ
>WENV182575897
OJFX01000201
[OJFX] seawater metagenome; Sea water
11824
11748
-
Trp
CCA
[ENA]
¢þ
>WENV182579693
OJGT01000007
[OJGT] seawater metagenome; Sea water
65927
65851
-
Trp
CCA
[ENA]
¢þ
>WENV182580819
OJGW01015156
[OJGW] seawater metagenome; Sea water
1237
1313
+
Trp
CCA
[ENA]
¢þ
>WENV182585371
OJHH01013460
[OJHH] seawater metagenome; Sea water
485
409
-
Trp
CCA
[ENA]
¢þ
>WENV182587993
OJHO01000623
[OJHO] seawater metagenome; Sea water
8158
8234
+
Trp
CCA
[ENA]
¢þ
>WENV182590611
OJIJ01000364
[OJIJ] seawater metagenome; Sea water
3511
3435
-
Trp
CCA
[ENA]
¢þ
>WENV183055484
OLHD01000016
[OLHD] seawater metagenome; Sea water
7261
7337
+
Trp
CCA
[ENA]
¢þ
>WENV183055679
OLHF01000033
[OLHF] seawater metagenome; Sea water
36263
36187
-
Trp
CCA
[ENA]
¢þ
>WENV183056373
OLHI01017251
[OLHI] seawater metagenome; Sea water
477
553
+
Trp
CCA
[ENA]
¢þ
>WENV183057660
OLHM01000288
[OLHM] seawater metagenome; Sea water
15149
15073
-
Trp
CCA
[ENA]
¢þ
>WENV183057977
OLHN01000315
[OLHN] seawater metagenome; Sea water
8434
8358
-
Trp
CCA
[ENA]
¢þ
>WENV183064883
OLII01002153
[OLII] seawater metagenome; Sea water
1388
1464
+
Trp
CCA
[ENA]
¢þ
>WENV183522181
OMOM01000497
[OMOM] seawater metagenome; Sea water
16503
16427
-
Trp
CCA
[ENA]
¢þ
>WENV170780338
MAAA01029100
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
326
250
-
Trp
CCA
[ENA]
¢þ
>WENV170781171
MAAB01029596
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
51668
51744
+
Trp
CCA
[ENA]
¢þ
>WENV170781239
MAAB01030070
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
4667
4591
-
Trp
CCA
[ENA]
¢þ
>WENV170781295
MAAB01031336
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1710
1634
-
Trp
CCA
[ENA]
¢þ
>WENV170783129
MAAC01013907
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
9823
9747
-
Trp
CCA
[ENA]
¢þ
>WENV170783143
MAAC01014266
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
1785
1709
-
Trp
CCA
[ENA]
¢þ
>WENV170783657
MAAC01018341
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
16846
16770
-
Trp
CCA
[ENA]
¢þ
>WENV170783673
MAAC01018361
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
6457
6533
+
Trp
CCA
[ENA]
¢þ
>WENV170822139
MDSY01034562
[MDSY] marine metagenome; seawater
3288
3363
+
Trp
CCA
[ENA]
¢þ
>C181169938
CP028924
Gammaproteobacteria
Colwellia sp. Arc7-D [CP028924]
2994548
2994624
+
Trp
CCA
-
¡û
>C191128351
CP034660
Gammaproteobacteria
Colwellia sp. Arc7-635 [CP034660]
3310984
3311060
+
Trp
CCA
-
¡û
>W1810701349
QMED01000006
Gammaproteobacteria
Algibacillus agarilyticus RQJ05 [QMED]
15191
15115
-
Trp
CCA
[ENA]
¡û
>W1810701378
QMED01000052
Gammaproteobacteria
Algibacillus agarilyticus RQJ05 [QMED]
16655
16579
-
Trp
CCA
[ENA]
¡û
>W1511322690
JQDZ01000018
Gammaproteobacteria
Thalassotalea sp. ND16A [JQDZ]
91371
91447
+
Trp
CCA
[ENA]
¡û
>W1511322734
JQDZ01000107
Gammaproteobacteria
Thalassotalea sp. ND16A [JQDZ]
16740
16664
-
Trp
CCA
[ENA]
¡û
>W1610917274
LSMS01000001
Gammaproteobacteria
Colwellia sp. Phe_37 [LSMS]
1377
1301
-
Trp
CCA
[ENA]
¡û
>W1710545220
FOBI01000001
Gammaproteobacteria
Colwellia chukchiensis [FOBI]
86162
86238
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK