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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277758 (105 seq.)
>W1711484308
MKCO01000062
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
94
170
+
Ile
GAT
[ENA]
¡û
>C171088960
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
2388601
2388525
-
Ile
GAT
-
¡û
>C171088967
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
2095080
2095004
-
Ile
GAT
-
¡û
>C171088982
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
1936262
1936186
-
Ile
GAT
-
¡û
>WENV180042328
LQAE01000697
[LQAE] bioreactor metagenome; bioreactor_1 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
2089
2165
+
Ile
GAT
[ENA]
¢þ
>WENV180042859
LQAG01007277
[LQAG] bioreactor metagenome; bioreactor_3 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
351
427
+
Ile
GAT
[ENA]
¢þ
>WENV180043131
LQAH01003489
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
340
264
-
Ile
GAT
[ENA]
¢þ
>WENV180043605
LQAI01002272
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
2432
2508
+
Ile
GAT
[ENA]
¢þ
>WENV180044043
LQAJ01000592
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
1810
1734
-
Ile
GAT
[ENA]
¢þ
>WENV180275359
OBHT01014190
[OBHT] metagenome; hydrothermal vent
60
136
+
Ile
GAT
[ENA]
¢þ
>WENV180376831
OBOM01109216
[OBOM] marine metagenome; Seawater
97
21
-
Ile
GAT
[ENA]
¢þ
>WENV180581738
OCMK01059798
[OCMK] metagenome; diffuse fluid
114
190
+
Ile
GAT
[ENA]
¢þ
>WENV181213115
OFBU01010708
[OFBU] metagenome; hydrothermal vent
147
223
+
Ile
GAT
[ENA]
¢þ
>WENV181215652
OFCA01006286
[OFCA] metagenome; hydrothermal vent
595
519
-
Ile
GAT
[ENA]
¢þ
>WENV182568292
OJET01000087
[OJET] seawater metagenome; Sea water
3303
3227
-
Ile
GAT
[ENA]
¢þ
>WENV182590617
OJIJ01000405
[OJIJ] seawater metagenome; Sea water
2011
2087
+
Ile
GAT
[ENA]
¢þ
>WENV183060103
OLHW01013908
[OLHW] seawater metagenome; Sea water
74
150
+
Ile
GAT
[ENA]
¢þ
>WENV183715945
PDWI01276015
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
248
324
+
Ile
GAT
[ENA]
¢þ
>WENV183716375
PDWI01304785
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
121
197
+
Ile
GAT
[ENA]
¢þ
>WENV183721420
PDWJ01068437
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1172
1096
-
Ile
GAT
[ENA]
¢þ
>WENV183722241
PDWJ01114499
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1006
930
-
Ile
GAT
[ENA]
¢þ
>WENV170012489
ASRK01006662
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
320
396
+
Ile
GAT
[ENA]
¢þ
>WENV170012577
ASRL01003835
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
170
94
-
Ile
GAT
[ENA]
¢þ
>WENV170012636
ASRM01008848
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
170
94
-
Ile
GAT
[ENA]
¢þ
>WENV170012710
ASRN01003346
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
908
832
-
Ile
GAT
[ENA]
¢þ
>WENV170012792
ASRO01002189
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
908
832
-
Ile
GAT
[ENA]
¢þ
>WENV170012866
ASRP01004001
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
140
216
+
Ile
GAT
[ENA]
¢þ
>WENV170012987
ASRQ01001679
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
140
216
+
Ile
GAT
[ENA]
¢þ
>WENV170014347
AYRE01005359
[AYRE] bioreactor metagenome; day 6 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
250
174
-
Ile
GAT
[ENA]
¢þ
>WENV170014483
AYRG01002309
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
140
216
+
Ile
GAT
[ENA]
¢þ
>WENV170635327
JDSF01003121
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
77
1
-
Ile
GAT
[ENA]
¢þ
>WENV170635408
JDSF01014338
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
193
269
+
Ile
GAT
[ENA]
¢þ
>WENV170635594
JDSG01003094
[JDSG] bioreactor metagenome; continuous culture bioreactor short generation time transfer1; day 52 after inoculation
78
2
-
Ile
GAT
[ENA]
¢þ
>WENV170646433
JQGR01003905
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
496
572
+
Ile
GAT
[ENA]
¢þ
>WENV170646461
JQGR01008561
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
211
135
-
Ile
GAT
[ENA]
¢þ
>WENV170704251
LLEJ01000624
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
2030
2106
+
Ile
GAT
[ENA]
¢þ
>WENV170704454
LLEK01000564
[LLEK] bioreactor metagenome; day79 25degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
3280
3204
-
Ile
GAT
[ENA]
¢þ
>WENV170704677
LLEL01033499
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
202
126
-
Ile
GAT
[ENA]
¢þ
>WENV170704920
LLEN01015360
[LLEN] bioreactor metagenome; day86 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
21
97
+
Ile
GAT
[ENA]
¢þ
>WENV170779293
LZQN01000213
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
3141
3065
-
Ile
GAT
[ENA]
¢þ
>WENV170782051
MAAC01007065
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
1587
1663
+
Ile
GAT
[ENA]
¢þ
>C181196925
CP031217
Campylobacterota
Halarcobacter bivalviorum LMG 26154 [CP031217]
343269
343345
+
Ile
GAT
-
¡û
>C181196941
CP031217
Campylobacterota
Halarcobacter bivalviorum LMG 26154 [CP031217]
2599139
2599063
-
Ile
GAT
-
¡û
>C181196946
CP031217
Campylobacterota
Halarcobacter bivalviorum LMG 26154 [CP031217]
1961578
1961502
-
Ile
GAT
-
¡û
>C181196948
CP031217
Campylobacterota
Halarcobacter bivalviorum LMG 26154 [CP031217]
1945378
1945302
-
Ile
GAT
-
¡û
>C181196965
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
168180
168256
+
Ile
GAT
-
¡û
>C181196972
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
232333
232409
+
Ile
GAT
-
¡û
>C181196977
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
2758390
2758314
-
Ile
GAT
-
¡û
>C181196982
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
2298418
2298342
-
Ile
GAT
-
¡û
>C181196989
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
2006453
2006377
-
Ile
GAT
-
¡û
>C181197000
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
1972329
1972253
-
Ile
GAT
-
¡û
>C191084486
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
2750972
2750896
-
Ile
GAT
-
¡û
>C191084491
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
2332442
2332366
-
Ile
GAT
-
¡û
>C191084498
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
2008447
2008371
-
Ile
GAT
-
¡û
>C191084630
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
168938
169014
+
Ile
GAT
-
¡û
>C191084641
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
203140
203216
+
Ile
GAT
-
¡û
>C191084648
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
267362
267438
+
Ile
GAT
-
¡û
>C191084652
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
2862850
2862774
-
Ile
GAT
-
¡û
>C191084657
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
2411349
2411273
-
Ile
GAT
-
¡û
>C191084664
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
2082267
2082191
-
Ile
GAT
-
¡û
>C191147181
CP035928
Campylobacterota
Malaciobacter pacificus LMG 26638 [CP035928]
2571619
2571543
-
Ile
GAT
-
¡û
>C191147186
CP035928
Campylobacterota
Malaciobacter pacificus LMG 26638 [CP035928]
2156194
2156118
-
Ile
GAT
-
¡û
>C191147203
CP035928
Campylobacterota
Malaciobacter pacificus LMG 26638 [CP035928]
1725601
1725525
-
Ile
GAT
-
¡û
>C191186398
CP041070
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [CP041070]
2936723
2936647
-
Ile
GAT
-
¡û
>C191186400
CP041070
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [CP041070]
2930345
2930269
-
Ile
GAT
-
¡û
>C191186405
CP041070
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [CP041070]
2519715
2519639
-
Ile
GAT
-
¡û
>C191186412
CP041070
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [CP041070]
2188587
2188511
-
Ile
GAT
-
¡û
>W1910810902
MUXE01000030
Campylobacterota
Arcobacter caeni RW17-10 [MUXE]
3861
3785
-
Ile
GAT
[ENA]
¡û
>W1911413092
NWVW01000030
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
1866
1942
+
Ile
GAT
[ENA]
¡û
>W1911413141
NWVX01000054
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
1853
1929
+
Ile
GAT
[ENA]
¡û
>W1911419353
NXAO01000004
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
1895
1971
+
Ile
GAT
[ENA]
¡û
>W1911424202
NXFY01000075
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
143
219
+
Ile
GAT
[ENA]
¡û
>W1911426255
NXIE01000010
Campylobacterota
Halarcobacter mediterraneus F156-34 [NXIE]
1975
2051
+
Ile
GAT
[ENA]
¡û
>W1911426258
NXIF01000001
Campylobacterota
Malaciobacter halophilus DSM 18005 [NXIF]
198
122
-
Ile
GAT
[ENA]
¡û
>W1911576170
PDJU01000019
Campylobacterota
Arcobacter sp. F155 [PDJU]
1806
1882
+
Ile
GAT
[ENA]
¡û
>W1911576225
PDJV01000039
Campylobacterota
Arcobacter sp. F2176 [PDJV]
1877
1953
+
Ile
GAT
[ENA]
¡û
>W1911576325
PDJX01000060
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
408
332
-
Ile
GAT
[ENA]
¡û
>W1911576386
PDJY01000067
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
3617
3541
-
Ile
GAT
[ENA]
¡û
>W1911576520
PDKC01000081
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
143
219
+
Ile
GAT
[ENA]
¡û
>W1911576604
PDKE01000022
Campylobacterota
Arcobacter sp. CECT 8989 [PDKE]
1807
1883
+
Ile
GAT
[ENA]
¡û
>W1911576635
PDKF01000006
Campylobacterota
Arcobacter sp. CECT 8983 [PDKF]
1940
2016
+
Ile
GAT
[ENA]
¡û
>W1911576691
PDKG01000030
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
409
333
-
Ile
GAT
[ENA]
¡û
>W1911576814
PDKJ01000033
Campylobacterota
Halarcobacter ebronensis CECT 8993 [PDKJ]
1917
1993
+
Ile
GAT
[ENA]
¡û
>W1911576855
PDKK01000026
Campylobacterota
Halarcobacter ebronensis CECT 8441 [PDKK]
1953
2029
+
Ile
GAT
[ENA]
¡û
>W1911576894
PDKL01000016
Campylobacterota
Halarcobacter bivalviorum F118-4 [PDKL]
1738
1814
+
Ile
GAT
[ENA]
¡û
>W1911576935
PDKM01000012
Campylobacterota
Halarcobacter bivalviorum CECT 7835 [PDKM]
3499
3423
-
Ile
GAT
[ENA]
¡û
>W1911576984
PDKN01000020
Campylobacterota
Candidatus Marinarcus aquaticus CECT 8987 [PDKN]
405
329
-
Ile
GAT
[ENA]
¡û
>W1911577025
PDKO01000024
Campylobacterota
Halarcobacter anaerophilus DSM 24636 [PDKO]
3711
3635
-
Ile
GAT
[ENA]
¡û
>W1911717862
QQTC01000002
Campylobacterota
Arcobacter sp. HD9-500m-PIT-SAG03 [QQTC]
2655
2579
-
Ile
GAT
[ENA]
¡û
>W1810295937
PTIW01000054
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
1663
1739
+
Ile
GAT
[ENA]
¡û
>W1810462593
PZYW01000028
Campylobacterota
Poseidonibacter lekithochrous LMG 28652 [PZYW]
94
170
+
Ile
GAT
[ENA]
¡û
>C10100545
CP001999
Campylobacterota
Arcobacter nitrofigilis DSM 7299 [CP001999]
239556
239632
+
Ile
GAT
[Ensembl]
¡û
>C10100564
CP001999
Campylobacterota
Arcobacter nitrofigilis DSM 7299 [CP001999]
3087246
3087170
-
Ile
GAT
[Ensembl]
¡û
>C10100567
CP001999
Campylobacterota
Arcobacter nitrofigilis DSM 7299 [CP001999]
2660223
2660147
-
Ile
GAT
[Ensembl]
¡û
>C10100577
CP001999
Campylobacterota
Arcobacter nitrofigilis DSM 7299 [CP001999]
2328828
2328752
-
Ile
GAT
[Ensembl]
¡û
>W1511517380
JXXG01000002
Campylobacterota
Halarcobacter anaerophilus IR-1 [JXXG]
227042
227118
+
Ile
GAT
[ENA]
¡û
>W1511517387
JXXG01000002
Campylobacterota
Halarcobacter anaerophilus IR-1 [JXXG]
557089
557165
+
Ile
GAT
[ENA]
¡û
>W1511517397
JXXG01000003
Campylobacterota
Halarcobacter anaerophilus IR-1 [JXXG]
361448
361524
+
Ile
GAT
[ENA]
¡û
>W1511517399
JXXG01000003
Campylobacterota
Halarcobacter anaerophilus IR-1 [JXXG]
367673
367749
+
Ile
GAT
[ENA]
¡û
>WENV069363
AACY023763427
Marine microbial communities from Global Ocean Sampling (GOS)
1115
1037
-
Ile
GAT
[ENA]
>WENV077987
AAFY01002324
Fossil microbial community from Whale Fall (Santa Cruz Basin)
1179
1101
-
Ile
GAT
[ENA]
>WENV078128
AAFY01024636
Fossil microbial community from Whale Fall (Santa Cruz Basin)
214
292
+
Ile
GAT
[ENA]
>WENV078168
AAFZ01002026
Fossil microbial community from Whale Fall (Santa Cruz Basin)
1050
972
-
Ile
GAT
[ENA]
>W1710082857
BDIR01000004
Campylobacterota
Arcobacter sp. LA11 [BDIR]
225780
225856
+
Ile
GAT
[ENA]
¡û
>W1710602861
FUYO01000053
Campylobacterota
Malaciobacter marinus [FUYO]
1631
1707
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK