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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277906 (74 seq.)
>W1711128523
LUSM01000083
Bacillota
Lactiplantibacillus plantarum [LUSM]
285
211
-
Asn
GTT
[ENA]
¡û
>W1711132317
LUWB01000004
Bacillota
Lactiplantibacillus plantarum [LUWB]
18531
18605
+
Asn
GTT
[ENA]
¡û
>W1711132611
LUWF01000085
Bacillota
Lactiplantibacillus plantarum [LUWF]
111716
111790
+
Asn
GTT
[ENA]
¡û
>W1711132650
LUWG01000055
Bacillota
Lactiplantibacillus plantarum [LUWG]
111715
111789
+
Asn
GTT
[ENA]
¡û
>W1711133088
LUWO01000004
Bacillota
Lactiplantibacillus plantarum [LUWO]
170020
169946
-
Asn
GTT
[ENA]
¡û
>W1711133312
LUWR01000053
Bacillota
Lactiplantibacillus plantarum [LUWR]
295061
295135
+
Asn
GTT
[ENA]
¡û
>W1711134172
LUXG01000005
Bacillota
Lactiplantibacillus plantarum [LUXG]
295061
295135
+
Asn
GTT
[ENA]
¡û
>W1711134467
LUXL01000007
Bacillota
Lactiplantibacillus plantarum [LUXL]
6793
6865
+
Asn
GTT
[ENA]
¡û
>W1711134622
LUXN01000032
Bacillota
Lactiplantibacillus plantarum [LUXN]
311501
311427
-
Asn
GTT
[ENA]
¡û
>W1711305440
MAMT01000008
Bacillota
Lactiplantibacillus plantarum [MAMT]
54401
54475
+
Asn
GTT
[ENA]
¡û
>W1711346072
MCOL01000001
Bacillota
Lactiplantibacillus plantarum [MCOL]
645304
645379
+
Asn
GTT
[ENA]
¡û
>W1711484869
MKDF01000011
Bacillota
Lactiplantibacillus plantarum [MKDF]
170548
170622
+
Asn
GTT
[ENA]
¡û
>W1711485075
MKDK01000002
Bacillota
Lactiplantibacillus plantarum [MKDK]
57175
57101
-
Asn
GTT
[ENA]
¡û
>W1711485212
MKDQ01000028
Bacillota
Lactiplantibacillus plantarum [MKDQ]
170
246
+
Asn
GTT
[ENA]
¡û
>W1711485258
MKDS01000024
Bacillota
Lactiplantibacillus plantarum [MKDS]
19209
19133
-
Asn
GTT
[ENA]
¡û
>W1711485308
MKDT01000035
Bacillota
Lactiplantibacillus plantarum [MKDT]
19209
19133
-
Asn
GTT
[ENA]
¡û
>W1711485402
MKDV01000066
Bacillota
Lactiplantibacillus plantarum [MKDV]
646
722
+
Asn
GTT
[ENA]
¡û
>W1711485417
MKDV01000075
Bacillota
Lactiplantibacillus plantarum [MKDV]
422
496
+
Asn
GTT
[ENA]
¡û
>W1711485646
MKEB01000110
Bacillota
Lactiplantibacillus plantarum [MKEB]
797
871
+
Asn
GTT
[ENA]
¡û
>W1711485659
MKEC01000014
Bacillota
Lactiplantibacillus plantarum [MKEC]
39101
39175
+
Asn
GTT
[ENA]
¡û
>W1711485761
MKED01000058
Bacillota
Lactiplantibacillus plantarum [MKED]
36147
36073
-
Asn
GTT
[ENA]
¡û
>W1711485772
MKEE01000011
Bacillota
Lactiplantibacillus plantarum [MKEE]
35058
34984
-
Asn
GTT
[ENA]
¡û
>W1711485912
MKEG01000035
Bacillota
Lactiplantibacillus plantarum [MKEG]
21107
21033
-
Asn
GTT
[ENA]
¡û
>W1711485928
MKEG01000053
Bacillota
Lactiplantibacillus plantarum [MKEG]
20719
20645
-
Asn
GTT
[ENA]
¡û
>C171026328
CP013749
Bacillota
Lactiplantibacillus plantarum KP [CP013749]
1825655
1825729
+
Asn
GTT
-
¡û
>C171061489
CP017354
Bacillota
Lactiplantibacillus plantarum TMW 1.25 [CP017354]
2126200
2126126
-
Asn
GTT
-
¡û
>W141180637
AYGX01000230
Bacillota
Lactiplantibacillus fabifermentans DSM 21115 [AYGX]
159
85
-
Asn
GTT
[ENA]
¡û
>WENV183217130
OLQI01000033
[OLQI] human gut metagenome; faeces
95865
95791
-
Asn
GTT
[ENA]
¢þ
>WENV170659370
JXWR01004466
[JXWR] soil metagenome; rice field; ambient CO2
781
707
-
Asn
GTT
[ENA]
¢þ
>C181043554
CP020093
Bacillota
Lactiplantibacillus plantarum K25 [CP020093]
588241
588315
+
Asn
GTT
-
¡û
>C181054629
CP021932
Bacillota
Lactiplantibacillus plantarum TMW 1.1478 [CP021932]
2239624
2239552
-
Asn
GTT
-
¡û
>C181076799
CP023174
Bacillota
Lactiplantibacillus plantarum BDGP2 [CP023174]
199545
199619
+
Asn
GTT
-
¡û
>C181076802
CP023174
Bacillota
Lactiplantibacillus plantarum BDGP2 [CP023174]
258568
258642
+
Asn
GTT
-
¡û
>C191073710
CP031140
Bacillota
Lactiplantibacillus plantarum UNQLp11 [CP031140]
1250520
1250594
+
Asn
GTT
-
¡û
>C191176848
CP040374
Bacillota
Lactiplantibacillus plantarum subsp. plantarum SKO-001 [CP040374]
2137674
2137600
-
Asn
GTT
-
¡û
>W141565739
JIBX01000024
Bacillota
Lactiplantibacillus plantarum [JIBX]
198898
198824
-
Asn
GTT
[ENA]
¡û
>W1910177706
BJDY01000005
Bacillota
Lactiplantibacillus mudanjiangensis 11050 [BJDY]
1451
1377
-
Asn
GTT
[ENA]
¡û
>W1910211135
FMBQ01000020
Bacillota
Lactiplantibacillus plantarum [FMBQ]
178065
177991
-
Asn
GTT
[ENA]
¡û
>W1910751853
MKDB01000004
Bacillota
Lactiplantibacillus plantarum RI-393 [MKDB]
119499
119573
+
Asn
GTT
[ENA]
¡û
>W1910752136
MKDX01000048
Bacillota
Lactiplantibacillus plantarum RI-265 [MKDX]
4793
4867
+
Asn
GTT
[ENA]
¡û
>W1910797742
MSUE01000031
Bacillota
Lactiplantibacillus plantarum M4-1 [MSUE]
32033
32107
+
Asn
GTT
[ENA]
¡û
>W1910798148
MSUL01000336
Bacillota
Lactiplantibacillus plantarum Y2-4 [MSUL]
8983
8909
-
Asn
GTT
[ENA]
¡û
>W1910798499
MSUS01000031
Bacillota
Lactiplantibacillus plantarum A3-2 [MSUS]
26002
25928
-
Asn
GTT
[ENA]
¡û
>W1910799055
MSVD01000029
Bacillota
Lactiplantibacillus plantarum B1-1 [MSVD]
24619
24545
-
Asn
GTT
[ENA]
¡û
>W1910799621
MSVO01000034
Bacillota
Lactiplantibacillus plantarum B6-2 [MSVO]
24619
24545
-
Asn
GTT
[ENA]
¡û
>W1910799865
MSVT01000029
Bacillota
Lactiplantibacillus plantarum H31.1.1 [MSVT]
24619
24545
-
Asn
GTT
[ENA]
¡û
>W1910800357
MSWC01000049
Bacillota
Lactiplantibacillus plantarum R2.2.2 [MSWC]
1975
2049
+
Asn
GTT
[ENA]
¡û
>W1910800388
MSWD01000045
Bacillota
Lactiplantibacillus plantarum R2.3.1 [MSWD]
26002
25928
-
Asn
GTT
[ENA]
¡û
>W1910800563
MSWG01000094
Bacillota
Lactiplantibacillus plantarum R3.1.2 [MSWG]
1640
1714
+
Asn
GTT
[ENA]
¡û
>W1910800950
MSWO01000039
Bacillota
Lactiplantibacillus plantarum R4.3.1 [MSWO]
26002
25928
-
Asn
GTT
[ENA]
¡û
>W1910801321
MSWV01000069
Bacillota
Lactiplantibacillus plantarum R5.3.2 [MSWV]
25832
25758
-
Asn
GTT
[ENA]
¡û
>W1910801660
MSXC01000046
Bacillota
Lactiplantibacillus plantarum R7.1.1 [MSXC]
26002
25928
-
Asn
GTT
[ENA]
¡û
>W1910801988
MSXI01000065
Bacillota
Lactiplantibacillus plantarum R14.2.1 [MSXI]
26002
25928
-
Asn
GTT
[ENA]
¡û
>W1910802124
MSXL01000026
Bacillota
Lactiplantibacillus plantarum R14.3.2 [MSXL]
25832
25758
-
Asn
GTT
[ENA]
¡û
>W1911179885
NQNI01000013
Bacillota
Lactiplantibacillus plantarum Lp820 [NQNI]
175886
175812
-
Asn
GTT
[ENA]
¡û
>W1911767499
QXEU01000029
Bacillota
Lactiplantibacillus plantarum TJA26B [QXEU]
1679
1605
-
Asn
GTT
[ENA]
¡û
>W1810452705
PZQK01000024
Bacillota
Lactiplantibacillus plantarum PFC-311 [PZQK]
51768
51842
+
Asn
GTT
[ENA]
¡û
>W1810762471
QPQR01000002
Bacillota
Lactiplantibacillus plantarum CCFM605 [QPQR]
308357
308431
+
Asn
GTT
[ENA]
¡û
>W1810762556
QPQS01000020
Bacillota
Lactiplantibacillus plantarum CGMCC12436 [QPQS]
30610
30536
-
Asn
GTT
[ENA]
¡û
>W1810789848
QRHF01000003
Bacillota
Lactiplantibacillus plantarum AM25-20AC [QRHF]
188941
189015
+
Asn
GTT
[ENA]
¡û
>W1511387550
JSUX01000035
Bacillota
Lactiplantibacillus plantarum TIFN101 [JSUX]
1958
2032
+
Asn
GTT
[ENA]
¡û
>C161092447
CP015966
Bacillota
Lactiplantibacillus plantarum LZ206 [CP015966]
342946
343020
+
Asn
GTT
-
¡û
>C131012649
CP004082
Bacillota
Lactiplantibacillus plantarum ZJ316 [CP004082]
2431468
2431394
-
Asn
GTT
[Ensembl]
¡û
>W1610513992
FLYG01000003
Bacillota
Lactiplantibacillus pentosus MP-10 [FLYG]
2471682
2471608
-
Asn
GTT
[ENA]
¡û
>W1610940016
LUSM01000083
Bacillota
Lactiplantibacillus plantarum [LUSM]
285
211
-
Asn
GTT
[ENA]
¡û
>W1610943390
LUWB01000004
Bacillota
Lactiplantibacillus plantarum [LUWB]
18531
18605
+
Asn
GTT
[ENA]
¡û
>W1610943684
LUWF01000085
Bacillota
Lactiplantibacillus plantarum [LUWF]
111716
111790
+
Asn
GTT
[ENA]
¡û
>W1610943723
LUWG01000055
Bacillota
Lactiplantibacillus plantarum [LUWG]
111715
111789
+
Asn
GTT
[ENA]
¡û
>W1610944161
LUWO01000004
Bacillota
Lactiplantibacillus plantarum [LUWO]
170020
169946
-
Asn
GTT
[ENA]
¡û
>W1610944385
LUWR01000053
Bacillota
Lactiplantibacillus plantarum [LUWR]
295061
295135
+
Asn
GTT
[ENA]
¡û
>W1610945245
LUXG01000005
Bacillota
Lactiplantibacillus plantarum [LUXG]
295061
295135
+
Asn
GTT
[ENA]
¡û
>W1610945540
LUXL01000007
Bacillota
Lactiplantibacillus plantarum [LUXL]
6793
6865
+
Asn
GTT
[ENA]
¡û
>W1610945695
LUXN01000032
Bacillota
Lactiplantibacillus plantarum [LUXN]
311501
311427
-
Asn
GTT
[ENA]
¡û
>W1710716687
LEBT01000005
Bacillota
Lactiplantibacillus plantarum [LEBT]
98516
98590
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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