This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277966 (136 seq.)
>W1711090547
LTAV01000001
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
3
79
+
Met
CAT
[ENA]
¡û
>W1711090593
LTAV01000023
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
258
182
-
Met
CAT
[ENA]
¡û
>W1711090595
LTAV01000023
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
77
1
-
Met
CAT
[ENA]
¡û
>W1711090624
LTAV01000067
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
261
185
-
Met
CAT
[ENA]
¡û
>W1711090626
LTAV01000067
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
75
1
-
Met
CAT
[ENA]
¡û
>W1711090651
LTAW01000006
Gammaproteobacteria
Marinomonas atlantica [LTAW]
4
80
+
Met
CAT
[ENA]
¡û
>W1711090679
LTAW01000013
Gammaproteobacteria
Marinomonas atlantica [LTAW]
74
1
-
Met
CAT
[ENA]
¡û
>W1711090750
LTAX01000030
Gammaproteobacteria
Marinomonas gallaica [LTAX]
165
89
-
Met
CAT
[ENA]
¡û
>W1711090776
LTAX01000092
Gammaproteobacteria
Marinomonas gallaica [LTAX]
165
89
-
Met
CAT
[ENA]
¡û
>W1711425106
MIEQ01000022
Gammaproteobacteria
Motiliproteus sp. MSK22-1 [MIEQ]
101650
101574
-
Met
CAT
[ENA]
¡û
>W1712081308
NHNK01000024
Gammaproteobacteria
Marinomonas agarivorans QM202 [NHNK]
35934
35858
-
Met
CAT
[ENA]
¡û
>W1712081310
NHNK01000024
Gammaproteobacteria
Marinomonas agarivorans QM202 [NHNK]
35746
35670
-
Met
CAT
[ENA]
¡û
>C013001
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
4071878
4071954
+
Met
CAT
[Ensembl]
¡û
>C013003
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
4072073
4072149
+
Met
CAT
[Ensembl]
¡û
>w013349
AANE01000034
Gammaproteobacteria
Marinomonas sp. MED121 [AANE]
1185
1261
+
Met
CAT
[ENA]
¡û
>w013347
AANE01000034
Gammaproteobacteria
Marinomonas sp. MED121 [AANE]
994
1072
+
Met
CAT
[ENA]
¡û
>WENV180042135
LNFX01000387
[LNFX] marine sediment metagenome; antarctic beach sand mud
3874
3950
+
Met
CAT
[ENA]
¢þ
>WENV180367541
OBOE01138984
[OBOE] marine metagenome; ENVO:00002010
211
287
+
Met
CAT
[ENA]
¢þ
>WENV180383171
OBOU01005882
[OBOU] marine metagenome; ENV:00002010
508
584
+
Met
CAT
[ENA]
¢þ
>WENV180396402
OBPV01002016
[OBPV] marine metagenome; ENVO:00002010
195
119
-
Met
CAT
[ENA]
¢þ
>WENV181313640
OFJH01000028
[OFJH] marine metagenome; seawater
852
928
+
Met
CAT
[ENA]
¢þ
>WENV181325382
OFLJ01000149
[OFLJ] seawater metagenome; seawater
3111
3035
-
Met
CAT
[ENA]
¢þ
>WENV181391475
OFRT01011069
[OFRT] seawater metagenome; seawater
514
590
+
Met
CAT
[ENA]
¢þ
>WENV181392903
OFRX01015359
[OFRX] seawater metagenome; seawater
578
502
-
Met
CAT
[ENA]
¢þ
>W141191407
AYOZ01000015
Gammaproteobacteria
Marinomonas profundimaris D104 [AYOZ]
28009
28085
+
Met
CAT
[ENA]
¡û
>W141191409
AYOZ01000015
Gammaproteobacteria
Marinomonas profundimaris D104 [AYOZ]
28206
28282
+
Met
CAT
[ENA]
¡û
>WENV182540498
OJAJ01004066
[OJAJ] seawater metagenome; Sea water
1084
1008
-
Met
CAT
[ENA]
¢þ
>WENV182550345
OJCA01000368
[OJCA] seawater metagenome; Sea water
8986
8910
-
Met
CAT
[ENA]
¢þ
>WENV182551561
OJCD01001931
[OJCD] seawater metagenome; Sea water
611
535
-
Met
CAT
[ENA]
¢þ
>WENV182554072
OJCT01000508
[OJCT] seawater metagenome; Sea water
2870
2794
-
Met
CAT
[ENA]
¢þ
>WENV182554457
OJCU01006932
[OJCU] seawater metagenome; Sea water
559
483
-
Met
CAT
[ENA]
¢þ
>WENV182563417
OJEC01000067
[OJEC] seawater metagenome; Sea water
3643
3719
+
Met
CAT
[ENA]
¢þ
>WENV182564875
OJEF01011743
[OJEF] seawater metagenome; Sea water
1030
954
-
Met
CAT
[ENA]
¢þ
>WENV182565397
OJEH01003739
[OJEH] seawater metagenome; Sea water
967
1043
+
Met
CAT
[ENA]
¢þ
>WENV182568505
OJEU01008476
[OJEU] seawater metagenome; Sea water
148
72
-
Met
CAT
[ENA]
¢þ
>WENV182569374
OJEZ01000023
[OJEZ] seawater metagenome; Sea water
18932
18856
-
Met
CAT
[ENA]
¢þ
>WENV182570273
OJFC01000733
[OJFC] seawater metagenome; Sea water
5564
5488
-
Met
CAT
[ENA]
¢þ
>WENV182583963
OJHF01001746
[OJHF] seawater metagenome; Sea water
3116
3040
-
Met
CAT
[ENA]
¢þ
>WENV182587090
OJHL01000548
[OJHL] seawater metagenome; Sea water
2049
1973
-
Met
CAT
[ENA]
¢þ
>WENV182589721
OJIG01000096
[OJIG] seawater metagenome; Sea water
3662
3738
+
Met
CAT
[ENA]
¢þ
>WENV182590037
OJIH01000029
[OJIH] seawater metagenome; Sea water
7299
7223
-
Met
CAT
[ENA]
¢þ
>WENV182592218
OJIQ01003861
[OJIQ] seawater metagenome; Sea water
157
81
-
Met
CAT
[ENA]
¢þ
>WENV182594194
OJIV01001369
[OJIV] seawater metagenome; Sea water
1390
1466
+
Met
CAT
[ENA]
¢þ
>W141284706
JAMB01000020
Gammaproteobacteria
Marinomonas ushuaiensis DSM 15871 [JAMB]
12728
12652
-
Met
CAT
[ENA]
¡û
>W141284708
JAMB01000020
Gammaproteobacteria
Marinomonas ushuaiensis DSM 15871 [JAMB]
12527
12451
-
Met
CAT
[ENA]
¡û
>WENV183060335
OLHX01003498
[OLHX] seawater metagenome; Sea water
970
894
-
Met
CAT
[ENA]
¢þ
>WENV183618982
OOFP01011063
[OOFP] marine metagenome; seawater
514
590
+
Met
CAT
[ENA]
¢þ
>WENV183619244
OOFQ01000140
[OOFQ] marine metagenome; seawater
3111
3035
-
Met
CAT
[ENA]
¢þ
>WENV183625061
OOGF01000187
[OOGF] marine metagenome; seawater
2676
2752
+
Met
CAT
[ENA]
¢þ
>WENV183629266
OOGP01015442
[OOGP] marine metagenome; seawater
578
502
-
Met
CAT
[ENA]
¢þ
>WENV183630280
OOGS01001026
[OOGS] marine metagenome; seawater
718
642
-
Met
CAT
[ENA]
¢þ
>WENV183710952
PDWI01057227
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3078
3154
+
Met
CAT
[ENA]
¢þ
>WENV183711714
PDWI01077957
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
68
144
+
Met
CAT
[ENA]
¢þ
>WENV183716896
PDWJ01000248
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
79300
79376
+
Met
CAT
[ENA]
¢þ
>WENV183719327
PDWJ01012387
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
5381
5305
-
Met
CAT
[ENA]
¢þ
>WENV183721277
PDWJ01062142
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2271
2195
-
Met
CAT
[ENA]
¢þ
>WENV183721458
PDWJ01070650
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
184
260
+
Met
CAT
[ENA]
¢þ
>WENV170150757
CEOC01154193
[CEOC] marine metagenome genome assembly TARA_036_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
493
417
-
Met
CAT
[ENA]
¢þ
>WENV170167151
CEOO01175000
[CEOO] marine metagenome genome assembly TARA_036_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
154
78
-
Met
CAT
[ENA]
¢þ
>WENV170326490
CESU01004279
[CESU] marine metagenome genome assembly TARA_082_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
491
567
+
Met
CAT
[ENA]
¢þ
>WENV170538685
CEWR01106122
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5072
4996
-
Met
CAT
[ENA]
¢þ
>WENV170567877
FLMP01008506
[FLMP] seawater metagenome; seawater
1954
1878
-
Met
CAT
[ENA]
¢þ
>WENV170613326
FUWD012796613
[FUWD] metagenome; unknown
608
684
+
Met
CAT
[ENA]
¢þ
>WENV170704685
LLEL01035867
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
181
105
-
Met
CAT
[ENA]
¢þ
>WENV170821018
MDSY01014938
[MDSY] marine metagenome; seawater
10975
11051
+
Met
CAT
[ENA]
¢þ
>WENV170834224
MDSZ01093963
[MDSZ] marine metagenome; seawater
65925
66001
+
Met
CAT
[ENA]
¢þ
>WENV170952345
MEHZ011593657
[MEHZ] marine metagenome; marine surface water
1195
1271
+
Met
CAT
[ENA]
¢þ
>C191039800
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
3191221
3191297
+
Met
CAT
-
¡û
>C191039802
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
3191421
3191497
+
Met
CAT
-
¡û
>W09106453
AAVH01000007
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
222977
223053
+
Met
CAT
[ENA]
¡û
>W1910584857
JYBL01000034
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
14742
14666
-
Met
CAT
[ENA]
¡û
>W1910584859
JYBL01000034
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
14547
14471
-
Met
CAT
[ENA]
¡û
>W1910914895
NHTT01000017
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
14716
14640
-
Met
CAT
[ENA]
¡û
>W1910914897
NHTT01000017
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
14521
14445
-
Met
CAT
[ENA]
¡û
>W1810606243
QGOK01000014
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
14231
14155
-
Met
CAT
[ENA]
¡û
>W1810676288
QKLW01000014
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
27969
28045
+
Met
CAT
[ENA]
¡û
>W1810676290
QKLW01000014
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
28169
28245
+
Met
CAT
[ENA]
¡û
>W1810679657
QKRA01000006
Gammaproteobacteria
Marinomonas piezotolerans YLB-05 [QKRA]
12849
12925
+
Met
CAT
[ENA]
¡û
>W1810679659
QKRA01000006
Gammaproteobacteria
Marinomonas piezotolerans YLB-05 [QKRA]
13031
13107
+
Met
CAT
[ENA]
¡û
>W1810720381
QNRF01000017
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
15022
14946
-
Met
CAT
[ENA]
¡û
>W1810720383
QNRF01000017
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
14840
14764
-
Met
CAT
[ENA]
¡û
>W1810721705
QNSE01000008
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
15126
15050
-
Met
CAT
[ENA]
¡û
>W1810721707
QNSE01000008
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
14938
14862
-
Met
CAT
[ENA]
¡û
>W1810759737
QPJQ01000047
Gammaproteobacteria
Marinomonas foliarum CECT 7731 [QPJQ]
13360
13436
+
Met
CAT
[ENA]
¡û
>W1810759739
QPJQ01000047
Gammaproteobacteria
Marinomonas foliarum CECT 7731 [QPJQ]
13553
13629
+
Met
CAT
[ENA]
¡û
>W1810779453
QQOH01000006
Gammaproteobacteria
Motiliproteus coralliicola C34 [QQOH]
160662
160738
+
Met
CAT
[ENA]
¡û
>W1810885357
QUNG01000007
Gammaproteobacteria
Marinomonas pollencensis CECT 7375 [QUNG]
180885
180809
-
Met
CAT
[ENA]
¡û
>W1810885359
QUNG01000007
Gammaproteobacteria
Marinomonas pollencensis CECT 7375 [QUNG]
180688
180612
-
Met
CAT
[ENA]
¡û
>ENV09003938
ADIF01000543
Marine metagenome apSum_C1
886
810
-
Met
CAT
[ENA]
¡û
>C11114670
CP002583
Gammaproteobacteria
Marinomonas mediterranea MMB-1 [CP002583]
3266060
3266136
+
Met
CAT
[Ensembl]
¡û
>C11114672
CP002583
Gammaproteobacteria
Marinomonas mediterranea MMB-1 [CP002583]
3266241
3266317
+
Met
CAT
[Ensembl]
¡û
>C11115055
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
768966
768890
-
Met
CAT
[Ensembl]
¡û
>C11115057
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
768785
768709
-
Met
CAT
[Ensembl]
¡û
>W1511518514
JXYC01000011
Gammaproteobacteria
Marinomonas sp. S3726 [JXYC]
88456
88380
-
Met
CAT
[ENA]
¡û
>W1511518516
JXYC01000011
Gammaproteobacteria
Marinomonas sp. S3726 [JXYC]
88268
88192
-
Met
CAT
[ENA]
¡û
>W1511576959
LAQF01000008
Gammaproteobacteria
Oceanospirillaceae bacterium ASP10-02a [LAQF]
24699
24623
-
Met
CAT
[ENA]
¡û
>W121068356
AJUL01000009
Gammaproteobacteria
Thiothrix nivea DSM 5205 [AJUL]
601488
601564
+
Met
CAT
[ENA]
¡û
>W1610503703
FLOB01000005
Gammaproteobacteria
Marinomonas spartinae [FLOB]
235401
235325
-
Met
CAT
[ENA]
¡û
>W1610503705
FLOB01000005
Gammaproteobacteria
Marinomonas spartinae [FLOB]
235227
235151
-
Met
CAT
[ENA]
¡û
>W1610503750
FLOC01000001
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
63974
64050
+
Met
CAT
[ENA]
¡û
>W1610503752
FLOC01000001
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
64159
64235
+
Met
CAT
[ENA]
¡û
>W1610503754
FLOC01000001
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
64345
64421
+
Met
CAT
[ENA]
¡û
>W1610503989
FLOE01000002
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
236657
236581
-
Met
CAT
[ENA]
¡û
>W1610503991
FLOE01000002
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
236483
236407
-
Met
CAT
[ENA]
¡û
>W1610506603
FLRA01000002
Gammaproteobacteria
Marinomonas gallaica CECT 5115 [FLRA]
65094
65170
+
Met
CAT
[ENA]
¡û
>W1610506605
FLRA01000002
Gammaproteobacteria
Marinomonas gallaica CECT 5115 [FLRA]
65278
65354
+
Met
CAT
[ENA]
¡û
>W1610506722
FLRB01000012
Gammaproteobacteria
Marinomonas gallaica CECT 5116 [FLRB]
65094
65170
+
Met
CAT
[ENA]
¡û
>W1610506724
FLRB01000012
Gammaproteobacteria
Marinomonas gallaica CECT 5116 [FLRB]
65278
65354
+
Met
CAT
[ENA]
¡û
>W1610540074
JSEE01000022
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
31340
31416
+
Met
CAT
[ENA]
¡û
>W1610540076
JSEE01000022
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
31522
31598
+
Met
CAT
[ENA]
¡û
>W1610540094
JSEN01000003
Gammaproteobacteria
Marinomonas sp. SBI22 [JSEN]
193670
193746
+
Met
CAT
[ENA]
¡û
>W1610540096
JSEN01000003
Gammaproteobacteria
Marinomonas sp. SBI22 [JSEN]
193858
193934
+
Met
CAT
[ENA]
¡û
>W1610540190
JSEO01000004
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
193864
193940
+
Met
CAT
[ENA]
¡û
>W1610540192
JSEO01000004
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
194052
194128
+
Met
CAT
[ENA]
¡û
>W1610924787
LTAV01000001
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
3
79
+
Met
CAT
[ENA]
¡û
>W1610924833
LTAV01000023
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
258
182
-
Met
CAT
[ENA]
¡û
>W1610924835
LTAV01000023
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
77
1
-
Met
CAT
[ENA]
¡û
>W1610924864
LTAV01000067
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
261
185
-
Met
CAT
[ENA]
¡û
>W1610924866
LTAV01000067
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
75
1
-
Met
CAT
[ENA]
¡û
>W1610924891
LTAW01000006
Gammaproteobacteria
Marinomonas atlantica [LTAW]
4
80
+
Met
CAT
[ENA]
¡û
>W1610924919
LTAW01000013
Gammaproteobacteria
Marinomonas atlantica [LTAW]
74
1
-
Met
CAT
[ENA]
¡û
>W1610924990
LTAX01000030
Gammaproteobacteria
Marinomonas gallaica [LTAX]
165
89
-
Met
CAT
[ENA]
¡û
>W1610925016
LTAX01000092
Gammaproteobacteria
Marinomonas gallaica [LTAX]
165
89
-
Met
CAT
[ENA]
¡û
>W1710496532
FLOB01000005
Gammaproteobacteria
Marinomonas spartinae [FLOB]
235401
235325
-
Met
CAT
[ENA]
¡û
>W1710496534
FLOB01000005
Gammaproteobacteria
Marinomonas spartinae [FLOB]
235227
235151
-
Met
CAT
[ENA]
¡û
>W1710496579
FLOC01000001
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
63974
64050
+
Met
CAT
[ENA]
¡û
>W1710496581
FLOC01000001
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
64159
64235
+
Met
CAT
[ENA]
¡û
>W1710496583
FLOC01000001
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
64345
64421
+
Met
CAT
[ENA]
¡û
>W1710583998
FQVF01000028
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
38471
38547
+
Met
CAT
[ENA]
¡û
>W1710584000
FQVF01000028
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
38666
38742
+
Met
CAT
[ENA]
¡û
>W1710643095
JSEE01000022
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
31340
31416
+
Met
CAT
[ENA]
¡û
>W1710643097
JSEE01000022
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
31522
31598
+
Met
CAT
[ENA]
¡û
>W1710643115
JSEN01000003
Gammaproteobacteria
Marinomonas sp. SBI22 [JSEN]
193670
193746
+
Met
CAT
[ENA]
¡û
>W1710643117
JSEN01000003
Gammaproteobacteria
Marinomonas sp. SBI22 [JSEN]
193858
193934
+
Met
CAT
[ENA]
¡û
>W1710643211
JSEO01000004
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
193864
193940
+
Met
CAT
[ENA]
¡û
>W1710643213
JSEO01000004
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
194052
194128
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK