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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.278003 (17 seq.)
>W131036284
ALVM01000010
Cyanobacteriota
Leptolyngbya boryana PCC 6306 [ALVM]
2122381
2122453
+
Met
CAT
[ENA]
¡û
>W1711666749
MRCG01000002
Cyanobacteriota
Phormidium tenue NIES-30 [MRCG]
265177
265252
+
Met
CAT
[ENA]
¡û
>W131036410
ALVP01000012
Cyanobacteriota
Nodosilinea nodulosa PCC 7104 [ALVP]
290645
290717
+
Met
CAT
[ENA]
¡û
>C021086
AP008231
Cyanobacteriota
Synechococcus elongatus PCC 6301 [AP008231]
1640108
1640180
+
Met
CAT
[Ensembl]
¡û
>C021149
CP000100
Cyanobacteriota
Synechococcus elongatus PCC 7942 = FACHB-805 [CP000100]
2676678
2676606
-
Met
CAT
[Ensembl]
¡û
>C171000049
AP014638
Cyanobacteriota
Leptolyngbya boryana IAM M-101 [AP014638]
3997897
3997825
-
Met
CAT
-
¡û
>C171000112
AP014642
Cyanobacteriota
Leptolyngbya boryana dg5 [AP014642]
3997897
3997825
-
Met
CAT
-
¡û
>WENV183748607
PPFU01059374
[PPFU] hypolithon metagenome; Antarctic Hypolithon
5323
5250
-
Ile2
CAT
[ENA]
¢þ
>C191099552
CP033061
Cyanobacteriota
Synechococcus elongatus UTEX 3055 [CP033061]
1170416
1170490
+
Met
CAT
-
¡û
>W09101135
AADZ01000004
Cyanobacteriota
Synechococcus elongatus PCC 7942 [AADZ]
16266
16192
-
Met
CAT
[ENA]
¡û
>W1910976643
NKFP01000004
Cyanobacteriota
Leptolyngbya ohadii IS1 [NKFP]
271956
272029
+
Met
CAT
[ENA]
¡û
>W1810400267
PYFY01000674
Cyanobacteriota
filamentous cyanobacterium CCP4 [PYFY]
1102
1174
+
Met
CAT
[ENA]
¡û
>W1810401293
PYGV01000160
Cyanobacteriota
filamentous cyanobacterium CCP3 [PYGV]
10519
10591
+
Met
CAT
[ENA]
¡û
>C151009146
CP006471
Cyanobacteriota
Synechococcus elongatus UTEX 2973 [CP006471]
587554
587628
+
Met
CAT
[Ensembl]
¡û
>C161002691
AP017308
Cyanobacteriota
Leptolyngbya sp. NIES-3755 [AP017308]
4242248
4242176
-
Met
CAT
[Ensembl]
¡û
>W1610057127
BBWW01000001
Cyanobacteriota
Leptolyngbya sp. NIES-2104 [BBWW]
2372081
2372009
-
Met
CAT
[ENA]
¡û
>W1710053826
BBWW01000001
Cyanobacteriota
Leptolyngbya sp. NIES-2104 [BBWW]
2372081
2372009
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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