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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.278005 (12 seq.)
>WENV170114105
CENF01148439
[CENF] marine metagenome genome assembly TARA_004_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4821
4746
-
Glu
TTC
[ENA]
¢þ
>WENV170265998
CERE01029354
[CERE] marine metagenome genome assembly TARA_070_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
162
87
-
Glu
TTC
[ENA]
¢þ
>WENV170433392
CEUS01172085
[CEUS] marine metagenome genome assembly TARA_125_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1453
1378
-
Glu
TTC
[ENA]
¢þ
>WENV170708554
LNAP01095387
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
667
592
-
Glu
CTC
[ENA]
¢þ
>C191166426
CP039459
Alphaproteobacteria
Acetobacteraceae bacterium 880 [CP039459]
602738
602813
+
Glu
TTC
-
¡û
>C191166427
CP039459
Alphaproteobacteria
Acetobacteraceae bacterium 880 [CP039459]
602883
602958
+
Glu
TTC
-
¡û
>C191166460
CP039459
Alphaproteobacteria
Acetobacteraceae bacterium 880 [CP039459]
971049
970974
-
Glu
CTC
-
¡û
>C191166484
CP039460
Alphaproteobacteria
Acetobacteraceae bacterium 868 [CP039460]
554403
554478
+
Glu
TTC
-
¡û
>C191166485
CP039460
Alphaproteobacteria
Acetobacteraceae bacterium 868 [CP039460]
554550
554625
+
Glu
TTC
-
¡û
>C191166523
CP039460
Alphaproteobacteria
Acetobacteraceae bacterium 868 [CP039460]
962761
962686
-
Glu
CTC
-
¡û
>C151040668
CP008941
Alphaproteobacteria
Candidatus Paracaedibacter acanthamoebae [CP008941]
705339
705414
+
Glu
CTC
[Ensembl]
¡û
>W11150865
AEWF01000001
Alphaproteobacteria
Candidatus Odyssella thessalonicensis thessalonicensis L13 [AEWF]
539098
539173
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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