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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.278112 (6 seq.)
>WENV170235069
CEQL01039876
[CEQL] marine metagenome genome assembly TARA_076_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
490
414
-
Arg
ACG
[ENA]
¢þ
>WENV170313676
CESN01043396
[CESN] marine metagenome genome assembly TARA_098_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
285
361
+
Arg
ACG
[ENA]
¢þ
>WENV170821835
MDSY01029276
[MDSY] marine metagenome; seawater
249
325
+
Arg
ACG
[ENA]
¢þ
>WENV170842089
MDSZ01233786
[MDSZ] marine metagenome; seawater
75
-1
-
Arg
ACG
[ENA]
¢þ
>WENV170870172
MDTB01187883
[MDTB] marine metagenome; seawater
13313
13389
+
Arg
ACG
[ENA]
¢þ
>WENV170941835
MDTG01367324
[MDTG] marine metagenome; seawater
447
371
-
Arg
ACG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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