This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.278259 (22 seq.)
>C171051160
CP016796
Gammaproteobacteria
Francisella uliginis TX07-7310 [CP016796]
1519769
1519844
+
Lys
TTT
-
¡û
>C08005120
CP000915
Gammaproteobacteria
Francisella tularensis subsp. mediasiatica FSC147 FSC147; GIEM 543 [CP000915]
1436995
1436923
-
Lys
TTT
[Ensembl]
¡û
>WENV183707147
PDWI01006969
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
7451
7526
+
Lys
TTT
[ENA]
¢þ
>WENV183709167
PDWI01024871
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
9876
9951
+
Lys
TTT
[ENA]
¢þ
>WENV183711615
PDWI01074831
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
967
892
-
Lys
TTT
[ENA]
¢þ
>WENV183714317
PDWI01177591
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
920
995
+
Lys
TTT
[ENA]
¢þ
>WENV183719328
PDWJ01012412
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
4729
4654
-
Lys
TTT
[ENA]
¢þ
>WENV183720603
PDWJ01039062
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1926
1851
-
Lys
TTT
[ENA]
¢þ
>WENV183721274
PDWJ01061978
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
85
10
-
Lys
TTT
[ENA]
¢þ
>WENV183721972
PDWJ01097710
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
349
274
-
Lys
TTT
[ENA]
¢þ
>WENV170834228
MDSZ01093963
[MDSZ] marine metagenome; seawater
55227
55152
-
Lys
TTT
[ENA]
¢þ
>WENV170834229
MDSZ01093963
[MDSZ] marine metagenome; seawater
54907
54832
-
Lys
TTT
[ENA]
¢þ
>C181054082
CP021781
Gammaproteobacteria
Francisella adeliensis FDC440 [CP021781]
1501560
1501485
-
Lys
TTT
-
¡û
>C181059152
CP022132
Gammaproteobacteria
Francisella halioticida DSM 23729 [CP022132]
1004311
1004236
-
Lys
TTT
-
¡û
>W1911687797
QLIS01000003
Gammaproteobacteria
Pseudofrancisella aestuarii SYSU WZ-2 [QLIS]
82841
82916
+
Lys
TTT
[ENA]
¡û
>W1911687798
QLIS01000003
Gammaproteobacteria
Pseudofrancisella aestuarii SYSU WZ-2 [QLIS]
82947
83022
+
Lys
TTT
[ENA]
¡û
>C151054388
CP009574
Gammaproteobacteria
Francisella sp. FSC1006 [CP009574]
1862309
1862384
+
Lys
TTT
[Ensembl]
¡û
>C11109299
CP002872
Gammaproteobacteria
Francisella salina TX07-7308 [CP002872]
1700724
1700649
-
Lys
TTT
[Ensembl]
¡û
>C11109300
CP002872
Gammaproteobacteria
Francisella salina TX07-7308 [CP002872]
1700611
1700536
-
Lys
TTT
[Ensembl]
¡û
>W1511349165
JRLB01000010
Gammaproteobacteria
Nitrincola sp. A-D6 [JRLB]
104744
104669
-
Lys
TTT
[ENA]
¡û
>C161042458
CP012505
Gammaproteobacteria
Francisella persica ATCC VR-331 FSC845 [CP012505]
737278
737203
-
Lys
TTT
-
¡û
>C161049720
CP013022
Gammaproteobacteria
Francisella persica ATCC VR-331 [CP013022]
1351200
1351125
-
Lys
TTT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK