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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.278328 (70 seq.)
>W1711049695
LRQY01000018
Actinomycetota
Prescottella equi [LRQY]
196580
196653
+
Thr
CGT
[ENA]
¡û
>W1711049780
LRQZ01000136
Actinomycetota
Prescottella equi [LRQZ]
10406
10481
+
Thr
CGT
[ENA]
¡û
>W1711050053
LRRF01000246
Actinomycetota
Prescottella equi [LRRF]
12044
12117
+
Thr
CGT
[ENA]
¡û
>W1711050356
LRRL01000073
Actinomycetota
Rhodococcus ruber [LRRL]
74053
74128
+
Thr
CGT
[ENA]
¡û
>W1711069485
LSFR01000001
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
1663157
1663232
+
Thr
CGT
[ENA]
¡û
>W1711080705
LSRG01000011
Actinomycetota
Tsukamurella tyrosinosolvens [LSRG]
843143
843218
+
Thr
CGT
[ENA]
¡û
>W1711080782
LSRH01000021
Actinomycetota
Tsukamurella pulmonis [LSRH]
869498
869573
+
Thr
CGT
[ENA]
¡û
>W1711080839
LSRI01000025
Actinomycetota
Tsukamurella pulmonis [LSRI]
116431
116506
+
Thr
CGT
[ENA]
¡û
>W1711171897
LWBN01000026
Actinomycetota
Prescottella equi [LWBN]
183856
183931
+
Thr
CGT
[ENA]
¡û
>W1711179613
LWHT01000007
Actinomycetota
Prescottella equi [LWHT]
316801
316874
+
Thr
CGT
[ENA]
¡û
>W1711179668
LWHU01000011
Actinomycetota
Prescottella equi [LWHU]
182560
182635
+
Thr
CGT
[ENA]
¡û
>W1711179764
LWHW01000006
Actinomycetota
Prescottella equi [LWHW]
332815
332888
+
Thr
CGT
[ENA]
¡û
>W1711179824
LWHX01000018
Actinomycetota
Prescottella equi [LWHX]
29617
29692
+
Thr
CGT
[ENA]
¡û
>W1711179880
LWHY01000018
Actinomycetota
Prescottella equi [LWHY]
29617
29692
+
Thr
CGT
[ENA]
¡û
>W1711179918
LWHZ01000007
Actinomycetota
Prescottella equi [LWHZ]
314674
314747
+
Thr
CGT
[ENA]
¡û
>W1711179978
LWIA01000005
Actinomycetota
Prescottella equi [LWIA]
332816
332889
+
Thr
CGT
[ENA]
¡û
>W1711180027
LWIB01000012
Actinomycetota
Prescottella equi [LWIB]
182561
182636
+
Thr
CGT
[ENA]
¡û
>W1711180088
LWIC01000017
Actinomycetota
Prescottella equi [LWIC]
29617
29692
+
Thr
CGT
[ENA]
¡û
>W1711192231
LWTO01000012
Actinomycetota
Prescottella equi [LWTO]
172560
172635
+
Thr
CGT
[ENA]
¡û
>W1711192287
LWTP01000008
Actinomycetota
Prescottella equi [LWTP]
322106
322179
+
Thr
CGT
[ENA]
¡û
>W1711192352
LWTR01000003
Actinomycetota
Prescottella equi [LWTR]
778
705
-
Thr
CGT
[ENA]
¡û
>W1711192491
LWTT01000012
Actinomycetota
Prescottella equi [LWTT]
798
723
-
Thr
CGT
[ENA]
¡û
>W1711192532
LWTU01000009
Actinomycetota
Prescottella equi [LWTU]
890
815
-
Thr
CGT
[ENA]
¡û
>W1711192652
LWTW01000112
Actinomycetota
Prescottella equi [LWTW]
132334
132407
+
Thr
CGT
[ENA]
¡û
>W1711192704
LWTX01000019
Actinomycetota
Prescottella equi [LWTX]
735
660
-
Thr
CGT
[ENA]
¡û
>W1711192750
LWTY01000009
Actinomycetota
Prescottella equi [LWTY]
182409
182484
+
Thr
CGT
[ENA]
¡û
>W1711207221
LXFG01000017
Actinomycetota
Prescottella equi [LXFG]
30065
30140
+
Thr
CGT
[ENA]
¡û
>W1711207271
LXFH01000012
Actinomycetota
Prescottella equi [LXFH]
185408
185483
+
Thr
CGT
[ENA]
¡û
>W1711207327
LXFI01000014
Actinomycetota
Prescottella equi [LXFI]
968
893
-
Thr
CGT
[ENA]
¡û
>W1711466038
MJLT01000012
Actinomycetota
Arthrobacter sp. SW1 [MJLT]
359989
359916
-
Thr
CGT
[ENA]
¡û
>W1711539233
MLYX02000001
Actinomycetota
Rhodococcus sp. M8 [MLYX]
2399088
2399161
+
Thr
CGT
[ENA]
¡û
>C171039228
CP015529
Actinomycetota
Rhodococcus sp. WB1 [CP015529]
4810102
4810029
-
Thr
CGT
-
¡û
>W131059081
ANGC01000023
Actinomycetota
Rhodococcus ruber Chol-4 [ANGC]
71154
71229
+
Thr
CGT
[ENA]
¡û
>W131251258
CAVJ010000152
Actinomycetota
Rhodococcus aetherivorans EsD8 [CAVJ]
4636
4711
+
Thr
CGT
[ENA]
¡û
>W141063591
APJC01000008
Actinomycetota
Prescottella equi NBRC 101255 = C 7 [APJC]
185960
186035
+
Thr
CGT
[ENA]
¡û
>W141092569
AVAE01000026
Actinomycetota
Rhodococcus aetherivorans BCP1 [AVAE]
11092
11165
+
Thr
CGT
[ENA]
¡û
>WENV183746665
POYE01061956
[POYE] biofilm metagenome; steel pipe from biofilm reactor
83
9
-
Thr
CGT
[ENA]
¢þ
>C181035825
CP019066
Actinomycetota
Tsukamurella tyrosinosolvens MH1 [CP019066]
4497021
4497095
+
Thr
CGT
-
¡û
>C181099297
CP024315
Actinomycetota
Rhodococcus ruber P14 [CP024315]
4160837
4160911
+
Thr
CGT
-
¡û
>C181107737
CP024890
Actinomycetota
Rhodococcus ruber YYL [CP024890]
5587347
5587421
+
Thr
CGT
-
¡û
>C181160011
CP027793
Actinomycetota
Prescottella equi DSSKP-R-001 [CP027793]
638404
638478
+
Thr
CGT
-
¡û
>C181175124
CP029146
Actinomycetota
Rhodococcus ruber SD3 [CP029146]
553204
553278
+
Thr
CGT
-
¡û
>C191139059
CP035319
Actinomycetota
Rhodococcus sp. ABRD24 [CP035319]
3274134
3274207
+
Thr
CGT
-
¡û
>W1910584621
JXXO01000183
Actinomycetota
Rhodococcus ruber OA1 [JXXO]
705
631
-
Thr
CGT
[ENA]
¡û
>W1911717753
QQQF01000249
Actinomycetota
Tsukamurella pulmonis PW1004 [QQQF]
124994
125067
+
Thr
CGT
[ENA]
¡û
>W1810050262
PCZU01000258
Actinomycetota
Rhodococcus sp. ENV425 [PCZU]
637
564
-
Thr
CGT
[ENA]
¡û
>W1810477551
QAOW01000014
Actinomycetota
Rhodococcus sp. OK519 [QAOW]
974
900
-
Thr
CGT
[ENA]
¡û
>W1810762980
QQAT01000007
Actinomycetota
Rhodococcus sp. AG1013 [QQAT]
926
852
-
Thr
CGT
[ENA]
¡û
>C151080795
CP011341
Actinomycetota
Rhodococcus aetherivorans IcdP1 [CP011341]
715419
715492
+
Thr
CGT
[Ensembl]
¡û
>W1510001817
AZYO01000106
Actinomycetota
Rhodococcus rhodochrous KG-21 [AZYO]
16425
16500
+
Thr
CGT
[ENA]
¡û
>W1510053313
CCSD01000086
Actinomycetota
Rhodococcus ruber [CCSD]
33922
33997
+
Thr
CGT
[ENA]
¡û
>W1511640471
LDUF01000023
Actinomycetota
Rhodococcus ruber P25 [LDUF]
625
550
-
Thr
CGT
[ENA]
¡û
>C121015972
FN563149
Actinomycetota
Prescottella equi 103S [FN563149]
574193
574268
+
Thr
CGT
[Ensembl]
¡û
>W1610082636
BDGK01000001
Actinomycetota
Rhodococcus sp. Br-6 [BDGK]
383370
383445
+
Thr
CGT
[ENA]
¡û
>W121060057
AJFC01000239
Actinomycetota
Rhodococcus sp. P14 [AJFC]
5956
6031
+
Thr
CGT
[ENA]
¡û
>W1610187945
FBUK01000101
Actinomycetota
Rhodococcus rhodochrous [FBUK]
759
684
-
Thr
CGT
[ENA]
¡û
>W1610890824
LRQY01000018
Actinomycetota
Prescottella equi [LRQY]
196580
196653
+
Thr
CGT
[ENA]
¡û
>W1610890909
LRQZ01000136
Actinomycetota
Prescottella equi [LRQZ]
10406
10481
+
Thr
CGT
[ENA]
¡û
>W1610891182
LRRF01000246
Actinomycetota
Prescottella equi [LRRF]
12044
12117
+
Thr
CGT
[ENA]
¡û
>W1610891485
LRRL01000073
Actinomycetota
Rhodococcus ruber [LRRL]
74053
74128
+
Thr
CGT
[ENA]
¡û
>W1610910013
LSFR01000001
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
1663157
1663232
+
Thr
CGT
[ENA]
¡û
>W1610919572
LSRG01000011
Actinomycetota
Tsukamurella tyrosinosolvens [LSRG]
843143
843218
+
Thr
CGT
[ENA]
¡û
>W1610919649
LSRH01000021
Actinomycetota
Tsukamurella pulmonis [LSRH]
869498
869573
+
Thr
CGT
[ENA]
¡û
>W1610919706
LSRI01000025
Actinomycetota
Tsukamurella pulmonis [LSRI]
116431
116506
+
Thr
CGT
[ENA]
¡û
>W1710072206
BCXE01000036
Actinomycetota
Rhodococcus ruber NBRC 15591 [BCXE]
967
892
-
Thr
CGT
[ENA]
¡û
>W1710081810
BDGK01000001
Actinomycetota
Rhodococcus sp. Br-6 [BDGK]
383370
383445
+
Thr
CGT
[ENA]
¡û
>W1710083026
BDIV01000007
Actinomycetota
Rhodococcus sp. Br-6 [BDIV]
383387
383462
+
Thr
CGT
[ENA]
¡û
>W1710189561
FBUK01000101
Actinomycetota
Rhodococcus rhodochrous [FBUK]
759
684
-
Thr
CGT
[ENA]
¡û
>W1710527740
FNLF01000002
Actinomycetota
Tsukamurella pulmonis [FNLF]
651648
651573
-
Thr
CGT
[ENA]
¡û
>W1710622287
JNVR01000252
Actinomycetota
Rhodococcus rhodochrous [JNVR]
7576
7649
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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