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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.278411 (45 seq.)
>W1711185542
LWNM01000084
Bacillota
Lactobacillus sp. HMSC24D01 [LWNM]
40095
40021
-
Lys
CTT
[ENA]
¡û
>W1711185543
LWNM01000084
Bacillota
Lactobacillus sp. HMSC24D01 [LWNM]
39865
39791
-
Lys
CTT
[ENA]
¡û
>W1712106896
NIWV01000004
Bacillota
Limosilactobacillus fermentum [NIWV]
42751
42825
+
Lys
CTT
[ENA]
¡û
>W1712106897
NIWV01000004
Bacillota
Limosilactobacillus fermentum [NIWV]
42981
43055
+
Lys
CTT
[ENA]
¡û
>C171057918
CP017151
Bacillota
Limosilactobacillus fermentum NCC2970 [CP017151]
937122
937048
-
Lys
CTT
-
¡û
>C171057919
CP017151
Bacillota
Limosilactobacillus fermentum NCC2970 [CP017151]
935770
935696
-
Lys
CTT
-
¡û
>W141094645
AVCT01000174
Bacillota
Limosilactobacillus fermentum 3872 [AVCT]
717
643
-
Lys
CTT
[ENA]
¡û
>W141094646
AVCT01000174
Bacillota
Limosilactobacillus fermentum 3872 [AVCT]
487
413
-
Lys
CTT
[ENA]
¡û
>W141148170
AWXS01000001
Bacillota
Limosilactobacillus fermentum Lf1 [AWXS]
16164
16090
-
Lys
CTT
[ENA]
¡û
>WENV181555767
OGIU01000168
[OGIU] metagenome; Human gut stool
281
207
-
Lys
CTT
[ENA]
¢þ
>WENV182954472
OKWA01001820
[OKWA] human gut metagenome; human gut
6176
6250
+
Lys
CTT
[ENA]
¢þ
>WENV182954473
OKWA01001820
[OKWA] human gut metagenome; human gut
6406
6480
+
Lys
CTT
[ENA]
¢þ
>WENV183217652
OLQI01001164
[OLQI] human gut metagenome; faeces
395
321
-
Lys
CTT
[ENA]
¢þ
>WENV183217653
OLQI01001164
[OLQI] human gut metagenome; faeces
165
91
-
Lys
CTT
[ENA]
¢þ
>WENV183307256
OLTD01007496
[OLTD] human gut metagenome; faeces
626
700
+
Lys
CTT
[ENA]
¢þ
>C181004061
AP017973
Bacillota
Limosilactobacillus fermentum MTCC 25067 [AP017973]
17456
17382
-
Lys
CTT
-
¡û
>C181004062
AP017973
Bacillota
Limosilactobacillus fermentum MTCC 25067 [AP017973]
17227
17153
-
Lys
CTT
-
¡û
>W1910374052
FUHY01000034
Bacillota
Limosilactobacillus fermentum S13 [FUHY]
91231
91305
+
Lys
CTT
[ENA]
¡û
>W1910374053
FUHY01000034
Bacillota
Limosilactobacillus fermentum S13 [FUHY]
91456
91530
+
Lys
CTT
[ENA]
¡û
>W1910954284
NJPQ01000003
Bacillota
Limosilactobacillus fermentum SHI-2 [NJPQ]
15694
15768
+
Lys
CTT
[ENA]
¡û
>W1910954285
NJPQ01000003
Bacillota
Limosilactobacillus fermentum SHI-2 [NJPQ]
15919
15993
+
Lys
CTT
[ENA]
¡û
>W1810489141
QAZV01000002
Bacillota
Limosilactobacillus fermentum DS19_7 [QAZV]
66964
67038
+
Lys
CTT
[ENA]
¡û
>W1810489142
QAZV01000002
Bacillota
Limosilactobacillus fermentum DS19_7 [QAZV]
67189
67263
+
Lys
CTT
[ENA]
¡û
>C161077683
CP014787
Bacillota
Limosilactobacillus oris J-1 [CP014787]
1889575
1889649
+
Lys
CTT
-
¡û
>C161077684
CP014787
Bacillota
Limosilactobacillus oris J-1 [CP014787]
1889805
1889879
+
Lys
CTT
-
¡û
>W1610032182
AYZK01000003
Bacillota
Lacticaseibacillus thailandensis DSM 22698 = JCM 13996 [AYZK]
124585
124661
+
Lys
CTT
[ENA]
¡û
>W1610032183
AYZK01000003
Bacillota
Lacticaseibacillus thailandensis DSM 22698 = JCM 13996 [AYZK]
138208
138284
+
Lys
CTT
[ENA]
¡û
>W1610036766
AZFN01000007
Bacillota
Limosilactobacillus gastricus DSM 16045 [AZFN]
53774
53846
+
Lys
CTT
[ENA]
¡û
>W1610043844
BBAC01000004
Bacillota
Lacticaseibacillus sharpeae JCM 1186 = DSM 20505 [BBAC]
91
165
+
Lys
CTT
[ENA]
¡û
>W1610043875
BBAC01000017
Bacillota
Lacticaseibacillus sharpeae JCM 1186 = DSM 20505 [BBAC]
49882
49958
+
Lys
CTT
[ENA]
¡û
>W1610049096
BBER01000003
Bacillota
Lacticaseibacillus thailandensis DSM 22698 = JCM 13996 [BBER]
124334
124410
+
Lys
CTT
[ENA]
¡û
>W1610049097
BBER01000003
Bacillota
Lacticaseibacillus thailandensis DSM 22698 = JCM 13996 [BBER]
137961
138037
+
Lys
CTT
[ENA]
¡û
>W1610061807
BCMX01000004
Bacillota
Limosilactobacillus equigenerosi [BCMX]
26461
26537
+
Lys
CTT
[ENA]
¡û
>W1610061808
BCMX01000005
Bacillota
Limosilactobacillus equigenerosi [BCMX]
71
147
+
Lys
CTT
[ENA]
¡û
>W1710028058
AYYO01000017
Bacillota
Lacticaseibacillus sharpeae JCM 1186 = DSM 20505 [AYYO]
49820
49896
+
Lys
CTT
[ENA]
¡û
>W1710028092
AYYO01000055
Bacillota
Lacticaseibacillus sharpeae JCM 1186 = DSM 20505 [AYYO]
178244
178170
-
Lys
CTT
[ENA]
¡û
>W1710029109
AYZK01000003
Bacillota
Lacticaseibacillus thailandensis DSM 22698 = JCM 13996 [AYZK]
124585
124661
+
Lys
CTT
[ENA]
¡û
>W1710029110
AYZK01000003
Bacillota
Lacticaseibacillus thailandensis DSM 22698 = JCM 13996 [AYZK]
138208
138284
+
Lys
CTT
[ENA]
¡û
>W1710033805
AZFN01000007
Bacillota
Limosilactobacillus gastricus DSM 16045 [AZFN]
53774
53846
+
Lys
CTT
[ENA]
¡û
>W1710041004
BBAC01000004
Bacillota
Lacticaseibacillus sharpeae JCM 1186 = DSM 20505 [BBAC]
91
165
+
Lys
CTT
[ENA]
¡û
>W1710041035
BBAC01000017
Bacillota
Lacticaseibacillus sharpeae JCM 1186 = DSM 20505 [BBAC]
49882
49958
+
Lys
CTT
[ENA]
¡û
>W1710045568
BBER01000003
Bacillota
Lacticaseibacillus thailandensis DSM 22698 = JCM 13996 [BBER]
124334
124410
+
Lys
CTT
[ENA]
¡û
>W1710045569
BBER01000003
Bacillota
Lacticaseibacillus thailandensis DSM 22698 = JCM 13996 [BBER]
137961
138037
+
Lys
CTT
[ENA]
¡û
>W1710059472
BCMX01000004
Bacillota
Limosilactobacillus equigenerosi [BCMX]
26461
26537
+
Lys
CTT
[ENA]
¡û
>W1710059473
BCMX01000005
Bacillota
Limosilactobacillus equigenerosi [BCMX]
71
147
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK