This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.278579 (92 seq.)
>W1711176792
LWFP01001434
Gammaproteobacteria
Oleibacter sp. HI0075 HI0075 [LWFP]
108
184
+
Asp
GTC
[ENA]
¡û
>W1711176796
LWFP01001507
Gammaproteobacteria
Oleibacter sp. HI0075 HI0075 [LWFP]
429
505
+
Asp
GTC
[ENA]
¡û
>W1711176798
LWFP01001507
Gammaproteobacteria
Oleibacter sp. HI0075 HI0075 [LWFP]
755
831
+
Asp
GTC
[ENA]
¡û
>W1711176827
LWFP01002097
Gammaproteobacteria
Oleibacter sp. HI0075 HI0075 [LWFP]
33804
33728
-
Asp
GTC
[ENA]
¡û
>W1711176829
LWFP01002097
Gammaproteobacteria
Oleibacter sp. HI0075 HI0075 [LWFP]
33478
33402
-
Asp
GTC
[ENA]
¡û
>W1711176831
LWFP01002097
Gammaproteobacteria
Oleibacter sp. HI0075 HI0075 [LWFP]
33107
33031
-
Asp
GTC
[ENA]
¡û
>W1711177523
LWGC01000001
Gammaproteobacteria
Thalassolituus sp. HI0120 [LWGC]
77896
77820
-
Asp
GTC
[ENA]
¡û
>W1711177525
LWGC01000001
Gammaproteobacteria
Thalassolituus sp. HI0120 [LWGC]
77659
77583
-
Asp
GTC
[ENA]
¡û
>W1711177527
LWGC01000001
Gammaproteobacteria
Thalassolituus sp. HI0120 [LWGC]
77447
77371
-
Asp
GTC
[ENA]
¡û
>W1711177549
LWGC01001109
Gammaproteobacteria
Thalassolituus sp. HI0120 [LWGC]
390
314
-
Asp
GTC
[ENA]
¡û
>C171068001
CP017810
Gammaproteobacteria
Thalassolituus oleivorans K188 [CP017810]
2702074
2702150
+
Asp
GTC
-
¡û
>C171068003
CP017810
Gammaproteobacteria
Thalassolituus oleivorans K188 [CP017810]
2702283
2702359
+
Asp
GTC
-
¡û
>C171068005
CP017810
Gammaproteobacteria
Thalassolituus oleivorans K188 [CP017810]
2702648
2702724
+
Asp
GTC
-
¡û
>W131229462
AUGV01000002
Gammaproteobacteria
Oceanobacter kriegii DSM 6294 [AUGV]
2
78
+
Asp
GTC
[ENA]
¡û
>WENV180293975
OBIY01007231
[OBIY] beach sand metagenome; beach sand
407
331
-
Asp
GTC
[ENA]
¢þ
>WENV180294026
OBIY01010464
[OBIY] beach sand metagenome; beach sand
6
82
+
Asp
GTC
[ENA]
¢þ
>WENV180294231
OBIY01044675
[OBIY] beach sand metagenome; beach sand
445
369
-
Asp
GTC
[ENA]
¢þ
>WENV182542070
OJAV01001576
[OJAV] seawater metagenome; Sea water
920
844
-
Asp
GTC
[ENA]
¢þ
>WENV182547201
OJBR01011425
[OJBR] seawater metagenome; Sea water
352
428
+
Asp
GTC
[ENA]
¢þ
>WENV182551702
OJCG01002938
[OJCG] seawater metagenome; Sea water
386
310
-
Asp
GTC
[ENA]
¢þ
>WENV182551704
OJCG01002938
[OJCG] seawater metagenome; Sea water
177
101
-
Asp
GTC
[ENA]
¢þ
>WENV182555275
OJCZ01000176
[OJCZ] seawater metagenome; Sea water
4487
4563
+
Asp
GTC
[ENA]
¢þ
>WENV182555277
OJCZ01000176
[OJCZ] seawater metagenome; Sea water
4734
4810
+
Asp
GTC
[ENA]
¢þ
>WENV183704212
PDWI01000089
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
95575
95651
+
Asp
GTC
[ENA]
¢þ
>WENV183704214
PDWI01000089
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
95896
95972
+
Asp
GTC
[ENA]
¢þ
>WENV183704236
PDWI01000109
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
86288
86212
-
Asp
GTC
[ENA]
¢þ
>WENV183704238
PDWI01000109
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
85893
85817
-
Asp
GTC
[ENA]
¢þ
>WENV183716634
PDWJ01000091
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
88264
88340
+
Asp
GTC
[ENA]
¢þ
>WENV183716636
PDWJ01000091
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
88585
88661
+
Asp
GTC
[ENA]
¢þ
>WENV183716907
PDWJ01000257
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
83198
83122
-
Asp
GTC
[ENA]
¢þ
>WENV183716909
PDWJ01000257
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
82803
82727
-
Asp
GTC
[ENA]
¢þ
>WENV170308094
CESL01000583
[CESL] marine metagenome genome assembly TARA_102_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
299
223
-
Asp
GTC
[ENA]
¢þ
>WENV170564909
CZQC01000036
[CZQC] hydrothermal vent metagenome; ocean water
171788
171712
-
Asp
GTC
[ENA]
¢þ
>WENV170564911
CZQC01000036
[CZQC] hydrothermal vent metagenome; ocean water
171579
171503
-
Asp
GTC
[ENA]
¢þ
>WENV170564913
CZQC01000036
[CZQC] hydrothermal vent metagenome; ocean water
171214
171138
-
Asp
GTC
[ENA]
¢þ
>WENV170571674
FLOH01000255
[FLOH] marine metagenome; water
129250
129326
+
Asp
GTC
[ENA]
¢þ
>WENV170594042
FUFK011147702
[FUFK] metagenome; unknown
141
217
+
Asp
GTC
[ENA]
¢þ
>WENV170786586
MDSV01005583
[MDSV] marine metagenome; seawater
3198
3122
-
Asp
GTC
[ENA]
¢þ
>WENV170819380
MDSX01091358
[MDSX] marine metagenome; seawater
11975
12051
+
Asp
GTC
[ENA]
¢þ
>WENV170819382
MDSX01091358
[MDSX] marine metagenome; seawater
12306
12382
+
Asp
GTC
[ENA]
¢þ
>WENV170819384
MDSX01091358
[MDSX] marine metagenome; seawater
12677
12753
+
Asp
GTC
[ENA]
¢þ
>WENV170824733
MDSY01081201
[MDSY] marine metagenome; seawater
121
197
+
Asp
GTC
[ENA]
¢þ
>WENV170832237
MDSZ01058076
[MDSZ] marine metagenome; seawater
81
5
-
Asp
GTC
[ENA]
¢þ
>WENV170835877
MDSZ01121420
[MDSZ] marine metagenome; seawater
8358
8434
+
Asp
GTC
[ENA]
¢þ
>WENV170842138
MDSZ01234920
[MDSZ] marine metagenome; seawater
38163
38087
-
Asp
GTC
[ENA]
¢þ
>WENV170844117
MDSZ01272415
[MDSZ] marine metagenome; seawater
1
77
+
Asp
GTC
[ENA]
¢þ
>WENV170867829
MDTB01152201
[MDTB] marine metagenome; seawater
19704
19780
+
Asp
GTC
[ENA]
¢þ
>WENV170877995
MDTC01068440
[MDTC] marine metagenome; seawater
37639
37563
-
Asp
GTC
[ENA]
¢þ
>WENV170877997
MDTC01068440
[MDTC] marine metagenome; seawater
37205
37129
-
Asp
GTC
[ENA]
¢þ
>WENV170910940
MDTE01098695
[MDTE] marine metagenome; seawater
407
331
-
Asp
GTC
[ENA]
¢þ
>WENV170910942
MDTE01098695
[MDTE] marine metagenome; seawater
81
5
-
Asp
GTC
[ENA]
¢þ
>WENV170918258
MDTE01203866
[MDTE] marine metagenome; seawater
11
87
+
Asp
GTC
[ENA]
¢þ
>WENV170918260
MDTE01203866
[MDTE] marine metagenome; seawater
366
442
+
Asp
GTC
[ENA]
¢þ
>WENV170922860
MDTG01039203
[MDTG] marine metagenome; seawater
11
87
+
Asp
GTC
[ENA]
¢þ
>WENV170922862
MDTG01039203
[MDTG] marine metagenome; seawater
377
453
+
Asp
GTC
[ENA]
¢þ
>WENV170922864
MDTG01039203
[MDTG] marine metagenome; seawater
714
790
+
Asp
GTC
[ENA]
¢þ
>WENV170942750
MDTG01383736
[MDTG] marine metagenome; seawater
8546
8622
+
Asp
GTC
[ENA]
¢þ
>WENV170942752
MDTG01383736
[MDTG] marine metagenome; seawater
8881
8955
+
Asp
GTC
[ENA]
¢þ
>C181067790
CP022530
Gammaproteobacteria
Bacterioplanes sanyensis NV9 [CP022530]
3954985
3955061
+
Asp
GTC
-
¡û
>C181067792
CP022530
Gammaproteobacteria
Bacterioplanes sanyensis NV9 [CP022530]
3955276
3955352
+
Asp
GTC
-
¡û
>C181067794
CP022530
Gammaproteobacteria
Bacterioplanes sanyensis NV9 [CP022530]
3955576
3955652
+
Asp
GTC
-
¡û
>C151013096
CP006829
Gammaproteobacteria
Thalassolituus oleivorans R6-15 [CP006829]
2507581
2507657
+
Asp
GTC
[Ensembl]
¡û
>C151013098
CP006829
Gammaproteobacteria
Thalassolituus oleivorans R6-15 [CP006829]
2507790
2507866
+
Asp
GTC
[Ensembl]
¡û
>C151013100
CP006829
Gammaproteobacteria
Thalassolituus oleivorans R6-15 [CP006829]
2508156
2508232
+
Asp
GTC
[Ensembl]
¡û
>C131021026
HF680312
Gammaproteobacteria
Thalassolituus oleivorans MIL-1 [HF680312]
1225041
1224965
-
Asp
GTC
[Ensembl]
¡û
>C131021028
HF680312
Gammaproteobacteria
Thalassolituus oleivorans MIL-1 [HF680312]
1224832
1224756
-
Asp
GTC
[Ensembl]
¡û
>C131021030
HF680312
Gammaproteobacteria
Thalassolituus oleivorans MIL-1 [HF680312]
1224467
1224391
-
Asp
GTC
[Ensembl]
¡û
>W1610610046
LFYV01000010
Gammaproteobacteria
Marinagarivorans algicola [LFYV]
51360
51284
-
Asp
GTC
[ENA]
¡û
>W1610610048
LFYV01000010
Gammaproteobacteria
Marinagarivorans algicola [LFYV]
51021
50945
-
Asp
GTC
[ENA]
¡û
>W1610610058
LFYV01000021
Gammaproteobacteria
Marinagarivorans algicola [LFYV]
66285
66361
+
Asp
GTC
[ENA]
¡û
>W1610610315
LGAK01000003
Gammaproteobacteria
Marinagarivorans algicola [LGAK]
98501
98577
+
Asp
GTC
[ENA]
¡û
>W1610610325
LGAK01000009
Gammaproteobacteria
Marinagarivorans algicola [LGAK]
117465
117541
+
Asp
GTC
[ENA]
¡û
>W1610610327
LGAK01000009
Gammaproteobacteria
Marinagarivorans algicola [LGAK]
117803
117879
+
Asp
GTC
[ENA]
¡û
>W1610985105
LWFP01001434
Gammaproteobacteria
Oleibacter sp. HI0075 HI0075 [LWFP]
108
184
+
Asp
GTC
[ENA]
¡û
>W1610985109
LWFP01001507
Gammaproteobacteria
Oleibacter sp. HI0075 HI0075 [LWFP]
429
505
+
Asp
GTC
[ENA]
¡û
>W1610985111
LWFP01001507
Gammaproteobacteria
Oleibacter sp. HI0075 HI0075 [LWFP]
755
831
+
Asp
GTC
[ENA]
¡û
>W1610985140
LWFP01002097
Gammaproteobacteria
Oleibacter sp. HI0075 HI0075 [LWFP]
33804
33728
-
Asp
GTC
[ENA]
¡û
>W1610985142
LWFP01002097
Gammaproteobacteria
Oleibacter sp. HI0075 HI0075 [LWFP]
33478
33402
-
Asp
GTC
[ENA]
¡û
>W1610985144
LWFP01002097
Gammaproteobacteria
Oleibacter sp. HI0075 HI0075 [LWFP]
33107
33031
-
Asp
GTC
[ENA]
¡û
>W1610985836
LWGC01000001
Gammaproteobacteria
Thalassolituus sp. HI0120 [LWGC]
77896
77820
-
Asp
GTC
[ENA]
¡û
>W1610985838
LWGC01000001
Gammaproteobacteria
Thalassolituus sp. HI0120 [LWGC]
77659
77583
-
Asp
GTC
[ENA]
¡û
>W1610985840
LWGC01000001
Gammaproteobacteria
Thalassolituus sp. HI0120 [LWGC]
77447
77371
-
Asp
GTC
[ENA]
¡û
>W1610985862
LWGC01001109
Gammaproteobacteria
Thalassolituus sp. HI0120 [LWGC]
390
314
-
Asp
GTC
[ENA]
¡û
>W1710598851
FTOH01000001
Gammaproteobacteria
Thalassolituus maritimus marinus [FTOH]
560099
560023
-
Asp
GTC
[ENA]
¡û
>W1710598853
FTOH01000001
Gammaproteobacteria
Thalassolituus maritimus marinus [FTOH]
559768
559692
-
Asp
GTC
[ENA]
¡û
>W1710598855
FTOH01000001
Gammaproteobacteria
Thalassolituus maritimus marinus [FTOH]
559226
559150
-
Asp
GTC
[ENA]
¡û
>W1710731391
LFYV01000010
Gammaproteobacteria
Marinagarivorans algicola [LFYV]
51360
51284
-
Asp
GTC
[ENA]
¡û
>W1710731393
LFYV01000010
Gammaproteobacteria
Marinagarivorans algicola [LFYV]
51021
50945
-
Asp
GTC
[ENA]
¡û
>W1710731403
LFYV01000021
Gammaproteobacteria
Marinagarivorans algicola [LFYV]
66285
66361
+
Asp
GTC
[ENA]
¡û
>W1710731821
LGAK01000003
Gammaproteobacteria
Marinagarivorans algicola [LGAK]
98501
98577
+
Asp
GTC
[ENA]
¡û
>W1710731831
LGAK01000009
Gammaproteobacteria
Marinagarivorans algicola [LGAK]
117465
117541
+
Asp
GTC
[ENA]
¡û
>W1710731833
LGAK01000009
Gammaproteobacteria
Marinagarivorans algicola [LGAK]
117803
117879
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK