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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.27873 (55 seq.)
>W1711269279
LZDS01000026
Gammaproteobacteria
Acinetobacter gandensis [LZDS]
152319
152230
-
Ser
TGA
[ENA]
¡û
>W1711269280
LZDS01000026
Gammaproteobacteria
Acinetobacter gandensis [LZDS]
151941
151852
-
Ser
TGA
[ENA]
¡û
>W1711269291
LZDS01000027
Gammaproteobacteria
Acinetobacter gandensis [LZDS]
82198
82109
-
Ser
TGA
[ENA]
¡û
>W1711314136
MAUF01000023
Gammaproteobacteria
Acinetobacter defluvii WCHA30 [MAUF]
21812
21901
+
Ser
TGA
[ENA]
¡û
>W1711314139
MAUF01000023
Gammaproteobacteria
Acinetobacter defluvii WCHA30 [MAUF]
23380
23291
-
Ser
TGA
[ENA]
¡û
>W1711333390
MBPQ02000009
Gammaproteobacteria
Acinetobacter sp. WCHAc010034 WCHA34 [MBPQ]
80311
80222
-
Ser
TGA
[ENA]
¡û
>W1711333400
MBPQ02000019
Gammaproteobacteria
Acinetobacter sp. WCHAc010034 WCHA34 [MBPQ]
53405
53494
+
Ser
TGA
[ENA]
¡û
>W1711333478
MBPR02000038
Gammaproteobacteria
Acinetobacter wuhouensis WCHA60 [MBPR]
4424
4335
-
Ser
TGA
[ENA]
¡û
>W1711333479
MBPR02000040
Gammaproteobacteria
Acinetobacter wuhouensis WCHA60 [MBPR]
6321
6232
-
Ser
TGA
[ENA]
¡û
>W1711776954
MVKW01000001
Gammaproteobacteria
Acinetobacter sp. ANC 5600 [MVKW]
421228
421139
-
Ser
TGA
[ENA]
¡û
>W1711776993
MVKW01000003
Gammaproteobacteria
Acinetobacter sp. ANC 5600 [MVKW]
27892
27803
-
Ser
TGA
[ENA]
¡û
>W1711777017
MVKX01000001
Gammaproteobacteria
Acinetobacter amyesii ANC 4945 [MVKX]
665420
665331
-
Ser
TGA
[ENA]
¡û
>W1711777048
MVKX01000005
Gammaproteobacteria
Acinetobacter amyesii ANC 4945 [MVKX]
297583
297494
-
Ser
TGA
[ENA]
¡û
>W1711777049
MVKX01000005
Gammaproteobacteria
Acinetobacter amyesii ANC 4945 [MVKX]
297264
297175
-
Ser
TGA
[ENA]
¡û
>W1712003557
NEGG01000013
Gammaproteobacteria
Acinetobacter sp. ANC 5054 [NEGG]
68054
67965
-
Ser
TGA
[ENA]
¡û
>W1712003558
NEGG01000013
Gammaproteobacteria
Acinetobacter sp. ANC 5054 [NEGG]
50497
50408
-
Ser
TGA
[ENA]
¡û
>W1712003564
NEGG01000015
Gammaproteobacteria
Acinetobacter sp. ANC 5054 [NEGG]
32091
32002
-
Ser
TGA
[ENA]
¡û
>W1712003598
NEGH01000002
Gammaproteobacteria
Acinetobacter sp. ANC 4558 [NEGH]
322412
322323
-
Ser
TGA
[ENA]
¡û
>W1712003605
NEGH01000005
Gammaproteobacteria
Acinetobacter sp. ANC 4558 [NEGH]
12398
12309
-
Ser
TGA
[ENA]
¡û
>W1712018201
NEXW01000001
Gammaproteobacteria
Acinetobacter indicus [NEXW]
158482
158393
-
Ser
TGA
[ENA]
¡û
>W1712084528
NHRO01000005
Gammaproteobacteria
Acinetobacter sp. WCHAc010052 WCHA52 [NHRO]
129586
129675
+
Ser
TGA
[ENA]
¡û
>W131115752
APPY01000044
Gammaproteobacteria
Acinetobacter towneri DSM 14962 = CIP 107472 [APPY]
31748
31837
+
Ser
TGA
[ENA]
¡û
>WENV016559
AACY020465492
Marine microbial communities from Global Ocean Sampling (GOS)
175
84
-
Ser
TGA
[ENA]
>WENV180379640
OBOP01092774
[OBOP] marine metagenome; water
374
285
-
Ser
TGA
[ENA]
¢þ
>WENV180384419
OBOX01046283
[OBOX] marine metagenome; Sterile flask
258
169
-
Ser
TGA
[ENA]
¢þ
>WENV180391823
OBPN01056463
[OBPN] marine metagenome; seawater
428
339
-
Ser
TGA
[ENA]
¢þ
>WENV180587785
OCOO01052700
[OCOO] marine metagenome; seawater
398
487
+
Ser
TGA
[ENA]
¢þ
>WENV181839894
OGVO01021668
[OGVO] freshwater metagenome; freshwater
385
474
+
Ser
TGA
[ENA]
¢þ
>WENV181843847
OGVV01000156
[OGVV] freshwater metagenome; freshwater
2607
2518
-
Ser
TGA
[ENA]
¢þ
>WENV181844082
OGVV01008381
[OGVV] freshwater metagenome; freshwater
436
525
+
Ser
TGA
[ENA]
¢þ
>WENV170146907
CENZ01093719
[CENZ] marine metagenome genome assembly TARA_025_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
11049
11138
+
Ser
TGA
[ENA]
¢þ
>WENV170605788
FUWD010540243
[FUWD] metagenome; unknown
140
51
-
Ser
TGA
[ENA]
¢þ
>WENV170871747
MDTB01209888
[MDTB] marine metagenome; seawater
33751
33662
-
Ser
TGA
[ENA]
¢þ
>WENV170953509
MEHZ011649740
[MEHZ] marine metagenome; marine surface water
10983
10894
-
Ser
TGA
[ENA]
¢þ
>C181178018
CP029397
Gammaproteobacteria
Acinetobacter defluvii WCHA30 [CP029397]
1028404
1028493
+
Ser
TGA
-
¡û
>C181178061
CP029397
Gammaproteobacteria
Acinetobacter defluvii WCHA30 [CP029397]
1029972
1029883
-
Ser
TGA
-
¡û
>C191078941
CP031716
Gammaproteobacteria
Acinetobacter wuhouensis WCHA60 [CP031716]
1078302
1078391
+
Ser
TGA
-
¡û
>C191078942
CP031716
Gammaproteobacteria
Acinetobacter wuhouensis WCHA60 [CP031716]
1196481
1196570
+
Ser
TGA
-
¡û
>C191084820
CP032134
Gammaproteobacteria
Acinetobacter chinensis WCHAc010005 [CP032134]
1160257
1160346
+
Ser
TGA
-
¡û
>C191087149
CP032279
Gammaproteobacteria
Acinetobacter sp. WCHAc010034 [CP032279]
3003110
3003199
+
Ser
TGA
-
¡û
>C191087197
CP032279
Gammaproteobacteria
Acinetobacter sp. WCHAc010034 [CP032279]
922355
922266
-
Ser
TGA
-
¡û
>C191101050
CP033133
Gammaproteobacteria
Acinetobacter wuhouensis WCHAW010062 [CP033133]
1126846
1126935
+
Ser
TGA
-
¡û
>C191101052
CP033133
Gammaproteobacteria
Acinetobacter wuhouensis WCHAW010062 [CP033133]
1280172
1280261
+
Ser
TGA
-
¡û
>W141562591
JHZH01000024
Gammaproteobacteria
Acinetobacter towneri DSM 14962 = CIP 107472 [JHZH]
6873
6784
-
Ser
TGA
[ENA]
¡û
>W1911141633
NOZT01000030
Gammaproteobacteria
Acinetobacter sp. YT-02 [NOZT]
33363
33452
+
Ser
TGA
[ENA]
¡û
>W1911490802
OANT01000005
Gammaproteobacteria
Acinetobacter puyangensis ANC 4466 [OANT]
14051
13962
-
Ser
TGA
[ENA]
¡û
>W1911490816
OANT01000014
Gammaproteobacteria
Acinetobacter puyangensis ANC 4466 [OANT]
78525
78614
+
Ser
TGA
[ENA]
¡û
>W1511547798
JZRF01000004
Gammaproteobacteria
Acinetobacter indicus KM7 [JZRF]
302302
302213
-
Ser
TGA
[ENA]
¡û
>W1611030091
LZDS01000026
Gammaproteobacteria
Acinetobacter gandensis [LZDS]
152319
152230
-
Ser
TGA
[ENA]
¡û
>W1611030092
LZDS01000026
Gammaproteobacteria
Acinetobacter gandensis [LZDS]
151941
151852
-
Ser
TGA
[ENA]
¡û
>W1611030103
LZDS01000027
Gammaproteobacteria
Acinetobacter gandensis [LZDS]
82198
82109
-
Ser
TGA
[ENA]
¡û
>W1611065546
MBPQ01001536
Gammaproteobacteria
Acinetobacter sp. WCHAc010034 WCHA34 [MBPQ]
31990
31901
-
Ser
TGA
[ENA]
¡û
>W1611065603
MBPQ01004010
Gammaproteobacteria
Acinetobacter sp. WCHAc010034 WCHA34 [MBPQ]
34682
34771
+
Ser
TGA
[ENA]
¡û
>W1611065649
MBPR01002321
Gammaproteobacteria
Acinetobacter wuhouensis WCHA60 [MBPR]
4424
4335
-
Ser
TGA
[ENA]
¡û
>W1611065650
MBPR01002499
Gammaproteobacteria
Acinetobacter wuhouensis WCHA60 [MBPR]
20186
20275
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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