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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.278767 (22 seq.)
>C171063267
CP017478
Bacteroidota
Urechidicola croceus LPB0138 [CP017478]
336070
336145
+
His
GTG
-
¡û
>WENV180084565
MPMD02210755
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
592
517
-
His
GTG
[ENA]
¢þ
>WENV180365285
OBOB01063701
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
334
259
-
His
GTG
[ENA]
¢þ
>W141231634
BAUG01000055
Bacteroidota
Tenacibaculum maritimum NBRC 15946 [BAUG]
12483
12407
-
His
GTG
[ENA]
¡û
>WENV183717113
PDWJ01000472
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
15899
15974
+
His
GTG
[ENA]
¢þ
>WENV170015979
AZIJ01006057
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
207
282
+
His
GTG
[ENA]
¢þ
>WENV170412462
CEUK01032702
[CEUK] marine metagenome genome assembly TARA_125_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
60608
60533
-
His
GTG
[ENA]
¢þ
>WENV170654497
JRYL01000083
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
74988
75063
+
His
GTG
[ENA]
¢þ
>WENV170783841
MAAC01019214
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
296263
296188
-
His
GTG
[ENA]
¢þ
>WENV170826052
MDSY01104751
[MDSY] marine metagenome; seawater
7653
7728
+
His
GTG
[ENA]
¢þ
>C181069070
CP022585
Bacteroidota
Candidatus Fluviicola riflensis [CP022585]
2792075
2792000
-
His
GTG
-
¡û
>C181219863
LT634361
Bacteroidota
Tenacibaculum maritimum NCIMB 2154 [LT634361]
2305487
2305411
-
His
GTG
-
¡û
>C191018109
CP020822
Bacteroidota
Tenacibaculum maritimum TM-KORJJ [CP020822]
1967135
1967059
-
His
GTG
-
¡û
>C191182533
CP040749
Bacteroidota
Aureibaculum algae 10Alg 115 [CP040749]
3177333
3177258
-
His
GTG
-
¡û
>W1910698711
MEOY01001817
Bacteroidota
Bacteroidetes bacterium RIFCSPHIGHO2_02_FULL_44_7 [MEOY]
1985
2060
+
His
GTG
[ENA]
¡û
>W1910728235
MGWL01000001
Bacteroidota
Fluviicola sp. RIFCSPHIGHO2_01_FULL_43_53 [MGWL]
307407
307482
+
His
GTG
[ENA]
¡û
>W1910728265
MGWM01000001
Bacteroidota
Candidatus Fluviicola riflensis RIFCSPHIGHO2_02_FULL_43_260 [MGWM]
307302
307377
+
His
GTG
[ENA]
¡û
>W1910728312
MGWN01000012
Bacteroidota
Fluviicola sp. RIFCSPHIGHO2_12_FULL_43_24 [MGWN]
208888
208963
+
His
GTG
[ENA]
¡û
>W1911765435
QXCW01000002
Bacteroidota
Flavobacteriaceae bacterium MAR_2010_72 MAR_2010_72 Mar_2010_72 [QXCW]
1418893
1418968
+
His
GTG
[ENA]
¡û
>W1810789326
QRGD01000005
Bacteroidota
Aureibaculum luteum SM1352 [QRGD]
139717
139642
-
His
GTG
[ENA]
¡û
>C121007079
CP003156
Bacteroidota
Owenweeksia hongkongensis DSM 17368 [CP003156]
1453413
1453488
+
His
GTG
[Ensembl]
¡û
>W1710606153
FWXO01000004
Bacteroidota
Cellulophaga tyrosinoxydans [FWXO]
278772
278697
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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