This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.278793 (56 seq.)
>W131099685
AOTL01000021
Gammaproteobacteria
Methylotuvimicrobium buryatense 5G [AOTL]
236738
236813
+
His
GTG
[ENA]
¡û
>W1711129818
LUUJ01000049
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
111540
111615
+
His
GTG
[ENA]
¡û
>W1711129902
LUUL01000062
Gammaproteobacteria
Methylomonas koyamae [LUUL]
479
404
-
His
GTG
[ENA]
¡û
>W131186016
ARVS01000002
Gammaproteobacteria
Methylobacter marinus A45 [ARVS]
89891
89816
-
His
GTG
[ENA]
¡û
>W131229544
AUGW01000014
Gammaproteobacteria
Oceanospirillum maris DSM 6286 [AUGW]
41590
41515
-
His
GTG
[ENA]
¡û
>W131229545
AUGW01000014
Gammaproteobacteria
Oceanospirillum maris DSM 6286 [AUGW]
41363
41288
-
His
GTG
[ENA]
¡û
>W131235629
AULT01000016
Gammaproteobacteria
Oceanospirillum beijerinckii DSM 7166 [AULT]
15128
15203
+
His
GTG
[ENA]
¡û
>W131235633
AULT01000016
Gammaproteobacteria
Oceanospirillum beijerinckii DSM 7166 [AULT]
15629
15704
+
His
GTG
[ENA]
¡û
>W1711494841
MKMC01000008
Gammaproteobacteria
Methylomonas sp. LWB [MKMC]
19267
19192
-
His
GTG
[ENA]
¡û
>W1711631531
MPRJ01000042
Gammaproteobacteria
Solemya velesiana gill symbiont gill symbiont [MPRJ]
18730
18805
+
His
GTG
[ENA]
¡û
>W1711632606
MPSY01000010
Gammaproteobacteria
Methylococcales bacterium OPU3_GD_OMZ [MPSY]
2056
1981
-
His
GTG
[ENA]
¡û
>W1711699696
MSLT01000012
Gammaproteobacteria
Thioflexithrix psekupsensis psekupsii [MSLT]
92049
91974
-
His
GTG
[ENA]
¡û
>W1711711609
MTBA01000005
Gammaproteobacteria
Oceanospirillum sanctuarii AK56 [MTBA]
16851
16926
+
His
GTG
[ENA]
¡û
>W1711711611
MTBA01000005
Gammaproteobacteria
Oceanospirillum sanctuarii AK56 [MTBA]
17095
17170
+
His
GTG
[ENA]
¡û
>W1711726798
MTSD02000002
Gammaproteobacteria
Oceanospirillum linum [MTSD]
278684
278609
-
His
GTG
[ENA]
¡û
>W1711726800
MTSD02000002
Gammaproteobacteria
Oceanospirillum linum [MTSD]
278446
278371
-
His
GTG
[ENA]
¡û
>W1711726933
MTSM01000011
Gammaproteobacteria
Oceanospirillum multiglobuliferum [MTSM]
6576
6651
+
His
GTG
[ENA]
¡û
>WENV180297796
OBJA01086594
[OBJA] soil metagenome; sediment, water from around vicinity
80
155
+
His
GTG
[ENA]
¢þ
>WENV180299330
OBJC01001104
[OBJC] metagenome; water
586
511
-
His
GTG
[ENA]
¢þ
>WENV180590014
OCOS01066797
[OCOS] marine metagenome; Sterile flask
253
328
+
His
GTG
[ENA]
¢þ
>WENV182560896
OJDV01000169
[OJDV] seawater metagenome; Sea water
7965
7890
-
His
GTG
[ENA]
¢þ
>WENV183682094
ORMF010396841
[ORMF] groundwater metagenome; groundwater
1322
1247
-
His
GTG
[ENA]
¢þ
>WENV183699728
OZSS01046785
[OZSS] metagenome; Seawater sample
81
156
+
His
GTG
[ENA]
¢þ
>WENV183703571
PDVJ01023929
[PDVJ] alkali sediment metagenome; glacial lake sediment
282
357
+
His
GTG
[ENA]
¢þ
>WENV170606784
FUWD010732223
[FUWD] metagenome; unknown
90
15
-
His
GTG
[ENA]
¢þ
>WENV170663419
JYMV01005380
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
2738
2813
+
His
GTG
[ENA]
¢þ
>WENV170665928
JYMV01031553
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
2469
2544
+
His
GTG
[ENA]
¢þ
>WENV170667569
JYMV01048991
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
30895
30820
-
His
GTG
[ENA]
¢þ
>WENV170766244
LWDU01041039
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
1809
1734
-
His
GTG
[ENA]
¢þ
>WENV170766488
LWDU01041786
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
5656
5581
-
His
GTG
[ENA]
¢þ
>WENV170766516
LWDU01041929
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
12896
12821
-
His
GTG
[ENA]
¢þ
>WENV170766594
LWDU01042192
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
2558
2483
-
His
GTG
[ENA]
¢þ
>WENV170879075
MDTC01088792
[MDTC] marine metagenome; seawater
9852
9779
-
His
GTG
[ENA]
¢þ
>C181088669
CP023669
Gammaproteobacteria
Methylomonas koyamae LM6 [CP023669]
4073654
4073729
+
His
GTG
-
¡û
>C191027179
CP024202
Gammaproteobacteria
Methylomicrobium sp. wino1 [CP024202]
1698078
1698153
+
His
GTG
-
¡û
>C191143442
CP035467
Gammaproteobacteria
Methylotuvimicrobium buryatense 5GB1C [CP035467]
4142912
4142837
-
His
GTG
-
¡û
>W141701816
JMLA01000001
Gammaproteobacteria
Methylobacter tundripaludum 21/22 [JMLA]
2534142
2534217
+
His
GTG
[ENA]
¡û
>W141807259
JPOH01000001
Gammaproteobacteria
Methylobacter tundripaludum 31/32 [JPOH]
3863950
3864025
+
His
GTG
[ENA]
¡û
>W141807556
JPON01000001
Gammaproteobacteria
Methylomarinum vadi [JPON]
3352487
3352562
+
His
GTG
[ENA]
¡û
>W141817442
JQKS01000006
Gammaproteobacteria
Methylobacter sp. BBA5.1 [JQKS]
50249
50174
-
His
GTG
[ENA]
¡û
>W141821708
JQNS01000005
Gammaproteobacteria
Methylobacter whittenburyi [JQNS]
1281192
1281267
+
His
GTG
[ENA]
¡û
>W1810296019
PTIY01000009
Gammaproteobacteria
Methylobacter tundripaludum OWC-G53F [PTIY]
99485
99560
+
His
GTG
[ENA]
¡û
>W1810296064
PTIZ01000009
Gammaproteobacteria
Methylobacter tundripaludum OWC-DMM [PTIZ]
81432
81357
-
His
GTG
[ENA]
¡û
>SRA1008372
SRR020490.330174
Microbial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041)
87
13
-
His
GTG
[SRA]
>C151098005
FO082060
Gammaproteobacteria
Methylotuvimicrobium alcaliphilum 20Z [FO082060]
4017747
4017672
-
His
GTG
[Ensembl]
¡û
>C11114739
CP002738
Gammaproteobacteria
Methylomonas methanica MC09 [CP002738]
4512922
4512847
-
His
GTG
[Ensembl]
¡û
>W11137245
AEGW02000011
Gammaproteobacteria
Methylobacter tundripaludum SV96 [AEGW]
1211
1136
-
His
GTG
[ENA]
¡û
>C161050921
CP013099
Gammaproteobacteria
Candidatus Tenderia electrophaga [CP013099]
2286139
2286064
-
His
GTG
-
¡û
>WENV057049
AACY023281744
Marine microbial communities from Global Ocean Sampling (GOS)
560
637
+
His
GTG
[ENA]
>W1610046472
BBCK01000011
Gammaproteobacteria
Methylomonas koyamae JCM 16701 [BBCK]
25096
25021
-
His
GTG
[ENA]
¡û
>W1610940891
LUUJ01000049
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
111540
111615
+
His
GTG
[ENA]
¡û
>W1610940975
LUUL01000062
Gammaproteobacteria
Methylomonas koyamae [LUUL]
479
404
-
His
GTG
[ENA]
¡û
>W1710043268
BBCK01000011
Gammaproteobacteria
Methylomonas koyamae JCM 16701 [BBCK]
25096
25021
-
His
GTG
[ENA]
¡û
>W1710538512
FNUP01000003
Gammaproteobacteria
Oleiphilus messinensis [FNUP]
278903
278828
-
His
GTG
[ENA]
¡û
>W1710538514
FNUP01000003
Gammaproteobacteria
Oleiphilus messinensis [FNUP]
278665
278590
-
His
GTG
[ENA]
¡û
>W1710601401
FUXG01000014
Gammaproteobacteria
Oceanospirillum multiglobuliferum [FUXG]
112891
112816
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK