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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.27883 (38 seq.)
>W1711129162
LUTU01000001
Alphaproteobacteria
Gluconobacter cerinus [LUTU]
89084
89174
+
Ser
GGA
[ENA]
¡û
>W1711466263
MJMF01000011
Alphaproteobacteria
Novacetimonas hansenii [MJMF]
13791
13701
-
Ser
GGA
[ENA]
¡û
>C171032968
CP014681
Alphaproteobacteria
Kozakia baliensis NBRC 16680 [CP014681]
103953
103863
-
Ser
GGA
-
¡û
>C171119422
CP021467
Alphaproteobacteria
Komagataeibacter europaeus SRCM101446 [CP021467]
2822501
2822411
-
Ser
GGA
-
¡û
>W131176032
ARJS01000041
Alphaproteobacteria
Saccharibacter floricola DSM 15669 [ARJS]
40174
40084
-
Ser
GGA
[ENA]
¡û
>W131222538
AUBI01000038
Alphaproteobacteria
Acetobacter nitrogenifigens DSM 23921 [AUBI]
1493
1403
-
Ser
GGA
[ENA]
¡û
>WENV181163510
OEIQ01061052
[OEIQ] soil metagenome; soil
94
184
+
Ser
GGA
[ENA]
¢þ
>WENV181164106
OEIR01021060
[OEIR] soil metagenome; soil
157
247
+
Ser
GGA
[ENA]
¢þ
>W141247925
CBLX010000008
Alphaproteobacteria
Asaia bogorensis SF2.1 [CBLX]
48514
48424
-
Ser
GGA
[ENA]
¡û
>W141402026
JDTI01000193
Alphaproteobacteria
Komagataeibacter rhaeticus AF1 [JDTI]
145445
145355
-
Ser
GGA
[ENA]
¡û
>C191150974
CP036404
Alphaproteobacteria
Komagataeibacter saccharivorans JH1 [CP036404]
2434160
2434070
-
Ser
GGA
-
¡û
>C191157872
CP038143
Alphaproteobacteria
Oecophyllibacter saccharovorans Ha5 [CP038143]
1886083
1885993
-
Ser
GGA
-
¡û
>W1910694755
MDTO01000334
Alphaproteobacteria
Komagataeibacter xylinus E26 [MDTO]
4620
4710
+
Ser
GGA
[ENA]
¡û
>W1910695629
MDVZ01000013
Alphaproteobacteria
Komagataeibacter xylinus BCRC 12334 [MDVZ]
5092
5182
+
Ser
GGA
[ENA]
¡û
>C09106295
CP001189
Alphaproteobacteria
Gluconacetobacter diazotrophicus PA1 5 PAl 5; ATCC 49037 [CP001189]
2456406
2456496
+
Ser
GGA
[Ensembl]
¡û
>W1910929251
NIRT01000019
Alphaproteobacteria
Komagataeibacter nataicola LMG 1536 [NIRT]
9921
9831
-
Ser
GGA
[ENA]
¡û
>W1910990436
NKTX01000011
Alphaproteobacteria
Komagataeibacter oboediens LMG 18849 [NKTX]
49593
49683
+
Ser
GGA
[ENA]
¡û
>W1910990516
NKTZ01000001
Alphaproteobacteria
Komagataeibacter rhaeticus LMG 22126 [NKTZ]
409162
409072
-
Ser
GGA
[ENA]
¡û
>W1910990772
NKUE01000007
Alphaproteobacteria
Novacetimonas maltaceti LMG 1529 [NKUE]
119358
119268
-
Ser
GGA
[ENA]
¡û
>W1910990803
NKUF01000003
Alphaproteobacteria
Gluconacetobacter entanii LTH 4560 [NKUF]
117786
117696
-
Ser
GGA
[ENA]
¡û
>W1810223490
POTC01000011
Alphaproteobacteria
Novacetimonas maltaceti LMG 1529 [POTC]
85213
85123
-
Ser
GGA
[ENA]
¡û
>W1810268406
PRCW01000100
Alphaproteobacteria
Novacetimonas pomaceti AV446 [PRCW]
12770
12860
+
Ser
GGA
[ENA]
¡û
>W1810763155
QQAW01000008
Alphaproteobacteria
Gluconacetobacter liquefaciens DSM 5603 [QQAW]
125106
125196
+
Ser
GGA
[ENA]
¡û
>W1810894183
QUWV01000070
Alphaproteobacteria
Komagataeibacter melaceti AV 382 [QUWV]
40109
40019
-
Ser
GGA
[ENA]
¡û
>C151006037
CP004360
Alphaproteobacteria
Komagataeibacter xylinus E25 [CP004360]
3051055
3051145
+
Ser
GGA
[Ensembl]
¡û
>W11186792
CADP01000050
Alphaproteobacteria
Komagataeibacter europaeus LMG 18890 [CADP]
19055
19145
+
Ser
GGA
[ENA]
¡û
>W1610041131
BANF01000038
Alphaproteobacteria
Komagataeibacter intermedius TF2 [BANF]
40576
40486
-
Ser
GGA
[ENA]
¡û
>W1610624114
LHZD01000009
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
64572
64482
-
Ser
GGA
[ENA]
¡û
>W1610624279
LHZG01000177
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
85720
85810
+
Ser
GGA
[ENA]
¡û
>W1610624491
LHZL01000150
Alphaproteobacteria
Gluconobacter oxydans [LHZL]
8340
8250
-
Ser
GGA
[ENA]
¡û
>W1610624763
LHZR01000105
Alphaproteobacteria
Gluconobacter albidus [LHZR]
520
430
-
Ser
GGA
[ENA]
¡û
>W1610940235
LUTU01000001
Alphaproteobacteria
Gluconobacter cerinus [LUTU]
89084
89174
+
Ser
GGA
[ENA]
¡û
>W1710038329
BANF01000038
Alphaproteobacteria
Komagataeibacter intermedius TF2 [BANF]
40576
40486
-
Ser
GGA
[ENA]
¡û
>W1710624721
JOPF01000004
Alphaproteobacteria
Gluconobacter sp. DsW_056 [JOPF]
25918
25828
-
Ser
GGA
[ENA]
¡û
>W1710755232
LHZD01000009
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
64572
64482
-
Ser
GGA
[ENA]
¡û
>W1710755397
LHZG01000177
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
85720
85810
+
Ser
GGA
[ENA]
¡û
>W1710755609
LHZL01000150
Alphaproteobacteria
Gluconobacter oxydans [LHZL]
8340
8250
-
Ser
GGA
[ENA]
¡û
>W1710755881
LHZR01000105
Alphaproteobacteria
Gluconobacter albidus [LHZR]
520
430
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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