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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.279294 (75 seq.)
>W131249956
CAUE01000096
Gammaproteobacteria
Coxiella burnetii Z3055 [CAUE]
14796
14719
-
Pro
GGG
[ENA]
¡û
>W131251131
CAVF010000020
Gammaproteobacteria
Coxiella burnetii Cb175_Guyana [CAVF]
46027
45950
-
Pro
GGG
[ENA]
¡û
>C171071285
CP018005
Gammaproteobacteria
Coxiella burnetii RSA439 [CP018005]
1240941
1240864
-
Pro
GGG
-
¡û
>C171073887
CP018150
Gammaproteobacteria
Coxiella burnetii 'MSU Goat Q177' [CP018150]
1134934
1134857
-
Pro
GGG
-
¡û
>C171110915
CP020616
Gammaproteobacteria
Coxiella burnetii RSA 439 [CP020616]
1240928
1240851
-
Pro
GGG
-
¡û
>C171127860
HG825990
Gammaproteobacteria
Coxiella burnetii Cb175_Guyana [HG825990]
1267229
1267152
-
Pro
GGG
-
¡û
>C005233
AE016828
Gammaproteobacteria
Coxiella burnetii RSA 493 [AE016828]
1266991
1266915
-
Pro
GGG
[Ensembl]
¡û
>w024175
AAYJ01000051
Gammaproteobacteria
Coxiella burnetii RSA 334 [AAYJ]
4849
4927
+
Pro
GGG
[ENA]
¡û
>w020075
AAUP01000008
Gammaproteobacteria
Coxiella burnetii 'MSU Goat Q177' [AAUP]
55250
55172
-
Pro
GGG
[ENA]
¡û
>w016778
AAQO01000034
Gammaproteobacteria
Coxiella burnetii RSA 331 [AAQO]
5014
5092
+
Pro
GGG
[ENA]
¡û
>w016634
AAQI01000005
Gammaproteobacteria
Coxiella burnetii Dugway 7E9-12 [AAQI] Dugway 7E9-12 [AAQI]
97664
97742
+
Pro
GGG
[ENA]
¡û
>WENV180042520
LQAF01000860
[LQAF] bioreactor metagenome; bioreactor_2 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
1656
1732
+
Pro
GGG
[ENA]
¢þ
>WENV180103380
OAPA01023930
[OAPA] marine metagenome; ENVO:00002010
396
320
-
Pro
GGG
[ENA]
¢þ
>W141027226
AKYP01000012
Gammaproteobacteria
Coxiella burnetii cb109 [AKYP]
14685
14608
-
Pro
GGG
[ENA]
¡û
>WENV180367744
OBOF01002446
[OBOF] marine metagenome; ENVO:00002010
313
237
-
Pro
GGG
[ENA]
¢þ
>W141055170
AONB01000001
Gammaproteobacteria
Nitrincola nitratireducens AK23 [AONB]
303626
303550
-
Pro
GGG
[ENA]
¡û
>WENV180636395
OCRF01003663
[OCRF] marine metagenome; niskin bottle
439
515
+
Pro
GGG
[ENA]
¢þ
>C08003021
CP000733
Gammaproteobacteria
Coxiella burnetii Dugway 5J108-111 [CP000733]
1399589
1399512
-
Pro
GGG
[Ensembl]
¡û
>C08003059
CP000890
Gammaproteobacteria
Coxiella burnetii RSA 331 [CP000890]
1343083
1343006
-
Pro
GGG
[Ensembl]
¡û
>W141254783
CBTH010000094
Gammaproteobacteria
Coxiella burnetii Cb185 [CBTH]
44295
44218
-
Pro
GGG
[ENA]
¡û
>W141260678
CCAH010000019
Gammaproteobacteria
Coxiella burnetii [CCAH]
46036
45959
-
Pro
GGG
[ENA]
¡û
>W141260720
CCAI010000021
Gammaproteobacteria
Coxiella burnetii [CCAI]
46036
45959
-
Pro
GGG
[ENA]
¡û
>W141260758
CCAJ010000039
Gammaproteobacteria
Coxiella burnetii [CCAJ]
46034
45957
-
Pro
GGG
[ENA]
¡û
>W141260793
CCAK010000095
Gammaproteobacteria
Coxiella burnetii [CCAK]
15026
14949
-
Pro
GGG
[ENA]
¡û
>W141260855
CCAL010000019
Gammaproteobacteria
Coxiella burnetii [CCAL]
45894
45817
-
Pro
GGG
[ENA]
¡û
>W141260893
CCAM010000056
Gammaproteobacteria
Coxiella burnetii [CCAM]
14933
14856
-
Pro
GGG
[ENA]
¡û
>W141267598
CCNR01000029
Gammaproteobacteria
Coxiella burnetii RSA 493 [CCNR]
44230
44307
+
Pro
GGG
[ENA]
¡û
>WENV170015495
AZIH01000734
[AZIH] marine sediment metagenome; enrichment culture of sample MGS-ANC(UA) from oil contaminated site at the Ancona Port
156
80
-
Pro
GGG
[ENA]
¢þ
>WENV170016479
AZIK01008491
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
2199
2123
-
Pro
GGG
[ENA]
¢þ
>WENV170402142
CEUE01299415
[CEUE] marine metagenome genome assembly TARA_133_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
16836
16912
+
Pro
GGG
[ENA]
¢þ
>WENV170508962
CEVX01315276
[CEVX] marine metagenome genome assembly TARA_152_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
271
347
+
Pro
GGG
[ENA]
¢þ
>WENV170883699
MDTC01170772
[MDTC] marine metagenome; seawater
41051
41127
+
Pro
GGG
[ENA]
¢þ
>C191091535
CP032542
Gammaproteobacteria
Coxiella burnetii 2014-PE-15890 [CP032542]
1069653
1069729
+
Pro
GGG
-
¡û
>C191134934
CP035112
Gammaproteobacteria
Coxiella burnetii nine mile phase II [CP035112]
1525606
1525530
-
Pro
GGG
-
¡û
>C191174672
CP040059
Gammaproteobacteria
Coxiella burnetii RSA439 [CP040059]
1240802
1240726
-
Pro
GGG
-
¡û
>W141557241
JHUZ01000009
Gammaproteobacteria
Balneatrix alpica DSM 16621 [JHUZ]
60280
60204
-
Pro
GGG
[ENA]
¡û
>W141557242
JHUZ01000009
Gammaproteobacteria
Balneatrix alpica DSM 16621 [JHUZ]
60162
60086
-
Pro
GGG
[ENA]
¡û
>W141810543
JPVV01000035
Gammaproteobacteria
Coxiella burnetii [JPVV]
14711
14634
-
Pro
GGG
[ENA]
¡û
>C09102974
CP001019
Gammaproteobacteria
Coxiella burnetii CbuG_Q212 [CP001019]
660382
660459
+
Pro
GGG
[Ensembl]
¡û
>C09103039
CP001020
Gammaproteobacteria
Coxiella burnetii CbuK_Q154 [CP001020]
1135023
1134946
-
Pro
GGG
[Ensembl]
¡û
>W1911118969
NOLM01000020
Gammaproteobacteria
Coxiella burnetii Dugway 7E65-68 [NOLM]
47781
47705
-
Pro
GGG
[ENA]
¡û
>W1911119011
NOLN01000019
Gammaproteobacteria
Coxiella burnetii Dugway 7D77-80 [NOLN]
47781
47705
-
Pro
GGG
[ENA]
¡û
>W1911119062
NOLO01000015
Gammaproteobacteria
Coxiella burnetii Turkey RSA315 [NOLO]
45921
45845
-
Pro
GGG
[ENA]
¡û
>W1911119073
NOLP01000021
Gammaproteobacteria
Coxiella burnetii Ko Q229 [NOLP]
54298
54374
+
Pro
GGG
[ENA]
¡û
>W1911119146
NOLQ01000015
Gammaproteobacteria
Coxiella burnetii Dyer RSA345 [NOLQ]
45907
45831
-
Pro
GGG
[ENA]
¡û
>W1911119188
NOLR01000018
Gammaproteobacteria
Coxiella burnetii Idaho Goat Q195 [NOLR]
45947
45871
-
Pro
GGG
[ENA]
¡û
>W1911119230
NOLS01000015
Gammaproteobacteria
Coxiella burnetii Ohio 314 RSA338 [NOLS]
45921
45845
-
Pro
GGG
[ENA]
¡û
>W1911119272
NOLT01000015
Gammaproteobacteria
Coxiella burnetii Ohio 314 RSA270 [NOLT]
45921
45845
-
Pro
GGG
[ENA]
¡û
>W1911119314
NOLU01000016
Gammaproteobacteria
Coxiella burnetii California 16 RSA350 [NOLU]
45921
45845
-
Pro
GGG
[ENA]
¡û
>W1911119356
NOLV01000015
Gammaproteobacteria
Coxiella burnetii California 33 RSA329 [NOLV]
45921
45845
-
Pro
GGG
[ENA]
¡û
>W1911136655
NOVF01000015
Gammaproteobacteria
Coxiella burnetii California 16 RSA350 clone 2 [NOVF]
45921
45845
-
Pro
GGG
[ENA]
¡û
>W1911136697
NOVG01000016
Gammaproteobacteria
Coxiella burnetii Nine Mile RSA514 [NOVG]
45849
45773
-
Pro
GGG
[ENA]
¡û
>W1911136739
NOVH01000016
Gammaproteobacteria
Coxiella burnetii Nine Mile RSA363 [NOVH]
45921
45845
-
Pro
GGG
[ENA]
¡û
>W1911136777
NOVI01000031
Gammaproteobacteria
Coxiella burnetii M44 RSA461 [NOVI]
44258
44182
-
Pro
GGG
[ENA]
¡û
>W1911136823
NOVJ01000015
Gammaproteobacteria
Coxiella burnetii Australia RSA425 [NOVJ]
45921
45845
-
Pro
GGG
[ENA]
¡û
>W1911136865
NOVK01000015
Gammaproteobacteria
Coxiella burnetii Australia RSA297 [NOVK]
45921
45845
-
Pro
GGG
[ENA]
¡û
>W1810059839
PDLP01000006
Gammaproteobacteria
Coxiella burnetii Leningrad-2 [PDLP]
51549
51625
+
Pro
GGG
[ENA]
¡û
>W1810235674
PPFM01000002
Gammaproteobacteria
Coxiella burnetii Q559 [PPFM]
171396
171472
+
Pro
GGG
[ENA]
¡û
>W1810235715
PPFN01000002
Gammaproteobacteria
Coxiella burnetii Q556 [PPFN]
171396
171472
+
Pro
GGG
[ENA]
¡û
>W1810235758
PPFO01000002
Gammaproteobacteria
Coxiella burnetii Q545 [PPFO]
176271
176347
+
Pro
GGG
[ENA]
¡û
>W1810235806
PPFP01000021
Gammaproteobacteria
Coxiella burnetii Q540 [PPFP]
14905
14829
-
Pro
GGG
[ENA]
¡û
>W1810235842
PPFQ01000002
Gammaproteobacteria
Coxiella burnetii Q532 [PPFQ]
45941
45865
-
Pro
GGG
[ENA]
¡û
>W1810235878
PPFR01000003
Gammaproteobacteria
Coxiella burnetii Cb3506 [PPFR]
14762
14686
-
Pro
GGG
[ENA]
¡û
>W1810680814
QKRX01000014
Gammaproteobacteria
Nitrincola tibetensis xg18 [QKRX]
10180
10104
-
Pro
GGG
[ENA]
¡û
>C151077689
CP011126
Gammaproteobacteria
Candidatus Coxiella mudrowiae CRt [CP011126]
578962
579037
+
Pro
GGG
[Ensembl]
¡û
>C151077696
CP011126
Gammaproteobacteria
Candidatus Coxiella mudrowiae CRt [CP011126]
726441
726516
+
Pro
GGG
[Ensembl]
¡û
>C151102387
LK937696
Gammaproteobacteria
Coxiella burnetii Z3055 [LK937696]
1267189
1267112
-
Pro
GGG
-
¡û
>W1510060760
CCXO01000003
Gammaproteobacteria
Coxiella burnetii CbuK_Q154 Cb196_Saudi_Arabia [CCXO]
567418
567341
-
Pro
GGG
[ENA]
¡û
>W1510061118
CCYB01000029
Gammaproteobacteria
Coxiella burnetii RSA 493 [CCYB]
44230
44307
+
Pro
GGG
[ENA]
¡û
>W1510064641
CDBG01000001
Gammaproteobacteria
Coxiella burnetii RSA 493 Cb171_QLYMPHOMA [CDBG]
1343321
1343244
-
Pro
GGG
[ENA]
¡û
>W1511349162
JRLB01000006
Gammaproteobacteria
Nitrincola sp. A-D6 [JRLB]
33418
33494
+
Pro
GGG
[ENA]
¡û
>W1511555113
JZWL01000001
Gammaproteobacteria
Coxiella burnetii NL-Limburg [JZWL]
1303692
1303615
-
Pro
GGG
[ENA]
¡û
>C161017359
CP007555
Gammaproteobacteria
Coxiella burnetii str. Namibia [CP007555]
1138428
1138351
-
Pro
GGG
[Ensembl]
¡û
>C161059041
CP013667
Gammaproteobacteria
Coxiella burnetii 3262 [CP013667]
1069737
1069814
+
Pro
GGG
-
¡û
>C161071906
CP014354
Gammaproteobacteria
Coxiella burnetii 3345937 [CP014354]
1005354
1005431
+
Pro
GGG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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