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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.279389 (43 seq.)
>C007550
CP000112
Thermodesulfobacteriota
Oleidesulfovibrio alaskensis G20 [CP000112]
3405274
3405199
-
Ala
GGC
[Ensembl]
¡û
>C008080
CP000527
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris DP4 [CP000527]
3454265
3454190
-
Ala
GGC
[Ensembl]
¡û
>C008081
CP000527
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris DP4 [CP000527]
3444115
3444040
-
Ala
GGC
[Ensembl]
¡û
>WENV180205056
OBAH01004645
[OBAH] human gut metagenome; human gut
4763
4838
+
Ala
GGC
[ENA]
¢þ
>WENV180205714
OBAH01078530
[OBAH] human gut metagenome; human gut
427
502
+
Ala
GGC
[ENA]
¢þ
>WENV180243603
OBDJ01040702
[OBDJ] human gut metagenome; human gut
202
277
+
Ala
GGC
[ENA]
¢þ
>WENV180298712
OBJA01555400
[OBJA] soil metagenome; sediment, water from around vicinity
99
174
+
Ala
GGC
[ENA]
¢þ
>WENV181460522
OGEL01018463
[OGEL] metagenome; Human gut stool
918
993
+
Ala
GGC
[ENA]
¢þ
>WENV181669291
OGOL01018656
[OGOL] human gut metagenome; faeces
1179
1104
-
Ala
GGC
[ENA]
¢þ
>WENV181727623
OGQA01001526
[OGQA] human gut metagenome; faeces
10101
10026
-
Ala
GGC
[ENA]
¢þ
>WENV181898438
OGXT01005145
[OGXT] human gut metagenome; faeces
5881
5806
-
Ala
GGC
[ENA]
¢þ
>WENV181898702
OGXT01010498
[OGXT] human gut metagenome; faeces
2282
2207
-
Ala
GGC
[ENA]
¢þ
>WENV181955009
OGZK01001035
[OGZK] human gut metagenome; faeces
19663
19588
-
Ala
GGC
[ENA]
¢þ
>WENV181955301
OGZK01002348
[OGZK] human gut metagenome; faeces
6163
6088
-
Ala
GGC
[ENA]
¢þ
>WENV182128407
OHJY01002456
[OHJY] human gut metagenome; feces
1290
1215
-
Ala
GGC
[ENA]
¢þ
>WENV182134865
OHKI01002180
[OHKI] human gut metagenome; feces
1456
1381
-
Ala
GGC
[ENA]
¢þ
>WENV182171727
OHMX01016121
[OHMX] human gut metagenome; feces
26
101
+
Ala
GGC
[ENA]
¢þ
>WENV182264368
OHTU01017660
[OHTU] human gut metagenome; feces
7
82
+
Ala
GGC
[ENA]
¢þ
>WENV182392431
OIEG01020302
[OIEG] human gut metagenome; human gut
1024
949
-
Ala
GGC
[ENA]
¢þ
>WENV182523248
OIWS01005548
[OIWS] human gut metagenome; faeces
5714
5639
-
Ala
GGC
[ENA]
¢þ
>WENV182731412
OJQA01000175
[OJQA] human gut metagenome; stool sample
30060
30135
+
Ala
GGC
[ENA]
¢þ
>WENV182731576
OJQA01000956
[OJQA] human gut metagenome; stool sample
6837
6912
+
Ala
GGC
[ENA]
¢þ
>WENV182888813
OKSE01005392
[OKSE] human gut metagenome; faeces
1683
1758
+
Ala
GGC
[ENA]
¢þ
>WENV183258551
OLRN01009644
[OLRN] human gut metagenome; faeces
1160
1235
+
Ala
GGC
[ENA]
¢þ
>WENV183270082
OLRV01003240
[OLRV] human gut metagenome; faeces
11151
11076
-
Ala
GGC
[ENA]
¢þ
>WENV183330782
OLWB01022045
[OLWB] human gut metagenome; faeces
894
969
+
Ala
GGC
[ENA]
¢þ
>WENV183639561
OQVI01021592
[OQVI] human gut metagenome; human gut
490
565
+
Ala
GGC
[ENA]
¢þ
>WENV170057259
CDZG01031340
[CDZG] gut metagenome; human stools
6144
6069
-
Ala
GGC
[ENA]
¢þ
>WENV170075232
CDZT01026645
[CDZT] gut metagenome; human stools
22454
22379
-
Ala
GGC
[ENA]
¢þ
>WENV170075440
CDZT01034430
[CDZT] gut metagenome; human stools
2839
2764
-
Ala
GGC
[ENA]
¢þ
>WENV170635474
JDSF01030498
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
177
252
+
Ala
GGC
[ENA]
¢þ
>WENV170716985
LSQX01019267
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
23901
23826
-
Ala
GGC
[ENA]
¢þ
>WENV170974752
MTKY01073192
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1277
1352
+
Ala
GGC
[ENA]
¢þ
>W09112372
ABXU01000052
Thermodesulfobacteriota
Desulfovibrio piger ATCC 29098 [ABXU]
9721
9646
-
Ala
GGC
[ENA]
¡û
>W09112374
ABXU01000055
Thermodesulfobacteriota
Desulfovibrio piger ATCC 29098 [ABXU]
33560
33635
+
Ala
GGC
[ENA]
¡û
>W09118028
ACCN01000010
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
101761
101686
-
Ala
GGC
[ENA]
¡û
>W09134067
ACQX01000007
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [ACQX]
109612
109687
+
Ala
GGC
[ENA]
¡û
>W09134068
ACQX01000007
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [ACQX]
119764
119839
+
Ala
GGC
[ENA]
¡û
>C09104190
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
968482
968557
+
Ala
GGC
[Ensembl]
¡û
>C11107415
CP002297
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [CP002297]
61847
61922
+
Ala
GGC
[Ensembl]
¡û
>C11107416
CP002297
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [CP002297]
71999
72074
+
Ala
GGC
[Ensembl]
¡û
>W11178828
AGFG01000050
Thermodesulfobacteriota
Desulfovibrio sp. A2 [AGFG]
60558
60633
+
Ala
GGC
[ENA]
¡û
>W11178829
AGFG01000050
Thermodesulfobacteriota
Desulfovibrio sp. A2 [AGFG]
118571
118496
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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