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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.279468 (95 seq.)
>W131231215
AUIH01000006
Gammaproteobacteria
Saccharospirillum impatiens DSM 12546 [AUIH]
86357
86281
-
Asp
GTC
[ENA]
¡û
>W131231216
AUIH01000006
Gammaproteobacteria
Saccharospirillum impatiens DSM 12546 [AUIH]
86213
86137
-
Asp
GTC
[ENA]
¡û
>W131231218
AUIH01000006
Gammaproteobacteria
Saccharospirillum impatiens DSM 12546 [AUIH]
85917
85841
-
Asp
GTC
[ENA]
¡û
>C015894
CP000388
Gammaproteobacteria
Paraglaciecola sp. T6c [CP000388]
2877746
2877670
-
Asp
GTC
[Ensembl]
¡û
>C015895
CP000388
Gammaproteobacteria
Paraglaciecola sp. T6c [CP000388]
2877637
2877561
-
Asp
GTC
[Ensembl]
¡û
>C015896
CP000388
Gammaproteobacteria
Paraglaciecola sp. T6c [CP000388]
2877534
2877458
-
Asp
GTC
[Ensembl]
¡û
>w014083
AAOE01000005
Gammaproteobacteria
Reinekea blandensis MED297 [AAOE]
161952
162030
+
Asp
GTC
[ENA]
¡û
>w014081
AAOE01000005
Gammaproteobacteria
Reinekea blandensis MED297 [AAOE]
161742
161820
+
Asp
GTC
[ENA]
¡û
>w014079
AAOE01000005
Gammaproteobacteria
Reinekea blandensis MED297 [AAOE]
161532
161610
+
Asp
GTC
[ENA]
¡û
>w014078
AAOE01000005
Gammaproteobacteria
Reinekea blandensis MED297 [AAOE]
161296
161374
+
Asp
GTC
[ENA]
¡û
>W141223707
BAEK01000021
Gammaproteobacteria
Paraglaciecola agarilytica NO2 [BAEK]
54430
54506
+
Asp
GTC
[ENA]
¡û
>W141223760
BAEM01000032
Gammaproteobacteria
Paraglaciecola chathamensis S18K6 [BAEM]
236503
236579
+
Asp
GTC
[ENA]
¡û
>W141223761
BAEM01000032
Gammaproteobacteria
Paraglaciecola chathamensis S18K6 [BAEM]
236612
236688
+
Asp
GTC
[ENA]
¡û
>W141223762
BAEM01000032
Gammaproteobacteria
Paraglaciecola chathamensis S18K6 [BAEM]
236714
236790
+
Asp
GTC
[ENA]
¡û
>W141223895
BAEP01000005
Gammaproteobacteria
Paraglaciecola mesophila KMM 241 [BAEP]
77028
76952
-
Asp
GTC
[ENA]
¡û
>W141223896
BAEP01000005
Gammaproteobacteria
Paraglaciecola mesophila KMM 241 [BAEP]
76919
76843
-
Asp
GTC
[ENA]
¡û
>W141223897
BAEP01000005
Gammaproteobacteria
Paraglaciecola mesophila KMM 241 [BAEP]
76817
76741
-
Asp
GTC
[ENA]
¡û
>W141223997
BAER01000044
Gammaproteobacteria
Paraglaciecola polaris LMG 21857 [BAER]
93587
93663
+
Asp
GTC
[ENA]
¡û
>W141223998
BAER01000044
Gammaproteobacteria
Paraglaciecola polaris LMG 21857 [BAER]
93696
93772
+
Asp
GTC
[ENA]
¡û
>W141223999
BAER01000044
Gammaproteobacteria
Paraglaciecola polaris LMG 21857 [BAER]
93799
93875
+
Asp
GTC
[ENA]
¡û
>WENV182541938
OJAV01000037
[OJAV] seawater metagenome; Sea water
45454
45378
-
Asp
GTC
[ENA]
¢þ
>WENV182542318
OJAY01000054
[OJAY] seawater metagenome; Sea water
54470
54546
+
Asp
GTC
[ENA]
¢þ
>WENV182542648
OJAZ01000256
[OJAZ] seawater metagenome; Sea water
28546
28470
-
Asp
GTC
[ENA]
¢þ
>WENV182542649
OJAZ01000256
[OJAZ] seawater metagenome; Sea water
28437
28361
-
Asp
GTC
[ENA]
¢þ
>WENV182543444
OJBB01000188
[OJBB] seawater metagenome; Sea water
6180
6104
-
Asp
GTC
[ENA]
¢þ
>WENV182543711
OJBC01000554
[OJBC] seawater metagenome; Sea water
7142
7066
-
Asp
GTC
[ENA]
¢þ
>WENV182544138
OJBE01002077
[OJBE] seawater metagenome; Sea water
1786
1710
-
Asp
GTC
[ENA]
¢þ
>WENV182546366
OJBO01014024
[OJBO] seawater metagenome; Sea water
127
51
-
Asp
GTC
[ENA]
¢þ
>WENV182547002
OJBR01000119
[OJBR] seawater metagenome; Sea water
82
158
+
Asp
GTC
[ENA]
¢þ
>WENV182548969
OJBX01003594
[OJBX] seawater metagenome; Sea water
505
581
+
Asp
GTC
[ENA]
¢þ
>WENV182549770
OJBZ01000007
[OJBZ] seawater metagenome; Sea water
195592
195516
-
Asp
GTC
[ENA]
¢þ
>WENV182549771
OJBZ01000007
[OJBZ] seawater metagenome; Sea water
195489
195413
-
Asp
GTC
[ENA]
¢þ
>WENV182550875
OJCB01001138
[OJCB] seawater metagenome; Sea water
82
158
+
Asp
GTC
[ENA]
¢þ
>WENV182552383
OJCK01000006
[OJCK] seawater metagenome; Sea water
54414
54490
+
Asp
GTC
[ENA]
¢þ
>WENV182554753
OJCW01007220
[OJCW] seawater metagenome; Sea water
990
1066
+
Asp
GTC
[ENA]
¢þ
>WENV182555171
OJCY01006774
[OJCY] seawater metagenome; Sea water
158
82
-
Asp
GTC
[ENA]
¢þ
>WENV182556745
OJDH01000029
[OJDH] seawater metagenome; Sea water
78850
78774
-
Asp
GTC
[ENA]
¢þ
>WENV182556962
OJDI01000101
[OJDI] seawater metagenome; Sea water
88
164
+
Asp
GTC
[ENA]
¢þ
>WENV182557035
OJDI01000436
[OJDI] seawater metagenome; Sea water
16935
17011
+
Asp
GTC
[ENA]
¢þ
>WENV182558668
OJDN01000350
[OJDN] seawater metagenome; Sea water
16643
16567
-
Asp
GTC
[ENA]
¢þ
>WENV182562158
OJDZ01000005
[OJDZ] seawater metagenome; Sea water
195598
195522
-
Asp
GTC
[ENA]
¢þ
>WENV182562159
OJDZ01000005
[OJDZ] seawater metagenome; Sea water
195489
195413
-
Asp
GTC
[ENA]
¢þ
>WENV182566318
OJEJ01012416
[OJEJ] seawater metagenome; Sea water
158
82
-
Asp
GTC
[ENA]
¢þ
>WENV182571013
OJFG01000042
[OJFG] seawater metagenome; Sea water
54415
54491
+
Asp
GTC
[ENA]
¢þ
>WENV182572150
OJFL01000583
[OJFL] seawater metagenome; Sea water
88
164
+
Asp
GTC
[ENA]
¢þ
>WENV182574274
OJFR01001557
[OJFR] seawater metagenome; Sea water
164
88
-
Asp
GTC
[ENA]
¢þ
>WENV182574521
OJFS01000002
[OJFS] seawater metagenome; Sea water
88
164
+
Asp
GTC
[ENA]
¢þ
>WENV182574591
OJFS01000074
[OJFS] seawater metagenome; Sea water
54415
54491
+
Asp
GTC
[ENA]
¢þ
>WENV182575584
OJFV01000192
[OJFV] seawater metagenome; Sea water
114
190
+
Asp
GTC
[ENA]
¢þ
>WENV182576017
OJFX01001438
[OJFX] seawater metagenome; Sea water
1535
1459
-
Asp
GTC
[ENA]
¢þ
>WENV182576018
OJFX01001438
[OJFX] seawater metagenome; Sea water
1426
1350
-
Asp
GTC
[ENA]
¢þ
>WENV182578417
OJGO01000004
[OJGO] seawater metagenome; Sea water
54416
54492
+
Asp
GTC
[ENA]
¢þ
>WENV182581260
OJGX01001655
[OJGX] seawater metagenome; Sea water
1580
1504
-
Asp
GTC
[ENA]
¢þ
>WENV182582770
OJHC01000041
[OJHC] seawater metagenome; Sea water
67267
67191
-
Asp
GTC
[ENA]
¢þ
>WENV182582771
OJHC01000041
[OJHC] seawater metagenome; Sea water
67158
67082
-
Asp
GTC
[ENA]
¢þ
>WENV182584361
OJHG01000051
[OJHG] seawater metagenome; Sea water
54415
54491
+
Asp
GTC
[ENA]
¢þ
>WENV182585360
OJHH01011300
[OJHH] seawater metagenome; Sea water
1555
1479
-
Asp
GTC
[ENA]
¢þ
>WENV182586148
OJHJ01005222
[OJHJ] seawater metagenome; Sea water
1517
1441
-
Asp
GTC
[ENA]
¢þ
>WENV182586693
OJHK01003075
[OJHK] seawater metagenome; Sea water
73
149
+
Asp
GTC
[ENA]
¢þ
>WENV182591473
OJIO01000147
[OJIO] seawater metagenome; Sea water
82
158
+
Asp
GTC
[ENA]
¢þ
>WENV182591474
OJIO01000153
[OJIO] seawater metagenome; Sea water
54416
54492
+
Asp
GTC
[ENA]
¢þ
>WENV182592375
OJIR01000171
[OJIR] seawater metagenome; Sea water
164
88
-
Asp
GTC
[ENA]
¢þ
>WENV182592474
OJIR01001382
[OJIR] seawater metagenome; Sea water
6491
6415
-
Asp
GTC
[ENA]
¢þ
>WENV183055133
OLGX01000012
[OLGX] seawater metagenome; Sea water
115459
115383
-
Asp
GTC
[ENA]
¢þ
>WENV183057242
OLHL01000002
[OLHL] seawater metagenome; Sea water
135418
135342
-
Asp
GTC
[ENA]
¢þ
>WENV183057875
OLHM01014499
[OLHM] seawater metagenome; Sea water
126
50
-
Asp
GTC
[ENA]
¢þ
>WENV183059700
OLHV01000369
[OLHV] seawater metagenome; Sea water
158
82
-
Asp
GTC
[ENA]
¢þ
>WENV183062409
OLID01008493
[OLID] seawater metagenome; Sea water
179
255
+
Asp
GTC
[ENA]
¢þ
>WENV183522329
OMOM01003686
[OMOM] seawater metagenome; Sea water
1629
1553
-
Asp
GTC
[ENA]
¢þ
>WENV170025267
BCQL01274933
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
366
290
-
Asp
GTC
[ENA]
¢þ
>C181010969
CP011797
Gammaproteobacteria
Reinekea forsetii Hel1_31_D35 [CP011797]
1072108
1072184
+
Asp
GTC
-
¡û
>C181010970
CP011797
Gammaproteobacteria
Reinekea forsetii Hel1_31_D35 [CP011797]
1072580
1072656
+
Asp
GTC
-
¡û
>C181010972
CP011797
Gammaproteobacteria
Reinekea forsetii Hel1_31_D35 [CP011797]
1073150
1073226
+
Asp
GTC
-
¡û
>C181010974
CP011797
Gammaproteobacteria
Reinekea forsetii Hel1_31_D35 [CP011797]
1073601
1073677
+
Asp
GTC
-
¡û
>C191155984
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
2204717
2204793
+
Asp
GTC
-
¡û
>C191156010
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
5331994
5331918
-
Asp
GTC
-
¡û
>C191156014
CP037952
Gammaproteobacteria
Parashewanella spongiae HJ039 [CP037952]
5103624
5103548
-
Asp
GTC
-
¡û
>W09103788
AAKP01000037
Gammaproteobacteria
Pseudoalteromonas atlantica T6c [AAKP] T6c [AAKP]
49399
49323
-
Asp
GTC
[ENA]
¡û
>W09103789
AAKP01000037
Gammaproteobacteria
Pseudoalteromonas atlantica T6c [AAKP] T6c [AAKP]
49290
49214
-
Asp
GTC
[ENA]
¡û
>W09103790
AAKP01000037
Gammaproteobacteria
Pseudoalteromonas atlantica T6c [AAKP] T6c [AAKP]
49187
49111
-
Asp
GTC
[ENA]
¡û
>C09109781
CP000472
Gammaproteobacteria
Shewanella piezotolerans WP3 [CP000472]
79502
79578
+
Asp
GTC
[Ensembl]
¡û
>C09109810
CP000472
Gammaproteobacteria
Shewanella piezotolerans WP3 [CP000472]
2066186
2066262
+
Asp
GTC
[Ensembl]
¡û
>C09109814
CP000472
Gammaproteobacteria
Shewanella piezotolerans WP3 [CP000472]
2399421
2399497
+
Asp
GTC
[Ensembl]
¡û
>W1910796195
MSCH01000003
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
2112632
2112708
+
Asp
GTC
[ENA]
¡û
>W1910796220
MSCH01000003
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
3035009
3034933
-
Asp
GTC
[ENA]
¡û
>W1910796221
MSCH01000003
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
3034860
3034784
-
Asp
GTC
[ENA]
¡û
>W1910796222
MSCH01000003
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
3034703
3034627
-
Asp
GTC
[ENA]
¡û
>W1910796223
MSCH01000003
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
3034192
3034116
-
Asp
GTC
[ENA]
¡û
>W1911809501
QYYH01000111
Gammaproteobacteria
Parashewanella spongiae KCTC 22492 [QYYH]
16272
16196
-
Asp
GTC
[ENA]
¡û
>C11109460
CP002526
Gammaproteobacteria
Glaciecola sp. 4H-3-7+YE-5 4H-3-7+YE-5 [CP002526]
2336556
2336632
+
Asp
GTC
[Ensembl]
¡û
>C11109461
CP002526
Gammaproteobacteria
Glaciecola sp. 4H-3-7+YE-5 4H-3-7+YE-5 [CP002526]
2336665
2336741
+
Asp
GTC
[Ensembl]
¡û
>C11109462
CP002526
Gammaproteobacteria
Glaciecola sp. 4H-3-7+YE-5 4H-3-7+YE-5 [CP002526]
2336768
2336844
+
Asp
GTC
[Ensembl]
¡û
>W1511348323
JRKG01000008
Gammaproteobacteria
Pseudoalteromonas sp. PLSV [JRKG]
102219
102295
+
Asp
GTC
[ENA]
¡û
>W1511348324
JRKG01000008
Gammaproteobacteria
Pseudoalteromonas sp. PLSV [JRKG]
102328
102404
+
Asp
GTC
[ENA]
¡û
>W1511348325
JRKG01000008
Gammaproteobacteria
Pseudoalteromonas sp. PLSV [JRKG]
102431
102507
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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