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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.279474 (31 seq.)
>W1711069387
LSFP01000001
Alphaproteobacteria
Zymomonas mobilis [LSFP]
170296
170372
+
Asp
GTC
[ENA]
¡û
>W1711229605
LXYP01000003
Alphaproteobacteria
Sphingomonadales bacterium EhC05 [LXYP]
176
252
+
Asp
GTC
[ENA]
¡û
>C171115159
CP021053
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-1960 [CP021053]
824785
824709
-
Asp
GTC
-
¡û
>W131046796
AMSR01000004
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 31822 [AMSR]
66810
66886
+
Asp
GTC
[ENA]
¡û
>C027915
AE008692
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [AE008692]
444155
444231
+
Asp
GTC
[Ensembl]
¡û
>WENV170647338
JQIA01021422
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
2526
2450
-
Asp
GTC
[ENA]
¢þ
>WENV170668058
LADL02000596
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
7171
7095
-
Asp
GTC
[ENA]
¢þ
>C181062165
CP022336
Alphaproteobacteria
Sphingorhabdus sp. SMR4y [CP022336]
1185968
1185892
-
Asp
GTC
-
¡û
>C181068268
CP022548
Alphaproteobacteria
Sphingorhabdus sp. YGSMI21 [CP022548]
3560986
3560910
-
Asp
GTC
-
¡û
>C181088851
CP023677
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023677]
446548
446624
+
Asp
GTC
-
¡û
>C181088902
CP023682
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023682]
446548
446624
+
Asp
GTC
-
¡û
>C181089229
CP023715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP023715]
446548
446624
+
Asp
GTC
-
¡û
>C181220323
LT702999
Alphaproteobacteria
Erythrobacter sp. Alg231-14 [LT702999, LT703000]
2743051
2742975
-
Asp
GTC
-
¡û
>C181220342
LT703001
Alphaproteobacteria
Sphingorhabdus sp. Alg231-15 [LT703001, LT703002]
309795
309871
+
Asp
GTC
-
¡û
>C191145576
CP035711
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP035711]
444147
444223
+
Asp
GTC
-
¡û
>C191145627
CP035712
Alphaproteobacteria
Zymomonas mobilis ZM4* [CP035712]
444147
444223
+
Asp
GTC
-
¡û
>C191145678
CP035713
Alphaproteobacteria
Zymomonas mobilis ER79ag [CP035713]
444147
444223
+
Asp
GTC
-
¡û
>W09133943
ACQU01000001
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [ACQU]
179845
179921
+
Asp
GTC
[ENA]
¡û
>W1910182403
BJMW01000003
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NBRC 13756 [BJMW]
24286
24210
-
Asp
GTC
[ENA]
¡û
>C141008816
CP006818
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP006818]
926343
926267
-
Asp
GTC
[Ensembl]
¡û
>W1911532521
OGVD01000004
Alphaproteobacteria
Sphingorhabdus sp. EL138 [OGVD]
684758
684834
+
Asp
GTC
[ENA]
¡û
>W1810503361
QBKA01000002
Alphaproteobacteria
Alteripontixanthobacter maritimus HME9302 [QBKA]
909552
909628
+
Asp
GTC
[ENA]
¡û
>C151004618
CP003709
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-12526 [CP003709]
926115
926039
-
Asp
GTC
[Ensembl]
¡û
>C151004669
CP003715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP003715]
926118
926042
-
Asp
GTC
[Ensembl]
¡û
>C10114602
CP001722
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NCIMB 11163 [CP001722]
924614
924538
-
Asp
GTC
[Ensembl]
¡û
>C121003139
CP002850
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [CP002850]
1148693
1148769
+
Asp
GTC
[Ensembl]
¡û
>C121015276
CP003704
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 29191 [CP003704]
925912
925836
-
Asp
GTC
[Ensembl]
¡û
>C161073953
CP014545
Alphaproteobacteria
Sphingorhabdus sp. M41 [CP014545]
1260994
1261070
+
Asp
GTC
[Ensembl]
¡û
>W1610909915
LSFP01000001
Alphaproteobacteria
Zymomonas mobilis [LSFP]
170296
170372
+
Asp
GTC
[ENA]
¡û
>W1611013475
LXYP01000003
Alphaproteobacteria
Sphingomonadales bacterium EhC05 [LXYP]
176
252
+
Asp
GTC
[ENA]
¡û
>W1710593922
FSQW01000002
Alphaproteobacteria
Parasphingorhabdus marina DSM 22363 [FSQW]
749169
749093
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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