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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.279476 (104 seq.)
>W1711228147
LXWI01000027
Campylobacterota
Helicobacter pullorum [LXWI]
50650
50726
+
Asp
GTC
[ENA]
¡û
>W1711302770
MAJF01000017
Campylobacterota
Helicobacter pullorum [MAJF]
762
686
-
Asp
GTC
[ENA]
¡û
>W1711302804
MAJG01000023
Campylobacterota
Helicobacter pullorum [MAJG]
17799
17875
+
Asp
GTC
[ENA]
¡û
>W1711306325
MANJ01000002
Campylobacterota
Helicobacter pullorum [MANJ]
50515
50591
+
Asp
GTC
[ENA]
¡û
>W1711306377
MANK01000019
Campylobacterota
Helicobacter pullorum [MANK]
50405
50481
+
Asp
GTC
[ENA]
¡û
>W1711307539
MAOZ01000007
Campylobacterota
Helicobacter pullorum [MAOZ]
37902
37978
+
Asp
GTC
[ENA]
¡û
>W1711307570
MAPA01000003
Campylobacterota
Helicobacter pullorum [MAPA]
12109
12033
-
Asp
GTC
[ENA]
¡û
>W1711307608
MAPB01000005
Campylobacterota
Helicobacter pullorum [MAPB]
60881
60805
-
Asp
GTC
[ENA]
¡û
>W1711307658
MAPC01000017
Campylobacterota
Helicobacter pullorum [MAPC]
51321
51397
+
Asp
GTC
[ENA]
¡û
>W1711307693
MAPD01000023
Campylobacterota
Helicobacter pullorum [MAPD]
38394
38318
-
Asp
GTC
[ENA]
¡û
>W1711307724
MAPE01000007
Campylobacterota
Helicobacter pullorum [MAPE]
50720
50796
+
Asp
GTC
[ENA]
¡û
>C010572
AE017125
Campylobacterota
Helicobacter hepaticus ATCC 51449 [AE017125]
891491
891415
-
Asp
GTC
[Ensembl]
¡û
>W08010340
ABQT01000031
Campylobacterota
Helicobacter cinaedi CCUG 18818 [ABQT]
63528
63455
-
Asp
GTC
[ENA]
¡û
>W08010368
ABQU01000047
Campylobacterota
Helicobacter pullorum MIT 98-5489 [ABQU]
4314
4241
-
Asp
GTC
[ENA]
¡û
>WENV181197006
OEQZ01007691
[OEQZ] metagenome; Caecal content
280
356
+
Asp
GTC
[ENA]
¢þ
>WENV181205145
OESA01006553
[OESA] metagenome; Caecal content
170
94
-
Asp
GTC
[ENA]
¢þ
>W141204237
AZJJ01000001
Campylobacterota
Helicobacter canis NCTC 12740 [AZJJ]
233976
234052
+
Asp
GTC
[ENA]
¡û
>W141275706
JADE01000009
Campylobacterota
Helicobacter pametensis ATCC 51478 [JADE]
54562
54486
-
Asp
GTC
[ENA]
¡û
>WENV183074110
OLIU01008568
[OLIU] human gut metagenome; stool sample
1037
961
-
Asp
GTC
[ENA]
¢þ
>WENV170637297
JFBN01315939
[JFBN] chicken gut metagenome; ceca of Broiler chicken
8043
7967
-
Asp
GTC
[ENA]
¢þ
>C181054491
CP021886
Campylobacterota
Helicobacter apodemus SCJK1 [CP021886]
1899223
1899299
+
Asp
GTC
-
¡û
>C181213857
LS483446
Campylobacterota
Helicobacter mustelae NCTC12198 [LS483446]
143608
143684
+
Asp
GTC
-
¡û
>C191000195
AP017374
Campylobacterota
Helicobacter cinaedi MRY08-1234 [AP017374]
221966
222042
+
Asp
GTC
-
¡û
>C191002270
AP018446
Campylobacterota
Helicobacter cinaedi P03D0629 [AP018446]
221966
222042
+
Asp
GTC
-
¡û
>C191002308
AP018447
Campylobacterota
Helicobacter cinaedi P06D0798 [AP018447]
213916
213992
+
Asp
GTC
-
¡û
>C191003901
AP018676
Campylobacterota
Helicobacter cinaedi P01D0000 [AP018676]
214501
214577
+
Asp
GTC
-
¡û
>C191213271
LR134509
Campylobacterota
Helicobacter pullorum NCTC13154 [LR134509]
205361
205285
-
Asp
GTC
-
¡û
>W141558665
JHWC01000003
Campylobacterota
Helicobacter rodentium ATCC 700285 [JHWC]
190000
190076
+
Asp
GTC
[ENA]
¡û
>W1910546123
FZMI01000012
Campylobacterota
Helicobacter cinaedi [FZMI]
60182
60258
+
Asp
GTC
[ENA]
¡û
>W1910546170
FZMJ01000014
Campylobacterota
Helicobacter cinaedi [FZMJ]
38594
38670
+
Asp
GTC
[ENA]
¡û
>W1910546615
FZMV01000020
Campylobacterota
Helicobacter pullorum [FZMV]
5502
5426
-
Asp
GTC
[ENA]
¡û
>W1910546663
FZMX01000005
Campylobacterota
Helicobacter pullorum [FZMX]
58069
57993
-
Asp
GTC
[ENA]
¡û
>W1910549549
FZPI01000003
Campylobacterota
Helicobacter pametensis [FZPI]
60636
60712
+
Asp
GTC
[ENA]
¡û
>W1910549574
FZPJ01000006
Campylobacterota
Helicobacter mesocricetorum [FZPJ]
9860
9784
-
Asp
GTC
[ENA]
¡û
>W1910549641
FZPL01000003
Campylobacterota
Helicobacter pametensis [FZPL]
54255
54179
-
Asp
GTC
[ENA]
¡û
>W1910549794
FZPP01000012
Campylobacterota
Helicobacter marmotae [FZPP]
4784
4860
+
Asp
GTC
[ENA]
¡û
>W1910550322
FZQU01000007
Campylobacterota
Helicobacter sp. 'CLO3_human' [FZQU]
29792
29716
-
Asp
GTC
[ENA]
¡û
>W1910550493
FZQY01000006
Campylobacterota
Helicobacter sp. 'house sparrow 1' [FZQY]
29940
29864
-
Asp
GTC
[ENA]
¡û
>W1910584341
JXTX01000009
Campylobacterota
Helicobacter pullorum 2013BJHL [JXTX]
16544
16468
-
Asp
GTC
[ENA]
¡û
>W1910756072
MLAM01000010
Campylobacterota
Helicobacter sp. 11S02596-1 [MLAM]
15396
15320
-
Asp
GTC
[ENA]
¡û
>W1910756184
MLAP01000010
Campylobacterota
Helicobacter sp. 12S02634-8 [MLAP]
6407
6483
+
Asp
GTC
[ENA]
¡û
>W1910756216
MLAQ01000009
Campylobacterota
Helicobacter sp. 12S02232-10 [MLAQ]
11284
11208
-
Asp
GTC
[ENA]
¡û
>W1910756285
MLAS01000014
Campylobacterota
Helicobacter sp. 13S00477-4 [MLAS]
26011
26087
+
Asp
GTC
[ENA]
¡û
>W1910756323
MLAT01000019
Campylobacterota
Helicobacter sp. 13S00482-2 [MLAT]
464
388
-
Asp
GTC
[ENA]
¡û
>W1810002669
BEYY01000169
Campylobacterota
Helicobacter cinaedi P04D0736 [BEYY]
60285
60361
+
Asp
GTC
[ENA]
¡û
>W1810002700
BEYZ01000107
Campylobacterota
Helicobacter cinaedi P05D0741 [BEYZ]
8500
8576
+
Asp
GTC
[ENA]
¡û
>W1810002729
BEZB01000008
Campylobacterota
Helicobacter cinaedi P07D0876 [BEZB]
63649
63573
-
Asp
GTC
[ENA]
¡û
>W1810002769
BEZC01000064
Campylobacterota
Helicobacter cinaedi P08D0905 [BEZC]
5206
5130
-
Asp
GTC
[ENA]
¡û
>W1810002815
BEZD01000151
Campylobacterota
Helicobacter cinaedi P09D0927 [BEZD]
60280
60356
+
Asp
GTC
[ENA]
¡û
>W1810002836
BEZE01000029
Campylobacterota
Helicobacter cinaedi P10D0937 [BEZE]
37609
37685
+
Asp
GTC
[ENA]
¡û
>W1810002880
BEZF01000141
Campylobacterota
Helicobacter cinaedi P11D0946 [BEZF]
60295
60371
+
Asp
GTC
[ENA]
¡û
>W1810002928
BEZG01000154
Campylobacterota
Helicobacter cinaedi P13D0979 [BEZG]
8474
8550
+
Asp
GTC
[ENA]
¡û
>W1810002976
BEZH01000137
Campylobacterota
Helicobacter cinaedi P14D1067 [BEZH]
25504
25428
-
Asp
GTC
[ENA]
¡û
>W1810002986
BEZI01000137
Campylobacterota
Helicobacter cinaedi P17D1144 [BEZI]
60263
60339
+
Asp
GTC
[ENA]
¡û
>W1810003034
BEZJ01000131
Campylobacterota
Helicobacter cinaedi P18D1268 [BEZJ]
13646
13570
-
Asp
GTC
[ENA]
¡û
>W1810003070
BEZK01000124
Campylobacterota
Helicobacter cinaedi P19D1315 [BEZK]
58982
59058
+
Asp
GTC
[ENA]
¡û
>W1810003098
BEZL01000088
Campylobacterota
Helicobacter cinaedi P20D1835 [BEZL]
8463
8539
+
Asp
GTC
[ENA]
¡û
>W1810003150
BEZM01000200
Campylobacterota
Helicobacter cinaedi CCUG18818 [BEZM]
40353
40277
-
Asp
GTC
[ENA]
¡û
>W1810003175
BEZN01000123
Campylobacterota
Helicobacter cinaedi P21D1863 [BEZN]
60271
60347
+
Asp
GTC
[ENA]
¡û
>W1810003197
BEZO01000024
Campylobacterota
Helicobacter cinaedi P02D0213 [BEZO]
8462
8538
+
Asp
GTC
[ENA]
¡û
>W1810003233
BEZP01000065
Campylobacterota
Helicobacter cinaedi P15D1072 [BEZP]
8463
8539
+
Asp
GTC
[ENA]
¡û
>W1810003272
BEZQ01000072
Campylobacterota
Helicobacter cinaedi P16D1106 [BEZQ]
8463
8539
+
Asp
GTC
[ENA]
¡û
>W1810003305
BEZR01000009
Campylobacterota
Helicobacter cinaedi P12D0946 [BEZR]
63696
63620
-
Asp
GTC
[ENA]
¡û
>W1810003341
BEZS01000009
Campylobacterota
Helicobacter cinaedi P11D1015 [BEZS]
63698
63622
-
Asp
GTC
[ENA]
¡û
>W1810010709
BGKD01000202
Campylobacterota
Helicobacter cinaedi CCUG19503 [BGKD]
60291
60367
+
Asp
GTC
[ENA]
¡û
>W1810010739
BGKE01000151
Campylobacterota
Helicobacter cinaedi CCUG19504 [BGKE]
8298
8374
+
Asp
GTC
[ENA]
¡û
>W1810010772
BGKF01000101
Campylobacterota
Helicobacter cinaedi PAGU617 [BGKF]
8460
8536
+
Asp
GTC
[ENA]
¡û
>W1810010792
BGKG01000050
Campylobacterota
Helicobacter cinaedi PAGU1382 [BGKG]
8482
8558
+
Asp
GTC
[ENA]
¡û
>W1810010827
BGKH01000039
Campylobacterota
Helicobacter cinaedi PAGU628 [BGKH]
40369
40293
-
Asp
GTC
[ENA]
¡û
>W1810046605
NXLR01000009
Campylobacterota
Helicobacter marmotae MIT 98-6070 [NXLR]
37077
37153
+
Asp
GTC
[ENA]
¡û
>W1810046638
NXLS01000007
Campylobacterota
Helicobacter ganmani MIT 99-5101 [NXLS]
14601
14525
-
Asp
GTC
[ENA]
¡û
>W1810046814
NXLX01000009
Campylobacterota
Helicobacter anseris MIT 04-9362 [NXLX]
27474
27550
+
Asp
GTC
[ENA]
¡û
>C10107575
FN555004
Campylobacterota
Helicobacter mustelae 12198 [FN555004]
144807
144883
+
Asp
GTC
[Ensembl]
¡û
>W1511350770
JRMQ01000001
Campylobacterota
Helicobacter japonicus MIT 01-6451 [JRMQ]
681401
681325
-
Asp
GTC
[ENA]
¡û
>W1511350843
JRMS01000004
Campylobacterota
Helicobacter sp. MIT 03-1614 [JRMS]
13166
13090
-
Asp
GTC
[ENA]
¡û
>W1511353093
JROY01000006
Campylobacterota
Helicobacter sp. MIT 03-1616 [JROY]
15516
15592
+
Asp
GTC
[ENA]
¡û
>W1511353137
JROZ01000001
Campylobacterota
Helicobacter sp. MIT 05-5293 [JROZ]
184934
185010
+
Asp
GTC
[ENA]
¡û
>W1511353158
JROZ01000003
Campylobacterota
Helicobacter sp. MIT 05-5293 [JROZ]
16872
16948
+
Asp
GTC
[ENA]
¡û
>W1511353269
JRPC01000141
Campylobacterota
Helicobacter apodemus MIT-03-7007 [JRPC]
2161
2085
-
Asp
GTC
[ENA]
¡û
>W1511353326
JRPE01000051
Campylobacterota
Helicobacter magdeburgensis MIT 96-1001 [JRPE]
6540
6616
+
Asp
GTC
[ENA]
¡û
>W1511353385
JRPF01000006
Campylobacterota
Helicobacter typhlonius MIT 98-6810 [JRPF]
28132
28208
+
Asp
GTC
[ENA]
¡û
>C121001344
AP012344
Campylobacterota
Helicobacter cinaedi PAGU611 [AP012344]
221859
221935
+
Asp
GTC
[Ensembl]
¡û
>C161097574
CP016503
Campylobacterota
Helicobacter enhydrae MIT 01-6242 [CP016503]
709383
709459
+
Asp
GTC
[Ensembl]
¡û
>C161108069
LN907858
Campylobacterota
Helicobacter typhlonius [LN907858]
231372
231296
-
Asp
GTC
[Ensembl]
¡û
>C131000534
AP012492
Campylobacterota
Helicobacter cinaedi CCUG 18818 = ATCC BAA-847 [AP012492]
214505
214581
+
Asp
GTC
[Ensembl]
¡û
>W1610522075
JNOA01000041
Campylobacterota
Helicobacter pullorum [JNOA]
5133
5057
-
Asp
GTC
[ENA]
¡û
>W1610522112
JNOB01000024
Campylobacterota
Helicobacter pullorum [JNOB]
2311
2235
-
Asp
GTC
[ENA]
¡û
>W1610522145
JNOC01000035
Campylobacterota
Helicobacter pullorum [JNOC]
133129
133053
-
Asp
GTC
[ENA]
¡û
>W1610522231
JNUR01000018
Campylobacterota
Helicobacter pullorum [JNUR]
87686
87610
-
Asp
GTC
[ENA]
¡û
>W1611012064
LXWI01000027
Campylobacterota
Helicobacter pullorum [LXWI]
50650
50726
+
Asp
GTC
[ENA]
¡û
>W1611053095
MAJF01000017
Campylobacterota
Helicobacter pullorum [MAJF]
762
686
-
Asp
GTC
[ENA]
¡û
>W1611053129
MAJG01000023
Campylobacterota
Helicobacter pullorum [MAJG]
17799
17875
+
Asp
GTC
[ENA]
¡û
>W1611055679
MANJ01000002
Campylobacterota
Helicobacter pullorum [MANJ]
50515
50591
+
Asp
GTC
[ENA]
¡û
>W1611055731
MANK01000019
Campylobacterota
Helicobacter pullorum [MANK]
50405
50481
+
Asp
GTC
[ENA]
¡û
>W1611055822
MAOZ01000007
Campylobacterota
Helicobacter pullorum [MAOZ]
37902
37978
+
Asp
GTC
[ENA]
¡û
>W1611055853
MAPA01000003
Campylobacterota
Helicobacter pullorum [MAPA]
12109
12033
-
Asp
GTC
[ENA]
¡û
>W1611055891
MAPB01000005
Campylobacterota
Helicobacter pullorum [MAPB]
60881
60805
-
Asp
GTC
[ENA]
¡û
>W1611055941
MAPC01000017
Campylobacterota
Helicobacter pullorum [MAPC]
51321
51397
+
Asp
GTC
[ENA]
¡û
>W1611055976
MAPD01000023
Campylobacterota
Helicobacter pullorum [MAPD]
38394
38318
-
Asp
GTC
[ENA]
¡û
>W1611056007
MAPE01000007
Campylobacterota
Helicobacter pullorum [MAPE]
50720
50796
+
Asp
GTC
[ENA]
¡û
>W1710622001
JNOA01000041
Campylobacterota
Helicobacter pullorum [JNOA]
5133
5057
-
Asp
GTC
[ENA]
¡û
>W1710622038
JNOB01000024
Campylobacterota
Helicobacter pullorum [JNOB]
2311
2235
-
Asp
GTC
[ENA]
¡û
>W1710622071
JNOC01000035
Campylobacterota
Helicobacter pullorum [JNOC]
133129
133053
-
Asp
GTC
[ENA]
¡û
>W1710622157
JNUR01000018
Campylobacterota
Helicobacter pullorum [JNUR]
87686
87610
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK