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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.279555 (19 seq.)
>C171071588
CP018024
Gammaproteobacteria
Alteromonas mediterranea CP48 [CP018024]
1548515
1548439
-
Met
CAT
-
¡û
>C171071650
CP018026
Gammaproteobacteria
Alteromonas mediterranea AR43 [CP018026]
1527227
1527151
-
Met
CAT
-
¡û
>C171071704
CP018027
Gammaproteobacteria
Alteromonas mediterranea CP49 [CP018027]
1549469
1549393
-
Met
CAT
-
¡û
>C171071777
CP018029
Gammaproteobacteria
Alteromonas mediterranea RG65 [CP018029]
1538020
1537944
-
Met
CAT
-
¡û
>WENV180112882
OAPP01156274
[OAPP] marine metagenome; Surface water
26
102
+
Met
CAT
[ENA]
¢þ
>WENV180689092
OCZA010520324
[OCZA] marine metagenome; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
107
183
+
Met
CAT
[ENA]
¢þ
>WENV170586386
FUFK010404523
[FUFK] metagenome; unknown
775
699
-
Met
CAT
[ENA]
¢þ
>C191073121
CP031010
Gammaproteobacteria
Alteromonas sp. RKMC-009 [CP031010]
2968590
2968666
+
Met
CAT
-
¡û
>C191152375
CP036536
Gammaproteobacteria
Salinimonas lutimaris DPSR-4 [CP036536]
2654652
2654728
+
Met
CAT
-
¡û
>C191152379
CP036536
Gammaproteobacteria
Salinimonas lutimaris DPSR-4 [CP036536]
2655082
2655158
+
Met
CAT
-
¡û
>C191152382
CP036536
Gammaproteobacteria
Salinimonas lutimaris DPSR-4 [CP036536]
2655391
2655467
+
Met
CAT
-
¡û
>C191187462
CP041169
Gammaproteobacteria
Alteromonas mediterranea PT11 [CP041169]
1475330
1475254
-
Met
CAT
-
¡û
>C191187527
CP041170
Gammaproteobacteria
Alteromonas mediterranea PT15 [CP041170]
1458877
1458801
-
Met
CAT
-
¡û
>C161062148
CP013928
Gammaproteobacteria
Alteromonas mediterranea UM8 [CP013928]
1710559
1710483
-
Met
CAT
-
¡û
>C161062207
CP013930
Gammaproteobacteria
Alteromonas mediterranea U10 [CP013930]
1718755
1718679
-
Met
CAT
-
¡û
>C131009788
CP003917
Gammaproteobacteria
Alteromonas mediterranea DE1 AltDE1 [CP003917]
1727665
1727589
-
Met
CAT
[Ensembl]
¡û
>C131014182
CP004846
Gammaproteobacteria
Alteromonas mediterranea 615 English Channel 615 [CP004846]
1554791
1554715
-
Met
CAT
[Ensembl]
¡û
>C131014351
CP004851
Gammaproteobacteria
Alteromonas mediterranea U7 [CP004851]
1648526
1648450
-
Met
CAT
[Ensembl]
¡û
>C131014468
CP004853
Gammaproteobacteria
Alteromonas mediterranea UM7 [CP004853]
1714229
1714153
-
Met
CAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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