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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.279706 (125 seq.)
>C000783
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
56089
56165
+
Ile
GAT
[Ensembl]
¡û
>C000820
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4452698
4452622
-
Ile
GAT
[Ensembl]
¡û
>C000840
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4445344
4445268
-
Ile
GAT
[Ensembl]
¡û
>C000860
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4436750
4436674
-
Ile
GAT
[Ensembl]
¡û
>C000878
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4429399
4429323
-
Ile
GAT
[Ensembl]
¡û
>w010481
AAKU01000263
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
830
757
-
Ile
GAT
[ENA]
¡û
>w010477
AAKU01000254
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
515
442
-
Ile
GAT
[ENA]
¡û
>w010466
AAKU01000216
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
510
586
+
Ile
GAT
[ENA]
¡û
>w010454
AAKU01000209
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
2242
2318
+
Ile
GAT
[ENA]
¡û
>w010434
AAKU01000148
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
6150
6226
+
Ile
GAT
[ENA]
¡û
>w010389
AAKU01000002
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
2242
2318
+
Ile
GAT
[ENA]
¡û
>WENV180131316
OATG01007935
[OATG] human gut metagenome; faeces
312
385
+
Ile
GAT
[ENA]
¢þ
>WENV180164912
OAVJ01044408
[OAVJ] human gut metagenome; faeces
148
221
+
Ile
GAT
[ENA]
¢þ
>WENV180218464
OBAR01057858
[OBAR] human gut metagenome; human gut
475
399
-
Ile
GAT
[ENA]
¢þ
>WENV180243184
OBDJ01004303
[OBDJ] human gut metagenome; human gut
444
517
+
Ile
GAT
[ENA]
¢þ
>WENV180281388
OBIA01010390
[OBIA] human gut metagenome; human gut
1493
1420
-
Ile
GAT
[ENA]
¢þ
>WENV180337414
OBLG01038258
[OBLG] human gut metagenome; human gut
911
838
-
Ile
GAT
[ENA]
¢þ
>WENV180337446
OBLG01042290
[OBLG] human gut metagenome; human gut
741
665
-
Ile
GAT
[ENA]
¢þ
>WENV180401136
OBRJ01001988
[OBRJ] human gut metagenome; ENVO:feces
2260
2185
-
Ile
GAT
[ENA]
¢þ
>WENV180442002
OBWW01005328
[OBWW] human gut metagenome; faeces
2575
2502
-
Ile
GAT
[ENA]
¢þ
>WENV180469897
OBYM01024665
[OBYM] human gut metagenome; faeces
758
682
-
Ile
GAT
[ENA]
¢þ
>WENV180509497
OCAV01027307
[OCAV] human gut metagenome; faeces
313
386
+
Ile
GAT
[ENA]
¢þ
>WENV180531381
OCHK01061105
[OCHK] human gut metagenome; human gut
475
399
-
Ile
GAT
[ENA]
¢þ
>WENV180539551
OCHP01044030
[OCHP] human gut metagenome; human gut
470
394
-
Ile
GAT
[ENA]
¢þ
>WENV180564032
OCLD01014929
[OCLD] human gut metagenome; human gut
381
457
+
Ile
GAT
[ENA]
¢þ
>WENV180620135
OCQB01032140
[OCQB] human gut metagenome; human gut
987
914
-
Ile
GAT
[ENA]
¢þ
>WENV180631729
OCQY01051682
[OCQY] human gut metagenome; human gut
528
452
-
Ile
GAT
[ENA]
¢þ
>WENV180681955
OCVV012817067
[OCVV] gut metagenome; gut
207
134
-
Ile
GAT
[ENA]
¢þ
>WENV180681957
OCVV012817067
[OCVV] gut metagenome; gut
207
134
-
Ile
GAT
[ENA]
¢þ
>WENV180748121
ODHN01058713
[ODHN] human metagenome; G_DNA_Stool
240
165
-
Ile
GAT
[ENA]
¢þ
>WENV180785857
ODIR01039952
[ODIR] human metagenome; G_DNA_Stool
136
209
+
Ile
GAT
[ENA]
¢þ
>WENV180786165
ODIR01104069
[ODIR] human metagenome; G_DNA_Stool
313
386
+
Ile
GAT
[ENA]
¢þ
>WENV180828542
ODKA01012575
[ODKA] human metagenome; G_DNA_Stool
256
332
+
Ile
GAT
[ENA]
¢þ
>WENV181311306
OFJB01000702
[OFJB] sludge metagenome; sludge
7223
7147
-
Ile
GAT
[ENA]
¢þ
>WENV181343689
OFMJ01006788
[OFMJ] human gut metagenome; human gut
2507
2431
-
Ile
GAT
[ENA]
¢þ
>WENV181421500
OGCN01068649
[OGCN] human gut metagenome; human gut
240
165
-
Ile
GAT
[ENA]
¢þ
>WENV181442202
OGDN01085575
[OGDN] human gut metagenome; human gut
401
476
+
Ile
GAT
[ENA]
¢þ
>WENV181481693
OGFI01027035
[OGFI] metagenome; Human gut stool
402
477
+
Ile
GAT
[ENA]
¢þ
>WENV181563425
OGJG01036184
[OGJG] metagenome; Human gut stool
402
477
+
Ile
GAT
[ENA]
¢þ
>WENV181575828
OGJU01033295
[OGJU] metagenome; Human gut stool
408
483
+
Ile
GAT
[ENA]
¢þ
>WENV181581766
OGKA01063291
[OGKA] metagenome; Human gut stool
395
470
+
Ile
GAT
[ENA]
¢þ
>WENV181627881
OGMN01013501
[OGMN] metagenome; Human gut stool
863
788
-
Ile
GAT
[ENA]
¢þ
>WENV181693559
OGPA01014416
[OGPA] human gut metagenome; faeces
2153
2080
-
Ile
GAT
[ENA]
¢þ
>WENV181895634
OGXR01017983
[OGXR] human gut metagenome; faeces
256
332
+
Ile
GAT
[ENA]
¢þ
>WENV181928115
OGYN01083479
[OGYN] human gut metagenome; faeces
401
476
+
Ile
GAT
[ENA]
¢þ
>WENV181994574
OHAS01082990
[OHAS] human gut metagenome; faeces
389
464
+
Ile
GAT
[ENA]
¢þ
>WENV182000402
OHAX01032575
[OHAX] human gut metagenome; faeces
401
476
+
Ile
GAT
[ENA]
¢þ
>WENV182004298
OHBD01034678
[OHBD] human gut metagenome; feces
258
334
+
Ile
GAT
[ENA]
¢þ
>WENV182028861
OHCP01019643
[OHCP] human gut metagenome; feces
239
315
+
Ile
GAT
[ENA]
¢þ
>WENV182047155
OHDW01018497
[OHDW] human gut metagenome; feces
866
791
-
Ile
GAT
[ENA]
¢þ
>WENV182087769
OHGW01029780
[OHGW] human gut metagenome; feces
261
337
+
Ile
GAT
[ENA]
¢þ
>WENV182091247
OHHD01013047
[OHHD] human gut metagenome; feces
625
552
-
Ile
GAT
[ENA]
¢þ
>WENV182177112
OHNJ01014661
[OHNJ] human gut metagenome; feces
812
736
-
Ile
GAT
[ENA]
¢þ
>WENV182183073
OHNU01000064
[OHNU] human gut metagenome; feces
1082
1006
-
Ile
GAT
[ENA]
¢þ
>WENV182192680
OHOZ01035002
[OHOZ] human gut metagenome; feces
476
400
-
Ile
GAT
[ENA]
¢þ
>WENV182236336
OHRU01007387
[OHRU] human gut metagenome; feces
260
336
+
Ile
GAT
[ENA]
¢þ
>WENV182294370
OHWD01016455
[OHWD] human gut metagenome; feces
533
458
-
Ile
GAT
[ENA]
¢þ
>WENV182398839
OIEN01011642
[OIEN] human gut metagenome; human gut
1937
1861
-
Ile
GAT
[ENA]
¢þ
>WENV182413629
OIFY01003989
[OIFY] human gut metagenome; human gut
811
736
-
Ile
GAT
[ENA]
¢þ
>WENV182503499
OIUO01012266
[OIUO] human gut metagenome; human gut
310
386
+
Ile
GAT
[ENA]
¢þ
>WENV182615151
OJKC01001492
[OJKC] metagenome; faeces
441
517
+
Ile
GAT
[ENA]
¢þ
>WENV182620373
OJKI01003675
[OJKI] metagenome; faeces
898
974
+
Ile
GAT
[ENA]
¢þ
>WENV182626572
OJKP01015144
[OJKP] metagenome; faeces
115
40
-
Ile
GAT
[ENA]
¢þ
>WENV182628605
OJKQ01019452
[OJKQ] metagenome; faeces
710
634
-
Ile
GAT
[ENA]
¢þ
>WENV182632176
OJKW01048336
[OJKW] metagenome; faeces
453
529
+
Ile
GAT
[ENA]
¢þ
>WENV182635423
OJKY01073316
[OJKY] metagenome; faeces
460
535
+
Ile
GAT
[ENA]
¢þ
>WENV182635847
OJKY01137550
[OJKY] metagenome; faeces
105
181
+
Ile
GAT
[ENA]
¢þ
>WENV182639959
OJLA01159118
[OJLA] metagenome; faeces
141
217
+
Ile
GAT
[ENA]
¢þ
>WENV182697707
OJOL01022535
[OJOL] human gut metagenome; human gut
851
778
-
Ile
GAT
[ENA]
¢þ
>WENV182750834
OJQZ01006210
[OJQZ] human gut metagenome; stool sample
404
480
+
Ile
GAT
[ENA]
¢þ
>WENV182766632
OJRT01037231
[OJRT] human gut metagenome; stool sample
159
84
-
Ile
GAT
[ENA]
¢þ
>WENV182867521
OKRR01046559
[OKRR] human gut metagenome; faeces
389
464
+
Ile
GAT
[ENA]
¢þ
>WENV182893048
OKSI01035440
[OKSI] human gut metagenome; feces
261
337
+
Ile
GAT
[ENA]
¢þ
>WENV182919506
OKTX01020384
[OKTX] human gut metagenome; feces
869
793
-
Ile
GAT
[ENA]
¢þ
>WENV182943185
OKVH01037625
[OKVH] human gut metagenome; human gut
469
393
-
Ile
GAT
[ENA]
¢þ
>WENV182946231
OKVK01010969
[OKVK] human gut metagenome; human gut
280
356
+
Ile
GAT
[ENA]
¢þ
>WENV183025629
OLFT01033859
[OLFT] human gut metagenome; faeces
400
475
+
Ile
GAT
[ENA]
¢þ
>WENV183068377
OLIQ01006723
[OLIQ] metagenome; faeces
2224
2148
-
Ile
GAT
[ENA]
¢þ
>WENV183099401
OLNF01007207
[OLNF] human gut metagenome; faeces
521
597
+
Ile
GAT
[ENA]
¢þ
>WENV183228937
OLQR01015164
[OLQR] human gut metagenome; faeces
483
410
-
Ile
GAT
[ENA]
¢þ
>WENV183231300
OLQT01080950
[OLQT] human gut metagenome; faeces
451
378
-
Ile
GAT
[ENA]
¢þ
>WENV183246039
OLRE01046537
[OLRE] human gut metagenome; faeces
313
386
+
Ile
GAT
[ENA]
¢þ
>WENV183255139
OLRJ01070664
[OLRJ] human gut metagenome; faeces
458
385
-
Ile
GAT
[ENA]
¢þ
>WENV183275860
OLRZ01000548
[OLRZ] human gut metagenome; faeces
261
337
+
Ile
GAT
[ENA]
¢þ
>WENV183331285
OLWB01089335
[OLWB] human gut metagenome; faeces
401
476
+
Ile
GAT
[ENA]
¢þ
>WENV183444702
OMCO01029484
[OMCO] human gut metagenome; feces
469
393
-
Ile
GAT
[ENA]
¢þ
>WENV183445424
OMCP01018242
[OMCP] human gut metagenome; feces
788
712
-
Ile
GAT
[ENA]
¢þ
>WENV183468712
OMEH01003953
[OMEH] human gut metagenome; feces
2349
2425
+
Ile
GAT
[ENA]
¢þ
>WENV183494832
OMGK01016881
[OMGK] human gut metagenome; human gut
970
895
-
Ile
GAT
[ENA]
¢þ
>WENV183547506
OOAU01035511
[OOAU] human gut metagenome; human gut
312
385
+
Ile
GAT
[ENA]
¢þ
>WENV183569102
OOCB01015434
[OOCB] human gut metagenome; human gut
596
671
+
Ile
GAT
[ENA]
¢þ
>WENV183577165
OOCJ01018953
[OOCJ] human gut metagenome; human gut
932
859
-
Ile
GAT
[ENA]
¢þ
>WENV183583412
OOCP01026420
[OOCP] human gut metagenome; human gut
925
852
-
Ile
GAT
[ENA]
¢þ
>WENV183613866
OODU01015048
[OODU] human gut metagenome; human gut
2282
2207
-
Ile
GAT
[ENA]
¢þ
>WENV183769568
PPYE01419001
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
304
379
+
Ile
GAT
[ENA]
¢þ
>WENV170046353
CDYY01033344
[CDYY] gut metagenome; human stools
748
672
-
Ile
GAT
[ENA]
¢þ
>WENV170056596
CDZG01007953
[CDZG] gut metagenome; human stools
241
317
+
Ile
GAT
[ENA]
¢þ
>WENV170561209
CZCA01004443
[CZCA] anaerobic digester metagenome; anaerobic digester
378
454
+
Ile
GAT
[ENA]
¢þ
>WENV170675483
LCWZ01090315
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
12
88
+
Ile
GAT
[ENA]
¢þ
>WENV170687257
LFRM01185350
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1041
965
-
Ile
GAT
[ENA]
¢þ
>WENV170722763
LSQX01242205
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1148
1224
+
Ile
GAT
[ENA]
¢þ
>WENV170967430
MTKW01001387
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
8591
8515
-
Ile
GAT
[ENA]
¢þ
>C181227032
LT907978
Bacillota
Anaerobutyricum hallii [LT907978]
168387
168460
+
Ile
GAT
-
¡û
>C181227040
LT907978
Bacillota
Anaerobutyricum hallii [LT907978]
741228
741301
+
Ile
GAT
-
¡û
>W141558603
JHWB01000013
Bacillota
Lachnobacterium bovis [JHWB]
413
486
+
Ile
GAT
[ENA]
¡û
>W141558613
JHWB01000013
Bacillota
Lachnobacterium bovis [JHWB]
142122
142195
+
Ile
GAT
[ENA]
¡û
>W141558632
JHWB01000013
Bacillota
Lachnobacterium bovis [JHWB]
605884
605957
+
Ile
GAT
[ENA]
¡û
>W141558655
JHWB01000022
Bacillota
Lachnobacterium bovis [JHWB]
121008
121081
+
Ile
GAT
[ENA]
¡û
>W1910128517
BHVZ01000001
Bacillota
Anaerotignum faecicola KCTC 15736 [BHVZ]
1163267
1163342
+
Ile
GAT
[ENA]
¡û
>W1910128541
BHVZ01000002
Bacillota
Anaerotignum faecicola KCTC 15736 [BHVZ]
338556
338481
-
Ile
GAT
[ENA]
¡û
>W1910128552
BHVZ01000007
Bacillota
Anaerotignum faecicola KCTC 15736 [BHVZ]
3715
3640
-
Ile
GAT
[ENA]
¡û
>W1910128570
BHVZ01000009
Bacillota
Anaerotignum faecicola KCTC 15736 [BHVZ]
43737
43812
+
Ile
GAT
[ENA]
¡û
>W1910128573
BHVZ01000014
Bacillota
Anaerotignum faecicola KCTC 15736 [BHVZ]
1521
1596
+
Ile
GAT
[ENA]
¡û
>W1810700912
QMDO01000001
Bacillota
Vallitalea guaymasensis L81 [QMDO]
2659129
2659205
+
Ile
GAT
[ENA]
¡û
>W1810700927
QMDO01000001
Bacillota
Vallitalea guaymasensis L81 [QMDO]
3506453
3506529
+
Ile
GAT
[ENA]
¡û
>W1810798689
QRNJ01000192
Bacillota
Anaerobutyricum hallii AF45-14BH [QRNJ]
358
285
-
Ile
GAT
[ENA]
¡û
>W1810831313
QSOE01000373
Bacillota
Anaerobutyricum hallii TM10-1AC [QSOE]
112
185
+
Ile
GAT
[ENA]
¡û
>W1810876136
QUGL01000030
Bacillota
Firmicutes bacterium AF19-2LB [QUGL]
443
518
+
Ile
GAT
[ENA]
¡û
>W1810879786
QUJC01000032
Bacillota
Firmicutes bacterium AM29-6AC [QUJC]
386
461
+
Ile
GAT
[ENA]
¡û
>W1511578200
LARA01000176
Bacillota
Clostridium sp. A254.MGS-251 [LARA]
187
260
+
Ile
GAT
[ENA]
¡û
>W1511578219
LARA01000203
Bacillota
Clostridium sp. A254.MGS-251 [LARA]
20
93
+
Ile
GAT
[ENA]
¡û
>W1610098882
CYYC01000009
Bacillota
Anaerobutyricum hallii [CYYC]
246
173
-
Ile
GAT
[ENA]
¡û
>WENV079035
AAQL01011552
Gut microbiome of Human (healthy human stool sample 8)
475
399
-
Ile
GAT
[ENA]
>W1710101637
CYYC01000009
Bacillota
Anaerobutyricum hallii [CYYC]
246
173
-
Ile
GAT
[ENA]
¡û
>W1710520440
FNFP01000002
Bacillota
Natronincola ferrireducens [FNFP]
540826
540750
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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