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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.279824 (81 seq.)
>W1711361364
MDLD01000047
Gammaproteobacteria
Endozoicomonas sp. (ex Bugula neritina AB1) [MDLD]
374
299
-
Glu
TTC
[ENA]
¡û
>W1711361366
MDLD01000047
Gammaproteobacteria
Endozoicomonas sp. (ex Bugula neritina AB1) [MDLD]
72
-1
-
Glu
TTC
[ENA]
¡û
>W1711361371
MDLD01000110
Gammaproteobacteria
Endozoicomonas sp. (ex Bugula neritina AB1) [MDLD]
7608
7683
+
Glu
TTC
[ENA]
¡û
>W131231230
AUIH01000026
Gammaproteobacteria
Saccharospirillum impatiens DSM 12546 [AUIH]
17677
17602
-
Glu
TTC
[ENA]
¡û
>W131231233
AUIH01000028
Gammaproteobacteria
Saccharospirillum impatiens DSM 12546 [AUIH]
3707
3782
+
Glu
TTC
[ENA]
¡û
>W131231243
AUIH01000078
Gammaproteobacteria
Saccharospirillum impatiens DSM 12546 [AUIH]
3707
3782
+
Glu
TTC
[ENA]
¡û
>w014087
AAOE01000010
Gammaproteobacteria
Reinekea blandensis MED297 [AAOE]
23157
23080
-
Glu
TTC
[ENA]
¡û
>w014086
AAOE01000010
Gammaproteobacteria
Reinekea blandensis MED297 [AAOE]
23258
23181
-
Glu
TTC
[ENA]
¡û
>w014084
AAOE01000010
Gammaproteobacteria
Reinekea blandensis MED297 [AAOE]
5949
6026
+
Glu
TTC
[ENA]
¡û
>WENV183715574
PDWI01248222
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1066
991
-
Glu
TTC
[ENA]
¢þ
>WENV183718392
PDWJ01003742
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
4465
4540
+
Glu
TTC
[ENA]
¢þ
>WENV183719782
PDWJ01020220
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2086
2161
+
Glu
TTC
[ENA]
¢þ
>WENV170959420
MKWU01004941
[MKWU] sponge metagenome;
7034
7109
+
Glu
TTC
[ENA]
¢þ
>C181010978
CP011797
Gammaproteobacteria
Reinekea forsetii Hel1_31_D35 [CP011797]
1258726
1258801
+
Glu
TTC
-
¡û
>C181010982
CP011797
Gammaproteobacteria
Reinekea forsetii Hel1_31_D35 [CP011797]
2347269
2347344
+
Glu
TTC
-
¡û
>W141775950
JOKG01000003
Gammaproteobacteria
Endozoicomonas montiporae [JOKG]
436330
436405
+
Glu
TTC
[ENA]
¡û
>W141775952
JOKG01000003
Gammaproteobacteria
Endozoicomonas montiporae [JOKG]
436685
436760
+
Glu
TTC
[ENA]
¡û
>W141775954
JOKG01000003
Gammaproteobacteria
Endozoicomonas montiporae [JOKG]
437110
437185
+
Glu
TTC
[ENA]
¡û
>W141775956
JOKG01000003
Gammaproteobacteria
Endozoicomonas montiporae [JOKG]
437539
437614
+
Glu
TTC
[ENA]
¡û
>W141775958
JOKG01000003
Gammaproteobacteria
Endozoicomonas montiporae [JOKG]
438769
438844
+
Glu
TTC
[ENA]
¡û
>W141775960
JOKG01000003
Gammaproteobacteria
Endozoicomonas montiporae [JOKG]
439112
439187
+
Glu
TTC
[ENA]
¡û
>W141775962
JOKG01000003
Gammaproteobacteria
Endozoicomonas montiporae [JOKG]
440475
440550
+
Glu
TTC
[ENA]
¡û
>W141776026
JOKH01000003
Gammaproteobacteria
Endozoicomonas numazuensis [JOKH]
602298
602223
-
Glu
TTC
[ENA]
¡û
>W141776027
JOKH01000003
Gammaproteobacteria
Endozoicomonas numazuensis [JOKH]
600229
600154
-
Glu
TTC
[ENA]
¡û
>W141776029
JOKH01000003
Gammaproteobacteria
Endozoicomonas numazuensis [JOKH]
598865
598790
-
Glu
TTC
[ENA]
¡û
>W141776032
JOKH01000003
Gammaproteobacteria
Endozoicomonas numazuensis [JOKH]
597853
597778
-
Glu
TTC
[ENA]
¡û
>W1910371608
FUFP01000020
Gammaproteobacteria
Halomonas utahensis P-halo [FUFP]
714193
714118
-
Glu
TTC
[ENA]
¡û
>W1910462864
FWPT01000003
Gammaproteobacteria
Parendozoicomonas haliclonae S-B4-1U [FWPT]
287410
287335
-
Glu
TTC
[ENA]
¡û
>W1910462866
FWPT01000003
Gammaproteobacteria
Parendozoicomonas haliclonae S-B4-1U [FWPT]
287065
286990
-
Glu
TTC
[ENA]
¡û
>W1910462868
FWPT01000003
Gammaproteobacteria
Parendozoicomonas haliclonae S-B4-1U [FWPT]
286840
286765
-
Glu
TTC
[ENA]
¡û
>W1910462869
FWPT01000003
Gammaproteobacteria
Parendozoicomonas haliclonae S-B4-1U [FWPT]
286602
286527
-
Glu
TTC
[ENA]
¡û
>W1910462871
FWPT01000003
Gammaproteobacteria
Parendozoicomonas haliclonae S-B4-1U [FWPT]
286379
286304
-
Glu
TTC
[ENA]
¡û
>W1910462873
FWPT01000003
Gammaproteobacteria
Parendozoicomonas haliclonae S-B4-1U [FWPT]
286101
286026
-
Glu
TTC
[ENA]
¡û
>W1910462876
FWPT01000003
Gammaproteobacteria
Parendozoicomonas haliclonae S-B4-1U [FWPT]
285726
285651
-
Glu
TTC
[ENA]
¡û
>W1910462892
FWPT01000007
Gammaproteobacteria
Parendozoicomonas haliclonae S-B4-1U [FWPT]
280815
280740
-
Glu
TTC
[ENA]
¡û
>W1911708824
QPEP01000004
Gammaproteobacteria
Salinibius halmophilus WDS2A16A [QPEP]
275032
274957
-
Glu
TTC
[ENA]
¡û
>W1911708825
QPEP01000004
Gammaproteobacteria
Salinibius halmophilus WDS2A16A [QPEP]
102890
102815
-
Glu
TTC
[ENA]
¡û
>W1911708851
QPEP01000013
Gammaproteobacteria
Salinibius halmophilus WDS2A16A [QPEP]
102870
102945
+
Glu
TTC
[ENA]
¡û
>C161054050
CP013251
Gammaproteobacteria
Endozoicomonas montiporae CL-33 [CP013251]
4053251
4053176
-
Glu
TTC
[Ensembl]
¡û
>C161054052
CP013251
Gammaproteobacteria
Endozoicomonas montiporae CL-33 [CP013251]
4052896
4052821
-
Glu
TTC
[Ensembl]
¡û
>C161054054
CP013251
Gammaproteobacteria
Endozoicomonas montiporae CL-33 [CP013251]
4052467
4052392
-
Glu
TTC
[Ensembl]
¡û
>C161054056
CP013251
Gammaproteobacteria
Endozoicomonas montiporae CL-33 [CP013251]
4052133
4052058
-
Glu
TTC
[Ensembl]
¡û
>C161054058
CP013251
Gammaproteobacteria
Endozoicomonas montiporae CL-33 [CP013251]
4051454
4051379
-
Glu
TTC
[Ensembl]
¡û
>C161054060
CP013251
Gammaproteobacteria
Endozoicomonas montiporae CL-33 [CP013251]
4051107
4051032
-
Glu
TTC
[Ensembl]
¡û
>C161054062
CP013251
Gammaproteobacteria
Endozoicomonas montiporae CL-33 [CP013251]
4049744
4049669
-
Glu
TTC
[Ensembl]
¡û
>W1610576462
LASA01000160
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
14365
14440
+
Glu
TTC
[ENA]
¡û
>W1610576464
LASA01000160
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
14773
14848
+
Glu
TTC
[ENA]
¡û
>W1610576466
LASA01000160
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
15007
15082
+
Glu
TTC
[ENA]
¡û
>W1610576468
LASA01000160
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
15471
15546
+
Glu
TTC
[ENA]
¡û
>W1610576470
LASA01000160
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
15902
15977
+
Glu
TTC
[ENA]
¡û
>W1610576472
LASA01000160
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
20711
20786
+
Glu
TTC
[ENA]
¡û
>W1610576475
LASA01000160
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
21481
21556
+
Glu
TTC
[ENA]
¡û
>W1610576551
LASB01000419
Gammaproteobacteria
Endozoicomonas arenosclerae E-MC227 [LASB]
1682
1757
+
Glu
TTC
[ENA]
¡û
>W1610576553
LASB01000419
Gammaproteobacteria
Endozoicomonas arenosclerae E-MC227 [LASB]
2090
2165
+
Glu
TTC
[ENA]
¡û
>W1610576555
LASB01000419
Gammaproteobacteria
Endozoicomonas arenosclerae E-MC227 [LASB]
2324
2399
+
Glu
TTC
[ENA]
¡û
>W1610576562
LASB01000525
Gammaproteobacteria
Endozoicomonas arenosclerae E-MC227 [LASB]
221
296
+
Glu
TTC
[ENA]
¡û
>W1610576577
LASB01000665
Gammaproteobacteria
Endozoicomonas arenosclerae E-MC227 [LASB]
8751
8676
-
Glu
TTC
[ENA]
¡û
>W1610576580
LASB01000665
Gammaproteobacteria
Endozoicomonas arenosclerae E-MC227 [LASB]
7843
7768
-
Glu
TTC
[ENA]
¡û
>W1610576596
LASB01001818
Gammaproteobacteria
Endozoicomonas arenosclerae E-MC227 [LASB]
1064
989
-
Glu
TTC
[ENA]
¡û
>W1610576598
LASB01001818
Gammaproteobacteria
Endozoicomonas arenosclerae E-MC227 [LASB]
517
442
-
Glu
TTC
[ENA]
¡û
>W1610576609
LASB01002484
Gammaproteobacteria
Endozoicomonas arenosclerae E-MC227 [LASB]
480
405
-
Glu
TTC
[ENA]
¡û
>W1610576615
LASB01002499
Gammaproteobacteria
Endozoicomonas arenosclerae E-MC227 [LASB]
303
228
-
Glu
TTC
[ENA]
¡û
>W1630009881
LASB01000525
Gammaproteobacteria
Endozoicomonas arenosclerae E-MC227 [LASB]
1012
1084
+
Pseudo
TTC
[ENA]
¡û
>W1730012045
LASB01000525
Gammaproteobacteria
Endozoicomonas arenosclerae E-MC227 [LASB]
1012
1084
+
Pseudo
TTC
[ENA]
¡û
>W1710694951
LASA01000160
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
14365
14440
+
Glu
TTC
[ENA]
¡û
>W1710694953
LASA01000160
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
14773
14848
+
Glu
TTC
[ENA]
¡û
>W1710694955
LASA01000160
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
15007
15082
+
Glu
TTC
[ENA]
¡û
>W1710694957
LASA01000160
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
15471
15546
+
Glu
TTC
[ENA]
¡û
>W1710694959
LASA01000160
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
15902
15977
+
Glu
TTC
[ENA]
¡û
>W1710694961
LASA01000160
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
20711
20786
+
Glu
TTC
[ENA]
¡û
>W1710694964
LASA01000160
Gammaproteobacteria
Endozoicomonas arenosclerae ab112 [LASA]
21481
21556
+
Glu
TTC
[ENA]
¡û
>W1710695040
LASB01000419
Gammaproteobacteria
Endozoicomonas arenosclerae E-MC227 [LASB]
1682
1757
+
Glu
TTC
[ENA]
¡û
>W1710695042
LASB01000419
Gammaproteobacteria
Endozoicomonas arenosclerae E-MC227 [LASB]
2090
2165
+
Glu
TTC
[ENA]
¡û
>W1710695044
LASB01000419
Gammaproteobacteria
Endozoicomonas arenosclerae E-MC227 [LASB]
2324
2399
+
Glu
TTC
[ENA]
¡û
>W1710695051
LASB01000525
Gammaproteobacteria
Endozoicomonas arenosclerae E-MC227 [LASB]
221
296
+
Glu
TTC
[ENA]
¡û
>W1710695066
LASB01000665
Gammaproteobacteria
Endozoicomonas arenosclerae E-MC227 [LASB]
8751
8676
-
Glu
TTC
[ENA]
¡û
>W1710695069
LASB01000665
Gammaproteobacteria
Endozoicomonas arenosclerae E-MC227 [LASB]
7843
7768
-
Glu
TTC
[ENA]
¡û
>W1710695085
LASB01001818
Gammaproteobacteria
Endozoicomonas arenosclerae E-MC227 [LASB]
1064
989
-
Glu
TTC
[ENA]
¡û
>W1710695087
LASB01001818
Gammaproteobacteria
Endozoicomonas arenosclerae E-MC227 [LASB]
517
442
-
Glu
TTC
[ENA]
¡û
>W1710695098
LASB01002484
Gammaproteobacteria
Endozoicomonas arenosclerae E-MC227 [LASB]
480
405
-
Glu
TTC
[ENA]
¡û
>W1710695104
LASB01002499
Gammaproteobacteria
Endozoicomonas arenosclerae E-MC227 [LASB]
303
228
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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