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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.280272 (80 seq.)
>A171000823
CP001690
Euryarchaeota
Halogeometricum borinquense DSM 11551 PR 3 [CP001690]
2573373
2573445
+
Arg
GCG
-
¡û
>A171000824
CP001690
Euryarchaeota
Halogeometricum borinquense DSM 11551 PR 3 [CP001690]
2573943
2574015
+
Arg
GCG
-
¡û
>A171001315
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
2260472
2260399
-
Arg
GCG
-
¡û
>A171002474
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
1096077
1096004
-
Arg
GCG
-
¡û
>A171003056
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
3352359
3352431
+
Arg
GCG
-
¡û
>A171003189
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
647819
647747
-
Arg
GCG
-
¡û
>A171004393
CP008874
Euryarchaeota
Halanaeroarchaeum sulfurireducens HSR2 [CP008874]
458547
458619
+
Arg
GCG
-
¡û
>A171006893
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
1387130
1387058
-
Arg
GCG
-
¡û
>A171006943
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
603154
603081
-
Arg
GCG
-
¡û
>WENV180273577
OBEU01000069
[OBEU] marine metagenome; marine
2487
2415
-
Arg
GCG
[ENA]
¢þ
>WENV180318311
OBKM01000372
[OBKM] metagenome; water
8532
8459
-
Arg
GCG
[ENA]
¢þ
>WENV180318624
OBKM01002991
[OBKM] metagenome; water
1539
1611
+
Arg
GCG
[ENA]
¢þ
>WENV180318737
OBKM01007364
[OBKM] metagenome; water
2240
2314
+
Arg
GCG
[ENA]
¢þ
>WENV181404285
OGBZ01010970
[OGBZ] sediment metagenome; hot spring sediment
297
224
-
Arg
GCG
[ENA]
¢þ
>WENV170009086
APHM01021236
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
642
714
+
Arg
GCG
[ENA]
¢þ
>WENV170009208
APHM01021690
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
3717
3789
+
Arg
GCG
[ENA]
¢þ
>WENV170681349
LFFM01000549
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
20345
20418
+
Arg
GCG
[ENA]
¢þ
>WENV170681789
LFFM01002781
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
7459
7531
+
Arg
GCG
[ENA]
¢þ
>WENV170702148
LKMJ01000667
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
12395
12467
+
Arg
GCG
[ENA]
¢þ
>WENV170703259
LKMJ01008560
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
73
1
-
Arg
GCG
[ENA]
¢þ
>WENV170703428
LKMJ01011429
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
335
263
-
Arg
GCG
[ENA]
¢þ
>W1910226754
FNBK01000013
Euryarchaeota
Halorientalis regularis IBRC-M 10760 [FNBK]
99609
99681
+
Arg
GCG
[ENA]
¡û
>W1910227104
FNKQ01000003
Euryarchaeota
Halopelagius longus CGMCC 1.12397 [FNKQ]
307207
307279
+
Arg
GCG
[ENA]
¡û
>W1910227105
FNKQ01000003
Euryarchaeota
Halopelagius longus CGMCC 1.12397 [FNKQ]
307575
307647
+
Arg
GCG
[ENA]
¡û
>W1910227123
FNLC01000001
Euryarchaeota
Natronobacterium texcoconense DSM 24767 [FNLC]
59655
59728
+
Arg
GCG
[ENA]
¡û
>W1910228412
FNPB01000001
Euryarchaeota
Halobellus clavatus CGMCC 1.10118 [FNPB]
441046
440974
-
Arg
GCG
[ENA]
¡û
>W1910228532
FNQT01000003
Euryarchaeota
Haloplanus vescus CGMCC 1.8712 [FNQT]
230887
230815
-
Arg
GCG
[ENA]
¡û
>W1910229808
FOFD01000003
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
835690
835618
-
Arg
GCG
[ENA]
¡û
>W1910229902
FOIC01000008
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
70708
70781
+
Arg
GCG
[ENA]
¡û
>W1910229952
FOIS01000004
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
9902
9975
+
Arg
GCG
[ENA]
¡û
>W1910230229
FOKW01000001
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
16273
16346
+
Arg
GCG
[ENA]
¡û
>W1910230741
FOYT01000001
Euryarchaeota
Halogeometricum rufum CGMCC 1.7736 [FOYT]
669481
669408
-
Arg
GCG
[ENA]
¡û
>W1910230850
FOZS01000002
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
216651
216723
+
Arg
GCG
[ENA]
¡û
>W1910572724
JNCS01000010
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
7325
7397
+
Arg
GCG
[ENA]
¡û
>W1910575894
JROF01000031
Euryarchaeota
Natrinema salifodinae KCY07-B2 [JROF]
39444
39371
-
Arg
GCG
[ENA]
¡û
>W1910583019
JXAN01000067
Euryarchaeota
Natrinema altunense 1A4-DGR [JXAN]
11553
11625
+
Arg
GCG
[ENA]
¡û
>W1910646121
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
2813612
2813684
+
Arg
GCG
[ENA]
¡û
>W1910657563
MASN01000030
Euryarchaeota
Natrialba sp. SSL1 [MASN]
401807
401880
+
Arg
GCG
[ENA]
¡û
>W1910749503
MJCD01000010
Euryarchaeota
Halorubrum lacusprofundi HLS1 [MJCD]
35260
35187
-
Arg
GCG
[ENA]
¡û
>W1911245476
NSKC01000001
Euryarchaeota
Halorubrum salipaludis WN019 [NSKC]
476987
477060
+
Arg
GCG
[ENA]
¡û
>W1911433992
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
2901806
2901733
-
Arg
GCG
[ENA]
¡û
>W1911629816
PSYT01000001
Euryarchaeota
Haloferax sp. Atlit-24N [PSYT]
514408
514336
-
Arg
GCG
[ENA]
¡û
>W1911629879
PSYU01000003
Euryarchaeota
Haloferax sp. Atlit-19N [PSYU]
487398
487470
+
Arg
GCG
[ENA]
¡û
>W1911629914
PSYV01000001
Euryarchaeota
Haloferax sp. Atlit-16N [PSYV]
196063
195991
-
Arg
GCG
[ENA]
¡û
>W1911629953
PSYW01000001
Euryarchaeota
Haloferax sp. Atlit-12N [PSYW]
995311
995383
+
Arg
GCG
[ENA]
¡û
>W1911682210
QKMU01000001
Euryarchaeota
Halogeometricum sp. wsp3 [QKMU]
2006471
2006543
+
Arg
GCG
[ENA]
¡û
>W1911682353
QKNY01000009
Euryarchaeota
Halonotius aquaticus F13-13 [QKNY]
87196
87124
-
Arg
GCG
[ENA]
¡û
>W1911696478
QMDW01000016
Euryarchaeota
Halonotius pteroides CECT 7525 [QMDW]
12828
12900
+
Arg
GCG
[ENA]
¡û
>W1911696819
QNGA01000003
Euryarchaeota
halophilic archaeon H22 [QNGA]
133296
133368
+
Arg
GCG
[ENA]
¡û
>W1911709154
QPHM01000001
Euryarchaeota
Haloplanus salinus JCM 18368 [QPHM]
1671478
1671550
+
Arg
GCG
[ENA]
¡û
>W1911717810
QQST01000001
Euryarchaeota
Halopelagius longus BC12-B1 [QQST]
1329037
1329109
+
Arg
GCG
[ENA]
¡û
>W1911717811
QQST01000001
Euryarchaeota
Halopelagius longus BC12-B1 [QQST]
1329405
1329477
+
Arg
GCG
[ENA]
¡û
>W1911769979
QXIJ01000003
Euryarchaeota
Halobellus sp. Atlit-38R [QXIJ]
211071
210999
-
Arg
GCG
[ENA]
¡û
>W1610000742
ABTX01000001
Euryarchaeota
Halogeometricum borinquense DSM 11551 [ABTX]
959428
959500
+
Pseudo
GCG
[ENA]
¡û
>W1610000743
ABTX01000001
Euryarchaeota
Halogeometricum borinquense DSM 11551 [ABTX]
959998
960070
+
Pseudo
GCG
[ENA]
¡û
>W1610003621
AGCX01000301
Euryarchaeota
Halonotius sp. J07HN4 [AGCX]
23526
23454
-
Pseudo
GCG
[ENA]
¡û
>W1610004154
AGIN01000016
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
110171
110099
-
Pseudo
GCG
[ENA]
¡û
>W1610011723
AOHS01000032
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
64196
64269
+
Pseudo
GCG
[ENA]
¡û
>W1610011782
AOHT01000048
Euryarchaeota
Halogeometricum borinquense DSM 11551 [AOHT]
96716
96644
-
Pseudo
GCG
[ENA]
¡û
>W1610011783
AOHT01000048
Euryarchaeota
Halogeometricum borinquense DSM 11551 [AOHT]
96068
95996
-
Pseudo
GCG
[ENA]
¡û
>W1610012116
AOIB01000014
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
203711
203784
+
Pseudo
GCG
[ENA]
¡û
>W1610012226
AOID01000049
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
8283
8211
-
Pseudo
GCG
[ENA]
¡û
>W1610012278
AOII01000008
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
1450
1377
-
Pseudo
GCG
[ENA]
¡û
>W1610012354
AOIJ01000057
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
62132
62060
-
Pseudo
GCG
[ENA]
¡û
>W1610012407
AOIK01000038
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
23223
23151
-
Pseudo
GCG
[ENA]
¡û
>W1610012436
AOIL01000048
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
94990
94917
-
Pseudo
GCG
[ENA]
¡û
>W1610012482
AOIM01000035
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
166166
166093
-
Pseudo
GCG
[ENA]
¡û
>W1610012571
AOIO01000038
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
88092
88164
+
Pseudo
GCG
[ENA]
¡û
>W1610012599
AOIP01000016
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
104191
104264
+
Pseudo
GCG
[ENA]
¡û
>W1610012682
AOIR01000053
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
218515
218442
-
Pseudo
GCG
[ENA]
¡û
>W1610012707
AOIS01000011
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
71385
71458
+
Pseudo
GCG
[ENA]
¡û
>W1610012751
AOIT01000010
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
114579
114652
+
Pseudo
GCG
[ENA]
¡û
>W1610013535
AOLE01000023
Euryarchaeota
Haloferax sp. ATCC BAA-645 [AOLE]
56039
56111
+
Pseudo
GCG
[ENA]
¡û
>W1610014015
AOLO01000007
Euryarchaeota
Haloferax mediterranei ATCC 33500 [AOLO]
431662
431734
+
Pseudo
GCG
[ENA]
¡û
>W1610014086
AOLP01000017
Euryarchaeota
Haloferax denitrificans ATCC 35960 [AOLP]
231550
231622
+
Pseudo
GCG
[ENA]
¡û
>W1610014420
AOLZ01000029
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
10234
10161
-
Pseudo
GCG
[ENA]
¡û
>W1610019234
ARQA01000383
Euryarchaeota
Halonotius sp. J07HN6 [ARQA]
12734
12662
-
Pseudo
GCG
[ENA]
¡û
>W1610082986
CBMA010000025
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
18986
18914
-
Pseudo
GCG
[ENA]
¡û
>W1610671397
LKCV01000532
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
4484
4411
-
Pseudo
GCG
[ENA]
¡û
>W1610682545
LKNC01000071
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g1 [LKNC]
7459
7531
+
Pseudo
GCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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