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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.28036 (31 seq.)
>W1711505112
MKVE01000019
Bacteroidota
Chryseobacterium sp. 36-9 Sep-36 [MKVE]
45969
46058
+
Ser
GGA
[ENA]
¡û
>WENV180283813
OBID01003507
[OBID] metagenome; sludge
345
258
-
Ser
GGA
[ENA]
¢þ
>WENV180759703
ODHY01083775
[ODHY] human metagenome; G_DNA_Buccal mucosa
238
151
-
Ser
GGA
[ENA]
¢þ
>WENV180863032
ODLF01077875
[ODLF] human metagenome; G_DNA_Buccal mucosa
92
179
+
Ser
GGA
[ENA]
¢þ
>WENV180864823
ODLI01000066
[ODLI] human metagenome; G_DNA_Buccal mucosa
1413
1500
+
Ser
GGA
[ENA]
¢þ
>WENV180937022
ODTV01005321
[ODTV] human metagenome; G_DNA_Buccal mucosa
782
695
-
Ser
GGA
[ENA]
¢þ
>WENV181046775
ODXX01003828
[ODXX] human metagenome; G_DNA_Buccal mucosa
440
353
-
Ser
GGA
[ENA]
¢þ
>WENV181066144
ODYV01085956
[ODYV] human metagenome; G_DNA_Buccal mucosa
144
57
-
Ser
GGA
[ENA]
¢þ
>WENV181834701
OGVG01000028
[OGVG] freshwater metagenome; freshwater
13801
13888
+
Ser
GGA
[ENA]
¢þ
>W141233137
BAVL01000016
Bacteroidota
Chryseobacterium indologenes NBRC 14944 [BAVL]
7303
7214
-
Ser
GGA
[ENA]
¡û
>C181056682
CP022058
Bacteroidota
Chryseobacterium indologenes FDAARGOS_337 [CP022058]
5044492
5044405
-
Ser
GGA
-
¡û
>C181092495
CP023968
Bacteroidota
Chryseobacterium indologenes FDAARGOS_379 [CP023968]
262168
262081
-
Ser
GGA
-
¡û
>C191116321
CP033931
Bacteroidota
Chryseobacterium bernardetii H4638 [CP033931]
4169628
4169541
-
Ser
GGA
-
¡û
>W1910184824
BJTC01000006
Bacteroidota
Chryseobacterium sp. ON_d1 [BJTC]
82512
82599
+
Ser
GGA
[ENA]
¡û
>W1911586408
PIZV01000065
Bacteroidota
Chryseobacterium sp. PMSZPI [PIZV]
13924
14011
+
Ser
GGA
[ENA]
¡û
>W1911701964
QNVV01000011
Bacteroidota
Chryseobacterium pennipullorum 7_F195 [QNVV]
11029
10942
-
Ser
GGA
[ENA]
¡û
>W1810090034
PGFD01000003
Bacteroidota
Chryseobacterium geocarposphaerae DSM 27617 [PGFD]
336286
336373
+
Ser
GGA
[ENA]
¡û
>W1810860727
QTTJ01000001
Bacteroidota
Chryseobacterium sp. 1335 [QTTJ]
2649192
2649279
+
Ser
GGA
[ENA]
¡û
>C151062230
CP009928
Bacteroidota
Chryseobacterium gallinarum DSM 27622 [CP009928]
2715917
2715828
-
Ser
GGA
[Ensembl]
¡û
>W1511685215
LFNE01000014
Bacteroidota
Chryseobacterium sp. FH2 [LFNE]
12483
12572
+
Ser
GGA
[ENA]
¡û
>C161055096
CP013293
Bacteroidota
Chryseobacterium sp. IHB B 17019 [CP013293]
353961
353874
-
Ser
GGA
[Ensembl]
¡û
>W1610205648
FCNN01000147
Bacteroidota
Chryseobacterium indologenes [FCNN]
10181
10270
+
Ser
GGA
[ENA]
¡û
>W1610436661
FJVD01000005
Bacteroidota
Chryseobacterium timonianum G972 [FJVD]
169382
169471
+
Ser
GGA
[ENA]
¡û
>W1710207149
FCNN01000147
Bacteroidota
Chryseobacterium indologenes [FCNN]
10181
10270
+
Ser
GGA
[ENA]
¡û
>W1710436397
FJVD01000005
Bacteroidota
Chryseobacterium timonianum G972 [FJVD]
169382
169471
+
Ser
GGA
[ENA]
¡û
>W1710514900
FNBH01000002
Bacteroidota
Epilithonimonas hungarica hungaricum [FNBH]
36251
36162
-
Ser
GGA
[ENA]
¡û
>W1710518828
FNEG01000007
Bacteroidota
Chryseobacterium jejuense [FNEG]
89292
89203
-
Ser
GGA
[ENA]
¡û
>W1710522367
FNHD01000004
Bacteroidota
Chryseobacterium taihuense [FNHD]
38651
38562
-
Ser
GGA
[ENA]
¡û
>W1710526603
FNKL01000001
Bacteroidota
Chryseobacterium soldanellicola [FNKL]
807131
807220
+
Ser
GGA
[ENA]
¡û
>W1710565791
FORL01000010
Bacteroidota
Chryseobacterium indologenes [FORL]
19037
18948
-
Ser
GGA
[ENA]
¡û
>W1710599102
FTOL01000009
Bacteroidota
Chryseobacterium ureilyticum [FTOL]
164303
164392
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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