This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.280493 (15 seq.)
>WENV180729216
ODGU01262779
[ODGU] human metagenome; G_DNA_Supragingival plaque
7
82
+
Trp
CCA
[ENA]
¢þ
>WENV180751145
ODHS01022765
[ODHS] human metagenome; G_DNA_Supragingival plaque
354
429
+
Trp
CCA
[ENA]
¢þ
>WENV180808453
ODJK01000069
[ODJK] human metagenome; G_DNA_Subgingival plaque
47315
47240
-
Trp
CCA
[ENA]
¢þ
>WENV180847854
ODKT01216376
[ODKT] human metagenome; G_DNA_Supragingival plaque
286
211
-
Trp
CCA
[ENA]
¢þ
>WENV180940043
ODTX01198853
[ODTX] human metagenome; G_DNA_Supragingival plaque
184
109
-
Trp
CCA
[ENA]
¢þ
>WENV180950456
ODUH01000002
[ODUH] human metagenome; G_DNA_Subgingival plaque
49670
49745
+
Trp
CCA
[ENA]
¢þ
>W141167357
AXUD01000001
Bacillota
[Eubacterium] brachy ATCC 33089 [AXUD]
37083
37008
-
Trp
CCA
[ENA]
¡û
>WENV183709880
PDWI01035768
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4164
4089
-
Trp
CCA
[ENA]
¢þ
>C181115588
CP025286
Bacillota
Ethanoligenens harbinense YUAN-3 [CP025286]
886506
886431
-
Trp
CCA
-
¡û
>C191031591
CP025287
Bacillota
Ethanoligenens harbinense B49 [CP025287]
851684
851609
-
Trp
CCA
-
¡û
>C191031646
CP025288
Bacillota
Ethanoligenens harbinense X-29 [CP025288]
886506
886431
-
Trp
CCA
-
¡û
>C191072257
CP030278
Bacillota
Ethanoligenens harbinense W1 [CP030278]
886518
886443
-
Trp
CCA
-
¡û
>W10115272
ADJQ01000002
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
74683
74758
+
Trp
CCA
[ENA]
¡û
>C11108784
CP002400
Bacillota
Ethanoligenens harbinense YUAN-3 [CP002400]
886505
886430
-
Trp
CCA
[Ensembl]
¡û
>W11118858
ADJQ01000002
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
74683
74758
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK