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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.280561 (128 seq.)
>C171109194
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1395982
1396057
+
Met
CAT
-
¡û
>C171109222
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1424145
1424220
+
Met
CAT
-
¡û
>C171109253
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4108690
4108615
-
Met
CAT
-
¡û
>C171109287
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4088449
4088374
-
Met
CAT
-
¡û
>WENV180010158
FLSC01355599
[FLSC] metagenome; saliva
370
445
+
fMet
CAT
[ENA]
¢þ
>WENV180175603
OAWC01000323
[OAWC] human gut metagenome; faeces
6267
6192
-
fMet
CAT
[ENA]
¢þ
>WENV180472825
OBYQ01002520
[OBYQ] human gut metagenome; faeces
571
646
+
fMet
CAT
[ENA]
¢þ
>WENV180606446
OCPT01025632
[OCPT] human gut metagenome; human gut
920
845
-
fMet
CAT
[ENA]
¢þ
>WENV180632907
OCQZ01026128
[OCQZ] human gut metagenome; human gut
55
130
+
fMet
CAT
[ENA]
¢þ
>WENV180685715
OCVV012876224
[OCVV] gut metagenome; gut
1737
1664
-
fMet
CAT
[ENA]
¢þ
>WENV180685719
OCVV012876224
[OCVV] gut metagenome; gut
1737
1664
-
fMet
CAT
[ENA]
¢þ
>WENV180707686
ODFJ01000003
[ODFJ] human metagenome; G_DNA_Tongue dorsum
108215
108140
-
fMet
CAT
[ENA]
¢þ
>WENV180720564
ODGJ01068855
[ODGJ] human metagenome; G_DNA_Tongue dorsum
345
270
-
fMet
CAT
[ENA]
¢þ
>WENV180724599
ODGR01001534
[ODGR] human metagenome; G_DNA_Tongue dorsum
6111
6186
+
fMet
CAT
[ENA]
¢þ
>WENV180753676
ODHT01033212
[ODHT] human metagenome; G_DNA_Stool
1198
1123
-
fMet
CAT
[ENA]
¢þ
>WENV180768930
ODIG01023839
[ODIG] human metagenome; G_DNA_Tongue dorsum
194
119
-
fMet
CAT
[ENA]
¢þ
>WENV180775228
ODIK01000007
[ODIK] human metagenome; G_DNA_Tongue dorsum
21413
21338
-
fMet
CAT
[ENA]
¢þ
>WENV180783846
ODIQ01034549
[ODIQ] human metagenome; G_DNA_Tongue dorsum
76
1
-
fMet
CAT
[ENA]
¢þ
>WENV180790470
ODIT01014497
[ODIT] human metagenome; G_DNA_Tongue dorsum
742
817
+
fMet
CAT
[ENA]
¢þ
>WENV180792399
ODIW01000378
[ODIW] human metagenome; G_DNA_Tongue dorsum
852
777
-
fMet
CAT
[ENA]
¢þ
>WENV180815092
ODJP01000011
[ODJP] human metagenome; G_DNA_Tongue dorsum
148770
148845
+
fMet
CAT
[ENA]
¢þ
>WENV180819345
ODJR01000052
[ODJR] human metagenome; G_DNA_Tongue dorsum
70478
70403
-
fMet
CAT
[ENA]
¢þ
>WENV180819811
ODJR01000549
[ODJR] human metagenome; G_DNA_Tongue dorsum
967
892
-
fMet
CAT
[ENA]
¢þ
>WENV180830153
ODKB01000591
[ODKB] human metagenome; G_DNA_Tongue dorsum
938
863
-
fMet
CAT
[ENA]
¢þ
>WENV180830693
ODKB01009740
[ODKB] human metagenome; G_DNA_Tongue dorsum
422
347
-
fMet
CAT
[ENA]
¢þ
>WENV180856141
ODKZ01003830
[ODKZ] human metagenome; G_DNA_Tongue dorsum
482
407
-
fMet
CAT
[ENA]
¢þ
>WENV180866522
ODLJ01029689
[ODLJ] human metagenome; G_DNA_Tongue dorsum
125
200
+
fMet
CAT
[ENA]
¢þ
>WENV180879720
ODLZ01001920
[ODLZ] human metagenome; G_DNA_Tongue dorsum
9470
9545
+
fMet
CAT
[ENA]
¢þ
>WENV180883909
ODMC01022783
[ODMC] human metagenome; G_DNA_Tongue dorsum
191
266
+
fMet
CAT
[ENA]
¢þ
>WENV180886546
ODME01089369
[ODME] human metagenome; G_DNA_Stool
102
27
-
fMet
CAT
[ENA]
¢þ
>WENV180896033
ODNI01000030
[ODNI] human metagenome; G_DNA_Tongue dorsum
3526
3451
-
fMet
CAT
[ENA]
¢þ
>WENV180896176
ODNI01000157
[ODNI] human metagenome; G_DNA_Tongue dorsum
20505
20430
-
fMet
CAT
[ENA]
¢þ
>WENV180931765
ODTP01009706
[ODTP] human metagenome; G_DNA_Tongue dorsum
1812
1887
+
fMet
CAT
[ENA]
¢þ
>WENV180948391
ODUG01001077
[ODUG] human metagenome; G_DNA_Tongue dorsum
4125
4050
-
fMet
CAT
[ENA]
¢þ
>WENV180959200
ODUM01000149
[ODUM] human metagenome; G_DNA_Tongue dorsum
329
254
-
fMet
CAT
[ENA]
¢þ
>WENV180986008
ODVJ01033285
[ODVJ] human metagenome; G_DNA_Tongue dorsum
191
266
+
fMet
CAT
[ENA]
¢þ
>WENV180990653
ODVN01002991
[ODVN] human metagenome; G_DNA_Tongue dorsum
629
554
-
fMet
CAT
[ENA]
¢þ
>WENV181016621
ODWR01003204
[ODWR] human metagenome; G_DNA_Tongue dorsum
76
1
-
fMet
CAT
[ENA]
¢þ
>WENV181038645
ODXQ01002969
[ODXQ] human metagenome; G_DNA_Tongue dorsum
9241
9316
+
fMet
CAT
[ENA]
¢þ
>WENV181045520
ODXW01000357
[ODXW] human metagenome; G_DNA_Tongue dorsum
26678
26753
+
fMet
CAT
[ENA]
¢þ
>WENV181057574
ODYL01000405
[ODYL] human metagenome; G_DNA_Tongue dorsum
1329
1254
-
fMet
CAT
[ENA]
¢þ
>WENV181060157
ODYM01048896
[ODYM] human metagenome; G_DNA_Tongue dorsum
122
47
-
fMet
CAT
[ENA]
¢þ
>WENV181068428
ODZZ01000043
[ODZZ] human metagenome; G_DNA_Tongue dorsum
251
176
-
fMet
CAT
[ENA]
¢þ
>WENV181073404
OEAO01000196
[OEAO] human metagenome; G_DNA_Tongue dorsum
20328
20253
-
fMet
CAT
[ENA]
¢þ
>WENV181074695
OEAO01020237
[OEAO] human metagenome; G_DNA_Tongue dorsum
1330
1255
-
fMet
CAT
[ENA]
¢þ
>WENV181085965
OEAY01000020
[OEAY] human metagenome; G_DNA_Tongue dorsum
77035
76960
-
fMet
CAT
[ENA]
¢þ
>WENV181094270
OEBY01000041
[OEBY] human metagenome; G_DNA_Tongue dorsum
4566
4491
-
fMet
CAT
[ENA]
¢þ
>WENV181101398
OECT01000012
[OECT] human metagenome; G_DNA_Tongue dorsum
127726
127801
+
fMet
CAT
[ENA]
¢þ
>WENV181105492
OEED01005399
[OEED] human metagenome; G_DNA_Tongue dorsum
2208
2283
+
fMet
CAT
[ENA]
¢þ
>WENV181111887
OEEL01000020
[OEEL] human metagenome; G_DNA_Tongue dorsum
8802
8727
-
fMet
CAT
[ENA]
¢þ
>WENV181112209
OEEL01000244
[OEEL] human metagenome; G_DNA_Tongue dorsum
20341
20266
-
fMet
CAT
[ENA]
¢þ
>WENV181115596
OEEO01152692
[OEEO] human metagenome; G_DNA_Supragingival plaque
132
57
-
fMet
CAT
[ENA]
¢þ
>WENV181139943
OEGN01037827
[OEGN] human metagenome; G_DNA_Tongue dorsum
277
202
-
fMet
CAT
[ENA]
¢þ
>WENV181157678
OEIG01020518
[OEIG] human metagenome; G_DNA_Hard palate
191
266
+
fMet
CAT
[ENA]
¢þ
>WENV181417980
OGCM01001172
[OGCM] human gut metagenome; human gut
21924
21999
+
fMet
CAT
[ENA]
¢þ
>WENV181441390
OGDN01006704
[OGDN] human gut metagenome; human gut
7076
7151
+
fMet
CAT
[ENA]
¢þ
>WENV181453449
OGEB01012193
[OGEB] metagenome; Human gut stool
884
959
+
fMet
CAT
[ENA]
¢þ
>WENV181459192
OGEK01004860
[OGEK] metagenome; Human gut stool
2680
2605
-
fMet
CAT
[ENA]
¢þ
>WENV181502514
OGGI01050915
[OGGI] metagenome; Human gut stool
75
1
-
fMet
CAT
[ENA]
¢þ
>WENV181587459
OGKG01020709
[OGKG] metagenome; Human gut stool
2307
2232
-
fMet
CAT
[ENA]
¢þ
>WENV181617088
OGLZ01027535
[OGLZ] metagenome; Human gut stool
80
5
-
fMet
CAT
[ENA]
¢þ
>WENV181634949
OGMW01056100
[OGMW] metagenome; Human gut stool
78
3
-
fMet
CAT
[ENA]
¢þ
>WENV181789143
OGRO01008063
[OGRO] human gut metagenome; faeces
2726
2801
+
fMet
CAT
[ENA]
¢þ
>WENV181803806
OGSD01063629
[OGSD] human gut metagenome; faeces
654
579
-
fMet
CAT
[ENA]
¢þ
>WENV181868887
OGWX01003581
[OGWX] human gut metagenome; faeces
854
779
-
fMet
CAT
[ENA]
¢þ
>WENV181875215
OGXB01001640
[OGXB] human gut metagenome; faeces
8474
8399
-
fMet
CAT
[ENA]
¢þ
>WENV181887410
OGXL01004860
[OGXL] human gut metagenome; faeces
652
577
-
fMet
CAT
[ENA]
¢þ
>WENV181904082
OGXX01005740
[OGXX] human gut metagenome; faeces
2467
2392
-
fMet
CAT
[ENA]
¢þ
>WENV181907788
OGYA01002618
[OGYA] human gut metagenome; faeces
7172
7097
-
fMet
CAT
[ENA]
¢þ
>WENV181916195
OGYF01059751
[OGYF] human gut metagenome; faeces
10
85
+
fMet
CAT
[ENA]
¢þ
>WENV181932885
OGYS01000008
[OGYS] human gut metagenome; faeces
7016
7091
+
fMet
CAT
[ENA]
¢þ
>WENV181935286
OGYU01002543
[OGYU] human gut metagenome; faeces
7137
7212
+
fMet
CAT
[ENA]
¢þ
>WENV181956509
OGZL01000010
[OGZL] human gut metagenome; faeces
72147
72222
+
fMet
CAT
[ENA]
¢þ
>WENV181973509
OHAA01067944
[OHAA] human gut metagenome; faeces
565
490
-
fMet
CAT
[ENA]
¢þ
>WENV182012432
OHBM01026829
[OHBM] human gut metagenome; faeces
807
732
-
fMet
CAT
[ENA]
¢þ
>WENV182083732
OHGP01000862
[OHGP] human gut metagenome; feces
72
-1
-
fMet
CAT
[ENA]
¢þ
>WENV182084599
OHGQ01018949
[OHGQ] human gut metagenome; feces
210
285
+
fMet
CAT
[ENA]
¢þ
>WENV182124975
OHJS01000148
[OHJS] human gut metagenome; feces
542
617
+
fMet
CAT
[ENA]
¢þ
>WENV182164841
OHMN01002925
[OHMN] human gut metagenome; faeces
5572
5497
-
fMet
CAT
[ENA]
¢þ
>WENV182171590
OHMX01004528
[OHMX] human gut metagenome; feces
1568
1643
+
fMet
CAT
[ENA]
¢þ
>WENV182327422
OHYW01014772
[OHYW] human gut metagenome; feces
529
454
-
fMet
CAT
[ENA]
¢þ
>WENV182341085
OIAF01002785
[OIAF] human gut metagenome; feces
110
35
-
fMet
CAT
[ENA]
¢þ
>WENV182345261
OIAN01001389
[OIAN] human gut metagenome; feces
5658
5733
+
fMet
CAT
[ENA]
¢þ
>WENV182347636
OIAX01005442
[OIAX] human gut metagenome; feces
1463
1388
-
fMet
CAT
[ENA]
¢þ
>WENV182384620
OIDU01051294
[OIDU] human gut metagenome; feces
442
517
+
fMet
CAT
[ENA]
¢þ
>WENV182516197
OIWN01019045
[OIWN] human gut metagenome; faeces
1387
1462
+
fMet
CAT
[ENA]
¢þ
>WENV182628684
OJKQ01027000
[OJKQ] metagenome; faeces
268
343
+
fMet
CAT
[ENA]
¢þ
>WENV182697823
OJOL01043694
[OJOL] human gut metagenome; human gut
159
234
+
fMet
CAT
[ENA]
¢þ
>WENV182705559
OJOV01002159
[OJOV] human gut metagenome; stool sample
2731
2806
+
fMet
CAT
[ENA]
¢þ
>WENV182714081
OJPG01035103
[OJPG] human gut metagenome; stool sample
84
9
-
fMet
CAT
[ENA]
¢þ
>WENV182754206
OJRD01002708
[OJRD] human gut metagenome; stool sample
4145
4070
-
fMet
CAT
[ENA]
¢þ
>W141284418
JALU01000016
Bacillota
Mogibacterium timidum ATCC 33093 [JALU]
33207
33282
+
Met
CAT
[ENA]
¡û
>WENV182875525
OKRX01001793
[OKRX] human gut metagenome; faeces
1862
1937
+
fMet
CAT
[ENA]
¢þ
>WENV182891013
OKSH01000077
[OKSH] human gut metagenome; faeces
80200
80125
-
fMet
CAT
[ENA]
¢þ
>W141291760
JATQ01000014
Bacillota
[Eubacterium] sulci ATCC 35585 [JATQ]
198738
198663
-
Met
CAT
[ENA]
¡û
>WENV183086427
OLJF01039853
[OLJF] metagenome; faeces
68
143
+
fMet
CAT
[ENA]
¢þ
>WENV183101013
OLNG01001779
[OLNG] human gut metagenome; faeces
6890
6815
-
fMet
CAT
[ENA]
¢þ
>WENV183145943
OLOM01001949
[OLOM] human gut metagenome; faeces
5769
5694
-
fMet
CAT
[ENA]
¢þ
>WENV183159449
OLOU01002883
[OLOU] human gut metagenome; faeces
2657
2732
+
fMet
CAT
[ENA]
¢þ
>WENV183172694
OLPC01051023
[OLPC] human gut metagenome; faeces
593
518
-
fMet
CAT
[ENA]
¢þ
>WENV183236317
OLQX01002357
[OLQX] human gut metagenome; faeces
7390
7465
+
fMet
CAT
[ENA]
¢þ
>WENV183237928
OLQY01002318
[OLQY] human gut metagenome; faeces
9957
9882
-
fMet
CAT
[ENA]
¢þ
>WENV183286509
OLSE01017492
[OLSE] human gut metagenome; faeces
1611
1536
-
fMet
CAT
[ENA]
¢þ
>WENV183290031
OLSG01048451
[OLSG] human gut metagenome; faeces
541
466
-
fMet
CAT
[ENA]
¢þ
>WENV183302148
OLSP01006726
[OLSP] human gut metagenome; faeces
594
519
-
fMet
CAT
[ENA]
¢þ
>WENV183315213
OLVR01043113
[OLVR] human gut metagenome; faeces
86
11
-
fMet
CAT
[ENA]
¢þ
>WENV183354609
OLXC01003038
[OLXC] human gut metagenome; feces
4993
5068
+
fMet
CAT
[ENA]
¢þ
>WENV183396570
OLZI01033576
[OLZI] human gut metagenome; feces
203
128
-
fMet
CAT
[ENA]
¢þ
>WENV183436609
OMCC01020499
[OMCC] human gut metagenome; feces
522
597
+
fMet
CAT
[ENA]
¢þ
>WENV183458750
OMDM01070396
[OMDM] human gut metagenome; feces
122
197
+
fMet
CAT
[ENA]
¢þ
>WENV183466139
OMEB01038129
[OMEB] human gut metagenome; feces
131
56
-
fMet
CAT
[ENA]
¢þ
>WENV183594217
OODB01007392
[OODB] human gut metagenome; human gut
225
150
-
fMet
CAT
[ENA]
¢þ
>WENV183602826
OODK01000211
[OODK] human gut metagenome; human gut
60803
60728
-
fMet
CAT
[ENA]
¢þ
>WENV183773865
PPYF01028008
[PPYF] human gut metagenome; stool from patient with Crohn's disease
10047
10122
+
fMet
CAT
[ENA]
¢þ
>WENV183780062
PPYF01158685
[PPYF] human gut metagenome; stool from patient with Crohn's disease
5574
5649
+
fMet
CAT
[ENA]
¢þ
>W1810797785
QRMS01000001
Bacillota
Emergencia timonensis AM07-24 [QRMS]
800999
801074
+
Met
CAT
[ENA]
¡û
>W1810797787
QRMS01000001
Bacillota
Emergencia timonensis AM07-24 [QRMS]
830851
830926
+
Met
CAT
[ENA]
¡û
>W1810870951
QUCQ01000002
Bacillota
Butyricicoccus sp. AM18-35 [QUCQ]
168325
168250
-
Met
CAT
[ENA]
¡û
>W1810883082
QULN01000013
Bacillota
Butyricicoccus sp. OM04-18BH [QULN]
32923
32998
+
Met
CAT
[ENA]
¡û
>C151090389
CP012068
Bacillota
Eubacterium sulci ATCC 35585 [CP012068]
448507
448432
-
Met
CAT
-
¡û
>W121021693
AGWI01000008
Bacillota
[Eubacterium] infirmum F0142 [AGWI]
198738
198663
-
Met
CAT
[ENA]
¡û
>W1610501812
FLKM01000009
Bacillota
Emergencia timonensis SN18 [FLKM]
889405
889480
+
Met
CAT
[ENA]
¡û
>W1610501814
FLKM01000009
Bacillota
Emergencia timonensis SN18 [FLKM]
925206
925281
+
Met
CAT
[ENA]
¡û
>WENV083562
BAAY01000118
Gut microbiome of Human (healthy human sample F2-W, Adult, Female)
5782
5705
-
Met
CAT
[ENA]
>WENV083693
BAAY01003518
Gut microbiome of Human (healthy human sample F2-W, Adult, Female)
681
758
+
Met
CAT
[ENA]
>WENV086729
BABG01005800
Gut microbiome of Human (healthy human sample In-R, Adult, Female)
543
620
+
Met
CAT
[ENA]
>W1710495282
FLKM01000009
Bacillota
Emergencia timonensis SN18 [FLKM]
889405
889480
+
Met
CAT
[ENA]
¡û
>W1710495284
FLKM01000009
Bacillota
Emergencia timonensis SN18 [FLKM]
925206
925281
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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