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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.28073 (32 seq.)
>W1710878655
LMRD01000001
Alphaproteobacteria
Aurantimonas sp. Leaf443 [LMRD]
614387
614298
-
Ser
GCT
[ENA]
¡û
>W1710883190
LMVL01000001
Alphaproteobacteria
Agrobacterium vitis [LMVL]
620826
620737
-
Ser
GCT
[ENA]
¡û
>W1711315214
MAVS01000035
Alphaproteobacteria
Agrobacterium vitis [MAVS]
85275
85364
+
Ser
GCT
[ENA]
¡û
>W1711325935
MBEV01000033
Alphaproteobacteria
Agrobacterium vitis [MBEV]
146360
146271
-
Ser
GCT
[ENA]
¡û
>W1711325942
MBEX01000008
Alphaproteobacteria
Agrobacterium vitis [MBEX]
164368
164279
-
Ser
GCT
[ENA]
¡û
>W1711326059
MBEZ01000049
Alphaproteobacteria
Agrobacterium vitis [MBEZ]
239273
239184
-
Ser
GCT
[ENA]
¡û
>W1711326164
MBFB01000035
Alphaproteobacteria
Agrobacterium vitis [MBFB]
146403
146314
-
Ser
GCT
[ENA]
¡û
>W1711326198
MBFC01000041
Alphaproteobacteria
Agrobacterium vitis [MBFC]
88556
88645
+
Ser
GCT
[ENA]
¡û
>W1711326308
MBFE01000062
Alphaproteobacteria
Agrobacterium vitis [MBFE]
157005
157094
+
Ser
GCT
[ENA]
¡û
>W131182210
ARQE01000009
Alphaproteobacteria
Aureimonas ureilytica DSM 18598 [ARQE]
237755
237844
+
Ser
GCT
[ENA]
¡û
>W1711489080
MKIM01000028
Alphaproteobacteria
Rhizobium oryziradicis [MKIM]
16477
16388
-
Ser
GCT
[ENA]
¡û
>W1711959640
NBZE01000006
Alphaproteobacteria
Allorhizobium ampelinum vitis [NBZE]
95321
95410
+
Ser
GCT
[ENA]
¡û
>C171105027
CP020330
Alphaproteobacteria
Martelella mediterranea DSM 17316 MACL11 [CP020330]
3554461
3554372
-
Ser
GCT
-
¡û
>WENV181322637
OFKT01007939
[OFKT] marine metagenome; sea ice
252
163
-
Ser
GCT
[ENA]
¢þ
>W141180684
AYGY02000149
Alphaproteobacteria
Martelella sp. AD-3 [AYGY]
19580
19669
+
Ser
GCT
[ENA]
¡û
>WENV170498961
CEVT01094817
[CEVT] marine metagenome genome assembly TARA_150_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
152
241
+
Ser
GCT
[ENA]
¢þ
>WENV170795204
MDSV01144439
[MDSV] marine metagenome; seawater
12853
12942
+
Ser
GCT
[ENA]
¢þ
>WENV170850944
MDTA01123495
[MDTA] marine metagenome; seawater
1993
1904
-
Ser
GCT
[ENA]
¢þ
>C09100937
CP000633
Alphaproteobacteria
Allorhizobium ampelinum S4 [CP000633, CP000634]
1205109
1205198
+
Ser
GCT
[Ensembl]
¡û
>W1810365597
PVUG01000029
Alphaproteobacteria
Martelella mediterranea USBA-857 [PVUG]
5745
5656
-
Ser
GCT
[ENA]
¡û
>W1810403809
PYJQ01000005
Alphaproteobacteria
Rhizobium sp. JAB6 [PYJQ]
182067
182156
+
Ser
GCT
[ENA]
¡û
>W1810487001
QAYG01000002
Alphaproteobacteria
Breoghania corrubedonensis DSM 23382 [QAYG]
149708
149619
-
Ser
GCT
[ENA]
¡û
>W1810608989
QGTR01000004
Alphaproteobacteria
Hoeflea marina DSM 16791 [QGTR]
113190
113279
+
Ser
GCT
[ENA]
¡û
>C151072528
CP010803
Alphaproteobacteria
Martelella endophytica YC6887 [CP010803]
3882212
3882301
+
Ser
GCT
[Ensembl]
¡û
>C151083115
CP011479
Alphaproteobacteria
Hoeflea sp. IMCC20628 [CP011479]
1206310
1206221
-
Ser
GCT
[Ensembl]
¡û
>C161070360
CP014275
Alphaproteobacteria
Martelella sp. AD-3 [CP014275]
1469374
1469463
+
Ser
GCT
[Ensembl]
¡û
>W1610056999
BBWS01000023
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
75561
75472
-
Ser
GCT
[ENA]
¡û
>W1610057082
BBWT01000050
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
1426
1337
-
Ser
GCT
[ENA]
¡û
>W1610741001
LMRD01000001
Alphaproteobacteria
Aurantimonas sp. Leaf443 [LMRD]
614387
614298
-
Ser
GCT
[ENA]
¡û
>W1610745116
LMVL01000001
Alphaproteobacteria
Agrobacterium vitis [LMVL]
620826
620737
-
Ser
GCT
[ENA]
¡û
>W1710053698
BBWS01000023
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
75561
75472
-
Ser
GCT
[ENA]
¡û
>W1710053781
BBWT01000050
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
1426
1337
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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