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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.280795 (27 seq.)
>W131165151
ARBI01000022
Actinomycetota
Actinomycetospora chiangmaiensis DSM 45062 [ARBI]
17301
17374
+
His
GTG
[ENA]
¡û
>W131169558
AREV01000012
Actinomycetota
Actinopolymorpha alba DSM 45243 [AREV]
94575
94500
-
His
GTG
[ENA]
¡û
>W1711183535
LWLC01000012
Actinomycetota
Saccharothrix sp. CB00851 [LWLC]
238857
238782
-
His
GTG
[ENA]
¡û
>W131222165
AUBB01000006
Actinomycetota
Pseudonocardia spinosispora DSM 44797 [AUBB]
493467
493542
+
His
GTG
[ENA]
¡û
>W1711724945
MTQP01000065
Actinomycetota
Saccharothrix sp. ALI-22-I [MTQP]
204505
204430
-
His
GTG
[ENA]
¡û
>W1711766549
MUYM01000130
Actinomycetota
Lentzea kentuckyensis [MUYM]
48065
48138
+
His
GTG
[ENA]
¡û
>C171050980
CP016793
Actinomycetota
Lentzea guizhouensis DHS C013 [CP016793]
1080071
1080144
+
His
GTG
-
¡û
>WENV180692576
OCZS010623630
[OCZS] soil metagenome; soil
135
208
+
His
GTG
[ENA]
¢þ
>W141756312
JNXC01000005
Actinomycetota
Saccharothrix sp. NRRL B-16314 [JNXC]
132312
132387
+
His
GTG
[ENA]
¡û
>W141758355
JNYO01000002
Actinomycetota
Saccharothrix syringae [JNYO]
434747
434822
+
His
GTG
[ENA]
¡û
>W141758710
JNYU01000488
Actinomycetota
Umezawaea tangerina [JNYU]
1109
1184
+
His
GTG
[ENA]
¡û
>W141766912
JOEH01000004
Actinomycetota
Streptacidiphilus jeojiense [JOEH]
78448
78373
-
His
GTG
[ENA]
¡û
>W141768616
JOFI01000013
Actinomycetota
Lentzea aerocolonigenes [JOFI]
234643
234716
+
His
GTG
[ENA]
¡û
>W141771490
JOHE01002672
Actinomycetota
Lentzea aerocolonigenes [JOHE]
4920
4847
-
His
GTG
[ENA]
¡û
>W1810364431
PVTF01000012
Actinomycetota
Umezawaea tangerina DSM 44720 [PVTF]
334316
334391
+
His
GTG
[ENA]
¡û
>W1810393071
PYAX01000003
Actinomycetota
Saccharothrix carnea CGMCC 4.7097 [PYAX]
586633
586708
+
His
GTG
[ENA]
¡û
>W1810592231
QFWW01000036
Actinomycetota
Lentzea terrae NEAU-LZS 42 [QFWW]
31331
31258
-
His
GTG
[ENA]
¡û
>W1810597187
QGHB01000014
Actinomycetota
Lentzea atacamensis DSM 45480 [QGHB]
29412
29339
-
His
GTG
[ENA]
¡û
>W1810697009
QLTT01000005
Actinomycetota
Lentzea atacamensis DSM 45479 [QLTT]
243387
243460
+
His
GTG
[ENA]
¡û
>C151017649
CP007155
Actinomycetota
Kutzneria albida DSM 43870 [CP007155]
1480624
1480549
-
His
GTG
[Ensembl]
¡û
>W1510013129
BBOJ01000008
Actinomycetota
Lentzea aerocolonigenes NBRC 13195 [BBOJ]
145429
145356
-
His
GTG
[ENA]
¡û
>W1510013997
BBPM01000016
Actinomycetota
Streptacidiphilus carbonis NBRC 100919 [BBPM]
152040
152115
+
His
GTG
[ENA]
¡û
>W1511529176
JYJG01000484
Actinomycetota
Lentzea aerocolonigenes NRRL B-16140 [JYJG]
9305
9378
+
His
GTG
[ENA]
¡û
>W1511697766
LGED01000269
Actinomycetota
Saccharothrix sp. NRRL B-16348 [LGED]
292439
292514
+
His
GTG
[ENA]
¡û
>C131019831
HE804045
Actinomycetota
Saccharothrix espanaensis DSM 44229 type strain: DSM 44229 [HE804045]
1300526
1300451
-
His
GTG
[Ensembl]
¡û
>W1710515783
FNCC01000006
Actinomycetota
Lentzea fradiae [FNCC]
207585
207658
+
His
GTG
[ENA]
¡û
>W1710561647
FOOI01000001
Actinomycetota
Actinopolymorpha cephalotaxi [FOOI]
124096
124171
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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