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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.280859 (132 seq.)
>W1710797260
LJSX01000004
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [LJSX]
75690
75765
+
Lys
TTT
[ENA]
¡û
>W1710921747
LNZX01000065
Alphaproteobacteria
Bartonella henselae [LNZX]
43557
43632
+
Lys
TTT
[ENA]
¡û
>W1710921780
LNZY01000039
Alphaproteobacteria
Bartonella henselae [LNZY]
43735
43810
+
Lys
TTT
[ENA]
¡û
>W1710921804
LNZZ01000015
Alphaproteobacteria
Bartonella henselae [LNZZ]
73734
73659
-
Lys
TTT
[ENA]
¡û
>W1710921855
LOAA01000069
Alphaproteobacteria
Bartonella henselae [LOAA]
43557
43632
+
Lys
TTT
[ENA]
¡û
>W1710921884
LOAB01000024
Alphaproteobacteria
Bartonella henselae [LOAB]
43761
43836
+
Lys
TTT
[ENA]
¡û
>W1710921910
LOAC01000016
Alphaproteobacteria
Bartonella henselae [LOAC]
43761
43836
+
Lys
TTT
[ENA]
¡û
>W1710921976
LOAD01000044
Alphaproteobacteria
Bartonella henselae [LOAD]
43760
43835
+
Lys
TTT
[ENA]
¡û
>W1710921988
LOAE01000002
Alphaproteobacteria
Bartonella henselae [LOAE]
72498
72423
-
Lys
TTT
[ENA]
¡û
>W1710922030
LOAF01000011
Alphaproteobacteria
Bartonella henselae [LOAF]
69219
69144
-
Lys
TTT
[ENA]
¡û
>W1710922057
LOAG01000001
Alphaproteobacteria
Bartonella henselae [LOAG]
74874
74949
+
Lys
TTT
[ENA]
¡û
>W1710922103
LOAH01000012
Alphaproteobacteria
Bartonella henselae [LOAH]
43882
43957
+
Lys
TTT
[ENA]
¡û
>W1710922163
LOAI01000064
Alphaproteobacteria
Bartonella henselae [LOAI]
68165
68090
-
Lys
TTT
[ENA]
¡û
>W1711018303
LQWW01000009
Alphaproteobacteria
Bartonella bacilliformis [LQWW]
133372
133297
-
Lys
TTT
[ENA]
¡û
>W1711019447
LQXX01000006
Alphaproteobacteria
Bartonella bacilliformis [LQXX]
59256
59181
-
Lys
TTT
[ENA]
¡û
>W1711034274
LRIJ01000002
Alphaproteobacteria
Bartonella henselae str. Houston-1 [LRIJ]
719642
719717
+
Lys
TTT
[ENA]
¡û
>W1711116196
LUAV01000007
Alphaproteobacteria
Ensifer aridi [LUAV]
197822
197747
-
Lys
TTT
[ENA]
¡û
>C171049854
CP016450
Alphaproteobacteria
Sinorhizobium sp. RAC02 [CP016450]
1275772
1275697
-
Lys
TTT
-
¡û
>C171099683
CP019780
Alphaproteobacteria
Bartonella sp. A1379B [CP019780]
624319
624394
+
Lys
TTT
-
¡û
>C171099765
CP019786
Alphaproteobacteria
Bartonella sp. Raccoon60 [CP019786]
679287
679362
+
Lys
TTT
-
¡û
>W131044232
AMQK01000014
Alphaproteobacteria
Bartonella bacilliformis INS [AMQK]
288
213
-
Lys
TTT
[ENA]
¡û
>W131146728
AQIF01000018
Alphaproteobacteria
Brucella ovis IntaBari-2009-88-4 [AQIF]
37461
37386
-
Lys
TTT
[ENA]
¡û
>W131146781
AQIG01000033
Alphaproteobacteria
Brucella ovis IntaBari-2006-46-348 [AQIG]
39523
39448
-
Lys
TTT
[ENA]
¡û
>W131146845
AQIH01000020
Alphaproteobacteria
Brucella ovis IntaBari-2010-47-268 [AQIH]
37358
37283
-
Lys
TTT
[ENA]
¡û
>W131146894
AQII01000024
Alphaproteobacteria
Brucella ovis IntaBari-2006-46-332 [AQII]
37461
37386
-
Lys
TTT
[ENA]
¡û
>W131146958
AQIJ01000019
Alphaproteobacteria
Brucella ovis IntaBari-2010-47-871 [AQIJ]
37461
37386
-
Lys
TTT
[ENA]
¡û
>W131147016
AQIK01000020
Alphaproteobacteria
Brucella ovis IntaBari-2002-82-58 [AQIK]
37460
37385
-
Lys
TTT
[ENA]
¡û
>W131147066
AQIL01000032
Alphaproteobacteria
Brucella ovis IntaBari-2001-319-5096 [AQIL]
39523
39448
-
Lys
TTT
[ENA]
¡û
>W131147127
AQIM01000019
Alphaproteobacteria
Brucella ovis IntaBari-2001-319-4082 [AQIM]
37412
37337
-
Lys
TTT
[ENA]
¡û
>W131147178
AQIN01000018
Alphaproteobacteria
Brucella ovis IntaBari-2008-114-542 [AQIN]
37461
37386
-
Lys
TTT
[ENA]
¡û
>W131147243
AQIO01000022
Alphaproteobacteria
Brucella ovis IntaBari-1993-758 [AQIO]
37461
37386
-
Lys
TTT
[ENA]
¡û
>W131150080
AQKN01000013
Alphaproteobacteria
Brucella ovis 63/96 [AQKN]
78478
78403
-
Lys
TTT
[ENA]
¡û
>W131150134
AQKO01000022
Alphaproteobacteria
Brucella ovis Aug-81 [AQKO]
37461
37386
-
Lys
TTT
[ENA]
¡û
>W131154426
AQNP01000020
Alphaproteobacteria
Brucella ovis 80/125 [AQNP]
37461
37386
-
Lys
TTT
[ENA]
¡û
>W131154478
AQNQ01000031
Alphaproteobacteria
Brucella ovis F8/05B [AQNQ]
39076
39001
-
Lys
TTT
[ENA]
¡û
>W131208348
ATHH01000087
Alphaproteobacteria
Brucella ovis IntaBari-2009-88-3 [ATHH]
179002
179077
+
Lys
TTT
[ENA]
¡û
>C002022
CP000524
Alphaproteobacteria
Bartonella bacilliformis KC583 KC583; ATCC 35685 [CP000524]
844319
844244
-
Lys
TTT
[Ensembl]
¡û
>C003013
BX897699
Alphaproteobacteria
Bartonella henselae str. Houston-1 [BX897699]
949280
949355
+
Lys
TTT
[Ensembl]
¡û
>C004020
BX897700
Alphaproteobacteria
Bartonella quintana str. Toulouse [BX897700]
729960
729885
-
Lys
TTT
[Ensembl]
¡û
>W141009640
AHPB01000023
Alphaproteobacteria
Bartonella quintana JK 39 [AHPB]
52826
52901
+
Lys
TTT
[ENA]
¡û
>W141009661
AHPC01000001
Alphaproteobacteria
Bartonella quintana JK 67 [AHPC]
611930
612005
+
Lys
TTT
[ENA]
¡û
>W141009711
AHPD01000002
Alphaproteobacteria
Bartonella quintana JK 68 [AHPD]
273113
273038
-
Lys
TTT
[ENA]
¡û
>W141009766
AHPE01000018
Alphaproteobacteria
Bartonella quintana JK 56 [AHPE]
274853
274778
-
Lys
TTT
[ENA]
¡û
>W141009811
AHPF01000012
Alphaproteobacteria
Bartonella quintana JK 63 [AHPF]
52792
52867
+
Lys
TTT
[ENA]
¡û
>W141009865
AHPG01000016
Alphaproteobacteria
Bartonella quintana JK 31 [AHPG]
287655
287730
+
Lys
TTT
[ENA]
¡û
>W141009878
AHPH01000003
Alphaproteobacteria
Bartonella quintana JK 19 [AHPH]
273084
273009
-
Lys
TTT
[ENA]
¡û
>W141009940
AHPI01000038
Alphaproteobacteria
Bartonella henselae JK 53 [AHPI]
46446
46521
+
Lys
TTT
[ENA]
¡û
>W141009987
AHPJ01000041
Alphaproteobacteria
Bartonella henselae str. Zeus [AHPJ]
48533
48608
+
Lys
TTT
[ENA]
¡û
>W141010021
AHPK01000002
Alphaproteobacteria
Bartonella rochalimae ATCC BAA-1498 [AHPK]
79564
79489
-
Lys
TTT
[ENA]
¡û
>W141010058
AHPL01000008
Alphaproteobacteria
Bartonella koehlerae C-29 [AHPL]
98364
98439
+
Lys
TTT
[ENA]
¡û
>W141038054
ALVF01000058
Alphaproteobacteria
Bartonella birtlesii E7 [ALVF]
18654
18579
-
Lys
TTT
[ENA]
¡û
>W141038095
ALVG01000050
Alphaproteobacteria
Bartonella birtlesii E11 [ALVG]
62327
62252
-
Lys
TTT
[ENA]
¡û
>W141038109
ALVH01000010
Alphaproteobacteria
Bartonella birtlesii E4 [ALVH]
62343
62268
-
Lys
TTT
[ENA]
¡û
>W141039348
ALWY01000313
Alphaproteobacteria
Bartonella birtlesii H12 [ALWY]
4424
4499
+
Lys
TTT
[ENA]
¡û
>W141071170
ASIS01000007
Alphaproteobacteria
Bartonella bacilliformis Hosp800-02 [ASIS]
556309
556234
-
Lys
TTT
[ENA]
¡û
>W141071206
ASIT01000010
Alphaproteobacteria
Bartonella bacilliformis CUSCO5 [ASIT]
56115
56190
+
Lys
TTT
[ENA]
¡û
>W141071252
ASIU01000007
Alphaproteobacteria
Bartonella bacilliformis Cond044 [ASIU]
562173
562098
-
Lys
TTT
[ENA]
¡û
>W141071294
ASIV01000005
Alphaproteobacteria
Bartonella bacilliformis Ver097 [ASIV]
169902
169827
-
Lys
TTT
[ENA]
¡û
>W141071335
ASIW01000008
Alphaproteobacteria
Bartonella bacilliformis Peru38 [ASIW]
150750
150675
-
Lys
TTT
[ENA]
¡û
>W141071374
ASIX01000008
Alphaproteobacteria
Bartonella bacilliformis VAB9028 [ASIX]
151402
151327
-
Lys
TTT
[ENA]
¡û
>W141071416
ASIY01000007
Alphaproteobacteria
Bartonella bacilliformis Ver075 [ASIY]
562652
562577
-
Lys
TTT
[ENA]
¡û
>W141071460
ASIZ01000008
Alphaproteobacteria
Bartonella bacilliformis CAR600-02 [ASIZ]
511515
511440
-
Lys
TTT
[ENA]
¡û
>WENV181234039
OFET01001079
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
637
562
-
Lys
TTT
[ENA]
¢þ
>WENV181234351
OFEU01000056
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
100711
100636
-
Lys
TTT
[ENA]
¢þ
>C08001854
CP000709
Alphaproteobacteria
Brucella ovis ATCC 25840 [CP000708, CP000709]
573887
573815
-
Lys
TTT
[Ensembl]
¡û
>W141216415
AZUW01000004
Alphaproteobacteria
Ensifer sp. WSM1721 [AZUW]
108525
108600
+
Lys
TTT
[ENA]
¡û
>W141222457
AZZR01000005
Alphaproteobacteria
Bartonella henselae JK 51 [AZZR]
110350
110425
+
Lys
TTT
[ENA]
¡û
>W141222498
AZZS01000007
Alphaproteobacteria
Bartonella henselae JK 50 [AZZS]
110442
110517
+
Lys
TTT
[ENA]
¡û
>W141222558
AZZT01000030
Alphaproteobacteria
Bartonella henselae JK 42 [AZZT]
50296
50371
+
Lys
TTT
[ENA]
¡û
>W141222594
AZZU01000022
Alphaproteobacteria
Bartonella henselae JK 41 [AZZU]
113763
113838
+
Lys
TTT
[ENA]
¡û
>W141222639
AZZV01000011
Alphaproteobacteria
Bartonella quintana BQ2-D70 [AZZV]
10059
9984
-
Lys
TTT
[ENA]
¡û
>W141222658
AZZW01000008
Alphaproteobacteria
Bartonella quintana JK 73rel [AZZW]
615292
615367
+
Lys
TTT
[ENA]
¡û
>W141222705
AZZX01000009
Alphaproteobacteria
Bartonella quintana JK 73 [AZZX]
611467
611542
+
Lys
TTT
[ENA]
¡û
>W141222739
AZZY01000002
Alphaproteobacteria
Bartonella quintana JK 12 [AZZY]
613201
613276
+
Lys
TTT
[ENA]
¡û
>W141222790
AZZZ01000008
Alphaproteobacteria
Bartonella quintana JK 7 [AZZZ]
610764
610839
+
Lys
TTT
[ENA]
¡û
>W141245841
CALU01000005
Alphaproteobacteria
Bartonella florencae R4(2010) [CALU]
43502
43577
+
Lys
TTT
[ENA]
¡û
>W141245901
CALV01000042
Alphaproteobacteria
Bartonella senegalensis OS02 [CALV]
183857
183782
-
Lys
TTT
[ENA]
¡û
>W141245984
CALX01000563
Alphaproteobacteria
Bartonella queenslandensis AUST/NH15 [CALX]
121
46
-
Lys
TTT
[ENA]
¡û
>W141246003
CALY02000045
Alphaproteobacteria
Bartonella rattimassiliensis 15908 [CALY]
1014
1089
+
Lys
TTT
[ENA]
¡û
>C08002160
AM260525
Alphaproteobacteria
Bartonella tribocorum CIP 105476 type strain:506 [AM260525]
1235938
1236013
+
Lys
TTT
[Ensembl]
¡û
>W141262259
CCBL010000001
Alphaproteobacteria
Bartonella doshiae [CCBL]
151247
151172
-
Lys
TTT
[ENA]
¡û
>W141262295
CCBL010000011
Alphaproteobacteria
Bartonella doshiae [CCBL]
42244
42319
+
Lys
TTT
[ENA]
¡û
>W141275385
JACX01000003
Alphaproteobacteria
Bartonella grahamii ATCC 700132 [JACX]
88014
88089
+
Lys
TTT
[ENA]
¡û
>W141275562
JADB01000003
Alphaproteobacteria
Bartonella elizabethae ATCC 49927 [JADB]
150254
150329
+
Lys
TTT
[ENA]
¡û
>W141280282
JAGY01000006
Alphaproteobacteria
Bartonella doshiae ATCC 700133 [JAGY]
48473
48548
+
Lys
TTT
[ENA]
¡û
>WENV170683216
LFIK01007130
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
31
106
+
Lys
TTT
[ENA]
¢þ
>WENV170683364
LFIK01009884
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
7304
7379
+
Lys
TTT
[ENA]
¢þ
>C181037916
CP019489
Alphaproteobacteria
Bartonella sp. 1-1C [CP019489]
689354
689429
+
Lys
TTT
-
¡û
>C181046372
CP020742
Alphaproteobacteria
Bartonella henselae Houston-I [CP020742]
937762
937837
+
Lys
TTT
-
¡û
>C181209317
LS483373
Alphaproteobacteria
Bartonella quintana NCTC12899 [LS483373]
646027
646102
+
Lys
TTT
-
¡û
>C191214144
LR134527
Alphaproteobacteria
Bartonella elizabethae NCTC12898 [LR134527]
834322
834397
+
Lys
TTT
-
¡û
>C191214258
LR134529
Alphaproteobacteria
Bartonella vinsonii NCTC12905 [LR134529]
1959200
1959275
+
Lys
TTT
-
¡û
>W141554718
JHPP01000001
Alphaproteobacteria
Bartonella bacilliformis San Pedro600-02 [JHPP]
370120
370195
+
Lys
TTT
[ENA]
¡û
>W141554755
JHPQ01000003
Alphaproteobacteria
Bartonella bacilliformis str. Heidi Mejia [JHPQ]
70815
70890
+
Lys
TTT
[ENA]
¡û
>W141554804
JHPR01000004
Alphaproteobacteria
Bartonella bacilliformis Peru-18 [JHPR]
416093
416168
+
Lys
TTT
[ENA]
¡û
>W09104824
AANF01000001
Alphaproteobacteria
Bartonella bacilliformis KC583 [AANF]
149847
149772
-
Lys
TTT
[ENA]
¡û
>C09102315
CP001562
Alphaproteobacteria
Bartonella grahamii as4aup [CP001562]
1230455
1230380
-
Lys
TTT
[Ensembl]
¡û
>W1910942144
NJGE01000013
Alphaproteobacteria
Bartonella tribocorum L103 [NJGE]
45328
45403
+
Lys
TTT
[ENA]
¡û
>W1910954270
NJPP01000027
Alphaproteobacteria
Bartonella tribocorum C635 [NJPP]
11247
11322
+
Lys
TTT
[ENA]
¡û
>C151101964
HG965802
Alphaproteobacteria
Bartonella henselae BM1374163 [HG965802]
943412
943487
+
Lys
TTT
[Ensembl]
¡û
>C151102006
HG969191
Alphaproteobacteria
Bartonella henselae BM1374165 [HG969191]
1045310
1045385
+
Lys
TTT
[Ensembl]
¡û
>C151102046
HG969192
Alphaproteobacteria
Bartonella tribocorum BM1374166 [HG969192]
1236940
1237015
+
Lys
TTT
[Ensembl]
¡û
>C151105165
LN879429
Alphaproteobacteria
Bartonella henselae MVT02 [LN879429]
943412
943487
+
Lys
TTT
-
¡û
>C161064368
CP014012
Alphaproteobacteria
Bartonella bacilliformis ATCC 35685D-5 [CP014012]
886304
886229
-
Lys
TTT
-
¡û
>W121059072
AILT01000037
Alphaproteobacteria
Bartonella sp. DB5-6 [AILT]
44967
45042
+
Lys
TTT
[ENA]
¡û
>W121059120
AILU01000038
Alphaproteobacteria
Bartonella washoeensis Sb944nv [AILU]
82319
82394
+
Lys
TTT
[ENA]
¡û
>W121059135
AILV01000002
Alphaproteobacteria
Bartonella doshiae NCTC 12862 [AILV]
99601
99526
-
Lys
TTT
[ENA]
¡û
>W121059179
AILW01000002
Alphaproteobacteria
Bartonella elizabethae Re6043vi [AILW]
414741
414816
+
Lys
TTT
[ENA]
¡û
>W121059323
AILZ01000024
Alphaproteobacteria
Bartonella vinsonii subsp. arupensis OK-94-513 [AILZ]
100222
100147
-
Lys
TTT
[ENA]
¡û
>W121059409
AIMB01000008
Alphaproteobacteria
Bartonella tamiae Th239 [AIMB]
253506
253431
-
Lys
TTT
[ENA]
¡û
>W121059434
AIMC01000010
Alphaproteobacteria
Bartonella birtlesii LL-WM9 [AIMC]
176808
176883
+
Lys
TTT
[ENA]
¡û
>W121059478
AIMD01000035
Alphaproteobacteria
Bartonella taylorii 8TBB [AIMD]
49065
49140
+
Lys
TTT
[ENA]
¡û
>W121059527
AIME01000004
Alphaproteobacteria
Bartonella alsatica IBS 382 [AIME]
69481
69406
-
Lys
TTT
[ENA]
¡û
>W121059560
AIMF01000013
Alphaproteobacteria
Bartonella elizabethae F9251 [AIMF]
163564
163489
-
Lys
TTT
[ENA]
¡û
>W121059585
AIMG01000003
Alphaproteobacteria
Bartonella tamiae Th307 [AIMG]
294118
294193
+
Lys
TTT
[ENA]
¡û
>W121059657
AIMH01000038
Alphaproteobacteria
Bartonella vinsonii subsp. arupensis Pm136co [AIMH]
58198
58273
+
Lys
TTT
[ENA]
¡û
>W121084664
AKIP01000020
Alphaproteobacteria
Bartonella birtlesii IBS 325 [AKIP]
62657
62582
-
Lys
TTT
[ENA]
¡û
>C131002065
CP003123
Alphaproteobacteria
Bartonella australis AUST/NH1 [CP003123]
804128
804203
+
Lys
TTT
[Ensembl]
¡û
>C131002104
CP003124
Alphaproteobacteria
Bartonella vinsonii subsp. berkhoffii str. Winnie [CP003124]
856283
856358
+
Lys
TTT
[Ensembl]
¡û
>C131006651
CP003784
Alphaproteobacteria
Bartonella quintana RM-11 [CP003784]
730317
730242
-
Lys
TTT
[Ensembl]
¡û
>W1610516216
FMBM01000002
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
1242040
1241965
-
Lys
TTT
[ENA]
¡û
>W1610635909
LITW01000001
Alphaproteobacteria
Brucella abortus [LITW]
260359
260434
+
Lys
TTT
[ENA]
¡û
>W1610636272
LIUD01000001
Alphaproteobacteria
Brucella abortus [LIUD]
260280
260355
+
Lys
TTT
[ENA]
¡û
>W1610642801
LJDE01000001
Alphaproteobacteria
Brucella abortus [LJDE]
260728
260803
+
Lys
TTT
[ENA]
¡û
>W1610661217
LJSX01000004
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [LJSX]
75690
75765
+
Lys
TTT
[ENA]
¡û
>W1610673144
LKEE01000031
Alphaproteobacteria
Brucella melitensis C-573 [LKEE]
259156
259231
+
Lys
TTT
[ENA]
¡û
>W1610724615
LMEG01000016
Alphaproteobacteria
Ensifer sp. Root423 [LMEG]
22134
22209
+
Lys
TTT
[ENA]
¡û
>W1610866779
LQWW01000009
Alphaproteobacteria
Bartonella bacilliformis [LQWW]
133372
133297
-
Lys
TTT
[ENA]
¡û
>W1610867735
LQXX01000006
Alphaproteobacteria
Bartonella bacilliformis [LQXX]
59256
59181
-
Lys
TTT
[ENA]
¡û
>W1610882049
LRIJ01000002
Alphaproteobacteria
Bartonella henselae str. Houston-1 [LRIJ]
719642
719717
+
Lys
TTT
[ENA]
¡û
>W1710501507
FMBM01000002
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
1242040
1241965
-
Lys
TTT
[ENA]
¡û
>W1710721089
LFMF01000002
Alphaproteobacteria
Bartonella elizabethae [LFMF]
128564
128489
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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