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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.280861 (92 seq.)
>W1710921744
LNZX01000049
Alphaproteobacteria
Bartonella henselae [LNZX]
156699
156624
-
Lys
CTT
[ENA]
¡û
>W1710921759
LNZY01000005
Alphaproteobacteria
Bartonella henselae [LNZY]
156455
156380
-
Lys
CTT
[ENA]
¡û
>W1710921817
LNZZ01000022
Alphaproteobacteria
Bartonella henselae [LNZZ]
156456
156381
-
Lys
CTT
[ENA]
¡û
>W1710921846
LOAA01000040
Alphaproteobacteria
Bartonella henselae [LOAA]
19531
19606
+
Lys
CTT
[ENA]
¡û
>W1710921874
LOAB01000007
Alphaproteobacteria
Bartonella henselae [LOAB]
78204
78129
-
Lys
CTT
[ENA]
¡û
>W1710921929
LOAC01000049
Alphaproteobacteria
Bartonella henselae [LOAC]
209455
209380
-
Lys
CTT
[ENA]
¡û
>W1710921969
LOAD01000042
Alphaproteobacteria
Bartonella henselae [LOAD]
35127
35202
+
Lys
CTT
[ENA]
¡û
>W1710921984
LOAE01000001
Alphaproteobacteria
Bartonella henselae [LOAE]
156543
156468
-
Lys
CTT
[ENA]
¡û
>W1710922051
LOAF01000039
Alphaproteobacteria
Bartonella henselae [LOAF]
18308
18383
+
Lys
CTT
[ENA]
¡û
>W1710922066
LOAG01000011
Alphaproteobacteria
Bartonella henselae [LOAG]
18447
18522
+
Lys
CTT
[ENA]
¡û
>W1710922099
LOAH01000007
Alphaproteobacteria
Bartonella henselae [LOAH]
209463
209388
-
Lys
CTT
[ENA]
¡û
>W1710922132
LOAI01000001
Alphaproteobacteria
Bartonella henselae [LOAI]
19531
19606
+
Lys
CTT
[ENA]
¡û
>W1711018321
LQWW01000013
Alphaproteobacteria
Bartonella bacilliformis [LQWW]
78485
78410
-
Lys
CTT
[ENA]
¡û
>W1711019465
LQXX01000011
Alphaproteobacteria
Bartonella bacilliformis [LQXX]
2738
2663
-
Lys
CTT
[ENA]
¡û
>W1711034280
LRIJ01000002
Alphaproteobacteria
Bartonella henselae str. Houston-1 [LRIJ]
997840
997915
+
Lys
CTT
[ENA]
¡û
>W1711738573
MUBG01000001
Alphaproteobacteria
Bartonella sp. WD12.1 [MUBG]
979122
979197
+
Lys
CTT
[ENA]
¡û
>W1711766829
MUYW01000039
Alphaproteobacteria
Bartonella taylorii [MUYW]
11553
11628
+
Lys
CTT
[ENA]
¡û
>C171099729
CP019781
Alphaproteobacteria
Bartonella sp. WD16.2 [CP019781]
977208
977283
+
Lys
CTT
-
¡û
>W131044234
AMQK01000016
Alphaproteobacteria
Bartonella bacilliformis INS [AMQK]
7381
7456
+
Lys
CTT
[ENA]
¡û
>C002011
CP000524
Alphaproteobacteria
Bartonella bacilliformis KC583 KC583; ATCC 35685 [CP000524]
911355
911430
+
Lys
CTT
[Ensembl]
¡û
>C003019
BX897699
Alphaproteobacteria
Bartonella henselae str. Houston-1 [BX897699]
1193048
1193123
+
Lys
CTT
[Ensembl]
¡û
>C003999
BX897700
Alphaproteobacteria
Bartonella quintana str. Toulouse [BX897700]
999088
999163
+
Lys
CTT
[Ensembl]
¡û
>W141006733
AGWA01000007
Alphaproteobacteria
Bartonella bovis Apr-91 [AGWA]
55993
56068
+
Lys
CTT
[ENA]
¡û
>W141006762
AGWB01000003
Alphaproteobacteria
Bartonella bovis m02 [AGWB]
788626
788701
+
Lys
CTT
[ENA]
¡û
>W141006814
AGWC01000005
Alphaproteobacteria
Bartonella schoenbuchensis m07a [AGWC]
41906
41981
+
Lys
CTT
[ENA]
¡û
>W141006851
AGWD01000013
Alphaproteobacteria
Bartonella vinsonii subsp. berkhoffii str. Tweed [AGWD]
203630
203705
+
Lys
CTT
[ENA]
¡û
>W141009626
AHPB01000018
Alphaproteobacteria
Bartonella quintana JK 39 [AHPB]
629211
629136
-
Lys
CTT
[ENA]
¡û
>W141009674
AHPC01000001
Alphaproteobacteria
Bartonella quintana JK 67 [AHPC]
343018
342943
-
Lys
CTT
[ENA]
¡û
>W141009725
AHPD01000007
Alphaproteobacteria
Bartonella quintana JK 68 [AHPD]
11603
11678
+
Lys
CTT
[ENA]
¡û
>W141009779
AHPE01000021
Alphaproteobacteria
Bartonella quintana JK 56 [AHPE]
110877
110952
+
Lys
CTT
[ENA]
¡û
>W141009808
AHPF01000011
Alphaproteobacteria
Bartonella quintana JK 63 [AHPF]
343004
342929
-
Lys
CTT
[ENA]
¡û
>W141009833
AHPG01000002
Alphaproteobacteria
Bartonella quintana JK 31 [AHPG]
215641
215716
+
Lys
CTT
[ENA]
¡û
>W141009891
AHPH01000007
Alphaproteobacteria
Bartonella quintana JK 19 [AHPH]
71820
71895
+
Lys
CTT
[ENA]
¡û
>W141009931
AHPI01000035
Alphaproteobacteria
Bartonella henselae JK 53 [AHPI]
138294
138369
+
Lys
CTT
[ENA]
¡û
>W141009974
AHPJ01000038
Alphaproteobacteria
Bartonella henselae str. Zeus [AHPJ]
139132
139207
+
Lys
CTT
[ENA]
¡û
>W141010070
AHPL01000010
Alphaproteobacteria
Bartonella koehlerae C-29 [AHPL]
138316
138391
+
Lys
CTT
[ENA]
¡û
>W141038039
ALVF01000033
Alphaproteobacteria
Bartonella birtlesii E7 [ALVF]
4213
4288
+
Lys
CTT
[ENA]
¡û
>W141038086
ALVG01000034
Alphaproteobacteria
Bartonella birtlesii E11 [ALVG]
8515
8440
-
Lys
CTT
[ENA]
¡û
>W141038123
ALVH01000029
Alphaproteobacteria
Bartonella birtlesii E4 [ALVH]
8029
7954
-
Lys
CTT
[ENA]
¡û
>W141039342
ALWY01000222
Alphaproteobacteria
Bartonella birtlesii H12 [ALWY]
1973
1898
-
Lys
CTT
[ENA]
¡û
>W141071165
ASIS01000007
Alphaproteobacteria
Bartonella bacilliformis Hosp800-02 [ASIS]
623389
623464
+
Lys
CTT
[ENA]
¡û
>W141071217
ASIT01000011
Alphaproteobacteria
Bartonella bacilliformis CUSCO5 [ASIT]
11562
11637
+
Lys
CTT
[ENA]
¡û
>W141071247
ASIU01000007
Alphaproteobacteria
Bartonella bacilliformis Cond044 [ASIU]
629289
629364
+
Lys
CTT
[ENA]
¡û
>W141071301
ASIV01000006
Alphaproteobacteria
Bartonella bacilliformis Ver097 [ASIV]
10860
10935
+
Lys
CTT
[ENA]
¡û
>W141071334
ASIW01000008
Alphaproteobacteria
Bartonella bacilliformis Peru38 [ASIW]
217714
217789
+
Lys
CTT
[ENA]
¡û
>W141071381
ASIX01000009
Alphaproteobacteria
Bartonella bacilliformis VAB9028 [ASIX]
12956
13031
+
Lys
CTT
[ENA]
¡û
>W141071411
ASIY01000007
Alphaproteobacteria
Bartonella bacilliformis Ver075 [ASIY]
629673
629748
+
Lys
CTT
[ENA]
¡û
>W141071454
ASIZ01000008
Alphaproteobacteria
Bartonella bacilliformis CAR600-02 [ASIZ]
578595
578670
+
Lys
CTT
[ENA]
¡û
>WENV181413183
OGCK01036646
[OGCK] hot springs metagenome; hot spring sediment
1006
1078
+
Lys
CTT
[ENA]
¢þ
>W141222463
AZZR01000005
Alphaproteobacteria
Bartonella henselae JK 51 [AZZR]
354207
354282
+
Lys
CTT
[ENA]
¡û
>W141222508
AZZS01000008
Alphaproteobacteria
Bartonella henselae JK 50 [AZZS]
148788
148863
+
Lys
CTT
[ENA]
¡û
>W141222532
AZZT01000007
Alphaproteobacteria
Bartonella henselae JK 42 [AZZT]
159547
159622
+
Lys
CTT
[ENA]
¡û
>W141222568
AZZU01000002
Alphaproteobacteria
Bartonella henselae JK 41 [AZZU]
156438
156513
+
Lys
CTT
[ENA]
¡û
>W141222606
AZZV01000001
Alphaproteobacteria
Bartonella quintana BQ2-D70 [AZZV]
248547
248622
+
Lys
CTT
[ENA]
¡û
>W141222677
AZZW01000008
Alphaproteobacteria
Bartonella quintana JK 73rel [AZZW]
346176
346101
-
Lys
CTT
[ENA]
¡û
>W141222724
AZZX01000009
Alphaproteobacteria
Bartonella quintana JK 73 [AZZX]
342351
342276
-
Lys
CTT
[ENA]
¡û
>W141222758
AZZY01000002
Alphaproteobacteria
Bartonella quintana JK 12 [AZZY]
344299
344224
-
Lys
CTT
[ENA]
¡û
>W141222809
AZZZ01000008
Alphaproteobacteria
Bartonella quintana JK 7 [AZZZ]
341862
341787
-
Lys
CTT
[ENA]
¡û
>W141245920
CALW02000012
Alphaproteobacteria
Bartonella rattaustraliani AUST/NH4 [CALW]
1592
1517
-
Lys
CTT
[ENA]
¡û
>W141245959
CALX01000100
Alphaproteobacteria
Bartonella queenslandensis AUST/NH15 [CALX]
1948
1873
-
Lys
CTT
[ENA]
¡û
>W141246016
CALY02000059
Alphaproteobacteria
Bartonella rattimassiliensis 15908 [CALY]
10839
10764
-
Lys
CTT
[ENA]
¡û
>W141275572
JADB01000004
Alphaproteobacteria
Bartonella elizabethae ATCC 49927 [JADB]
112778
112853
+
Lys
CTT
[ENA]
¡û
>WENV183512425
OMKS01000449
[OMKS] sediment metagenome; hot spring sediment
2979
2907
-
Lys
CTT
[ENA]
¢þ
>C181046378
CP020742
Alphaproteobacteria
Bartonella henselae Houston-I [CP020742]
1215965
1216040
+
Lys
CTT
-
¡û
>C181209344
LS483373
Alphaproteobacteria
Bartonella quintana NCTC12899 [LS483373]
376925
376850
-
Lys
CTT
-
¡û
>W141554739
JHPP01000001
Alphaproteobacteria
Bartonella bacilliformis San Pedro600-02 [JHPP]
192798
192723
-
Lys
CTT
[ENA]
¡û
>W141554776
JHPQ01000003
Alphaproteobacteria
Bartonella bacilliformis str. Heidi Mejia [JHPQ]
3735
3660
-
Lys
CTT
[ENA]
¡û
>W141554811
JHPR01000004
Alphaproteobacteria
Bartonella bacilliformis Peru-18 [JHPR]
578040
578115
+
Lys
CTT
[ENA]
¡û
>W09104814
AANF01000001
Alphaproteobacteria
Bartonella bacilliformis KC583 [AANF]
216883
216958
+
Lys
CTT
[ENA]
¡û
>W1910828857
MWVG01000006
Alphaproteobacteria
Bartonella bovis BbUM [MWVG]
18709
18784
+
Lys
CTT
[ENA]
¡û
>W1910942133
NJGE01000003
Alphaproteobacteria
Bartonella tribocorum L103 [NJGE]
31381
31306
-
Lys
CTT
[ENA]
¡û
>C151101970
HG965802
Alphaproteobacteria
Bartonella henselae BM1374163 [HG965802]
1178378
1178453
+
Lys
CTT
[Ensembl]
¡û
>C151102011
HG969191
Alphaproteobacteria
Bartonella henselae BM1374165 [HG969191]
1264288
1264363
+
Lys
CTT
[Ensembl]
¡û
>C151105171
LN879429
Alphaproteobacteria
Bartonella henselae MVT02 [LN879429]
1178378
1178453
+
Lys
CTT
-
¡û
>C161064357
CP014012
Alphaproteobacteria
Bartonella bacilliformis ATCC 35685D-5 [CP014012]
953340
953415
+
Lys
CTT
-
¡û
>W121059153
AILV01000006
Alphaproteobacteria
Bartonella doshiae NCTC 12862 [AILV]
155192
155267
+
Lys
CTT
[ENA]
¡û
>W121059174
AILW01000002
Alphaproteobacteria
Bartonella elizabethae Re6043vi [AILW]
117404
117479
+
Lys
CTT
[ENA]
¡û
>W121059225
AILX01000005
Alphaproteobacteria
Bartonella washoeensis 085-0475 [AILX]
228293
228218
-
Lys
CTT
[ENA]
¡û
>W121059396
AIMB01000008
Alphaproteobacteria
Bartonella tamiae Th239 [AIMB]
459106
459181
+
Lys
CTT
[ENA]
¡û
>W121059472
AIMD01000024
Alphaproteobacteria
Bartonella taylorii 8TBB [AIMD]
33324
33399
+
Lys
CTT
[ENA]
¡û
>W121059596
AIMG01000003
Alphaproteobacteria
Bartonella tamiae Th307 [AIMG]
88518
88443
-
Lys
CTT
[ENA]
¡û
>W121059655
AIMH01000035
Alphaproteobacteria
Bartonella vinsonii subsp. arupensis Pm136co [AIMH]
168905
168830
-
Lys
CTT
[ENA]
¡û
>W121059359
AIMA01000013
Alphaproteobacteria
Bartonella melophagi K-2C [AIMA]
1651
1576
-
Lys
CTT
[ENA]
¡û
>W121059448
AIMC01000032
Alphaproteobacteria
Bartonella birtlesii LL-WM9 [AIMC]
219449
219374
-
Lys
CTT
[ENA]
¡û
>W121059514
AIME01000003
Alphaproteobacteria
Bartonella alsatica IBS 382 [AIME]
175923
175848
-
Lys
CTT
[ENA]
¡û
>W121084674
AKIP01000034
Alphaproteobacteria
Bartonella birtlesii IBS 325 [AKIP]
35094
35169
+
Lys
CTT
[ENA]
¡û
>C131006630
CP003784
Alphaproteobacteria
Bartonella quintana RM-11 [CP003784]
1002738
1002813
+
Lys
CTT
[Ensembl]
¡û
>C131002071
CP003123
Alphaproteobacteria
Bartonella australis AUST/NH1 [CP003123]
1009501
1009576
+
Lys
CTT
[Ensembl]
¡û
>C131002132
CP003124
Alphaproteobacteria
Bartonella vinsonii subsp. berkhoffii str. Winnie [CP003124]
709168
709093
-
Lys
CTT
[Ensembl]
¡û
>W1610866797
LQWW01000013
Alphaproteobacteria
Bartonella bacilliformis [LQWW]
78485
78410
-
Lys
CTT
[ENA]
¡û
>W1610867753
LQXX01000011
Alphaproteobacteria
Bartonella bacilliformis [LQXX]
2738
2663
-
Lys
CTT
[ENA]
¡û
>W1610882055
LRIJ01000002
Alphaproteobacteria
Bartonella henselae str. Houston-1 [LRIJ]
997840
997915
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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