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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.280998 (70 seq.)
>W1710885348
LMXE01000002
Bacillota
Leuconostoc mesenteroides [LMXE]
432611
432535
-
Arg
CCT
[ENA]
¡û
>W1711617469
MPAM01000020
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAM]
448
372
-
Arg
CCT
[ENA]
¡û
>W1711617516
MPAN01000018
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAN]
483
407
-
Arg
CCT
[ENA]
¡û
>W1711617577
MPAO01000064
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAO]
6204
6280
+
Arg
CCT
[ENA]
¡û
>W1711617618
MPAP01000023
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAP]
483
407
-
Arg
CCT
[ENA]
¡û
>W1711617667
MPAQ01000017
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAQ]
498
422
-
Arg
CCT
[ENA]
¡û
>W1711617775
MPAS01000063
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAS]
587
511
-
Arg
CCT
[ENA]
¡û
>W1711617781
MPAT01000001
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAT]
483
407
-
Arg
CCT
[ENA]
¡û
>W1711617874
MPAU01000063
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAU]
482
406
-
Arg
CCT
[ENA]
¡û
>W1711622346
MPEA01000050
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEA]
127180
127256
+
Arg
CCT
[ENA]
¡û
>W1711622399
MPEB01000064
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEB]
54839
54915
+
Arg
CCT
[ENA]
¡û
>W1711622482
MPEC01000090
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEC]
5996
6072
+
Arg
CCT
[ENA]
¡û
>W1711622492
MPED01000002
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPED]
483
407
-
Arg
CCT
[ENA]
¡û
>W1711622590
MPEF01000002
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEF]
483
407
-
Arg
CCT
[ENA]
¡û
>W1711622638
MPEG01000002
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEG]
483
407
-
Arg
CCT
[ENA]
¡û
>W1711622683
MPEH01000001
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEH]
483
407
-
Arg
CCT
[ENA]
¡û
>W1711622735
MPEI01000002
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEI]
79997
80073
+
Arg
CCT
[ENA]
¡û
>W1711622782
MPEJ01000001
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEJ]
483
407
-
Arg
CCT
[ENA]
¡û
>W1711627188
MPLH01000013
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLH]
17705
17629
-
Arg
CCT
[ENA]
¡û
>W1711627235
MPLI01000001
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPLI]
93392
93468
+
Arg
CCT
[ENA]
¡û
>W1711627302
MPLJ01000012
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLJ]
26833
26909
+
Arg
CCT
[ENA]
¡û
>W1711627539
MPLO01000004
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLO]
86438
86514
+
Arg
CCT
[ENA]
¡û
>W1711627580
MPLP01000001
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLP]
86438
86514
+
Arg
CCT
[ENA]
¡û
>W1711627635
MPLQ01000001
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLQ]
143107
143031
-
Arg
CCT
[ENA]
¡û
>W1711627695
MPLR01000010
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLR]
23360
23284
-
Arg
CCT
[ENA]
¡û
>C171019419
CP013016
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides DRC0211 [CP013016]
584591
584515
-
Arg
CCT
-
¡û
>C171032536
CP014611
Bacillota
Leuconostoc mesenteroides subsp. jonggajibkimchii DRC1506 [CP014611]
584367
584291
-
Arg
CCT
-
¡û
>C171037215
CP015247
Bacillota
Leuconostoc suionicum DSM 20241 [CP015247]
581693
581619
-
Arg
CCT
-
¡û
>C171038900
CP015442
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides BD1710 [CP015442]
616219
616143
-
Arg
CCT
-
¡û
>C171111806
CP020731
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides FM06 [CP020731]
262670
262746
+
Arg
CCT
-
¡û
>C012157
CP000414
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 [CP000414]
589679
589604
-
Arg
CCT
[Ensembl]
¡û
>W141075602
ATAZ01000034
Bacillota
Leuconostoc mesenteroides subsp. cremoris TIFN8 [ATAZ]
757
833
+
Arg
CCT
[ENA]
¡û
>W141292180
JAUJ01000022
Bacillota
Leuconostoc mesenteroides subsp. cremoris T26 [JAUJ]
449
373
-
Arg
CCT
[ENA]
¡û
>WENV183511604
OMJG01000995
[OMJG] food metagenome; Cotija cheese
17036
16961
-
Arg
CCT
[ENA]
¢þ
>C181003772
AP017935
Bacillota
Leuconostoc suionicum LT-38 [AP017935]
828953
828879
-
Arg
CCT
-
¡û
>C181003836
AP017936
Bacillota
Leuconostoc mesenteroides LK-151 [AP017936]
819952
819877
-
Arg
CCT
-
¡û
>C181054940
CP021966
Bacillota
Leuconostoc mesenteroides CBA7131 [CP021966]
584098
584023
-
Arg
CCT
-
¡û
>C191019034
CP021491
Bacillota
Leuconostoc mesenteroides WiKim33 [CP021491]
556172
556247
+
Arg
CCT
-
¡û
>C191135424
CP035139
Bacillota
Leuconostoc mesenteroides SRCM103356 [CP035139]
584098
584023
-
Arg
CCT
-
¡û
>C191137979
CP035271
Bacillota
Leuconostoc mesenteroides SRCM103453 [CP035271]
584099
584024
-
Arg
CCT
-
¡û
>C191146262
CP035746
Bacillota
Leuconostoc mesenteroides SRCM103460 [CP035746]
584094
584019
-
Arg
CCT
-
¡û
>W09100527
AABH02000074
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 [AABH]
4435
4511
+
Arg
CCT
[ENA]
¡û
>W09127267
ACKV01000071
Bacillota
Leuconostoc mesenteroides subsp. cremoris ATCC 19254 [ACKV]
6792
6868
+
Arg
CCT
[ENA]
¡û
>W1910181167
BJLS01000001
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides NBRC 3832 [BJLS]
188543
188468
-
Arg
CCT
[ENA]
¡û
>W1910810805
MUXD01000001
Bacillota
Leuconostoc mesenteroides YL48 [MUXD]
158589
158514
-
Arg
CCT
[ENA]
¡û
>W1910870978
NCWT01000009
Bacillota
Leuconostoc mesenteroides OG2 [NCWT]
26368
26443
+
Arg
CCT
[ENA]
¡û
>W1911533336
OKQR01000001
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 8486 [OKQR]
919132
919206
+
Arg
CCT
[ENA]
¡û
>W1911533487
OKQU01000001
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 9216 [OKQU]
1043860
1043934
+
Arg
CCT
[ENA]
¡û
>W1911533590
OKQW01000001
Bacillota
Leuconostoc mesenteroides CECT 9268 [OKQW]
415018
415093
+
Arg
CCT
[ENA]
¡û
>W1911533947
OKRL01000001
Bacillota
Leuconostoc mesenteroides CECT 9217 [OKRL]
436327
436252
-
Arg
CCT
[ENA]
¡û
>W1911538478
OMON01000001
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 8484 [OMON]
919000
919074
+
Arg
CCT
[ENA]
¡û
>W1911539179
OMPP01000001
Bacillota
Leuconostoc mesenteroides CECT 9266 [OMPP]
436331
436256
-
Arg
CCT
[ENA]
¡û
>W1810705418
QMJH01000001
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_608 [QMJH]
188507
188582
+
Arg
CCT
[ENA]
¡û
>W1810705461
QMJI01000001
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_609 [QMJI]
188477
188552
+
Arg
CCT
[ENA]
¡û
>W1810705549
QMJK01000004
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_611 [QMJK]
83327
83252
-
Arg
CCT
[ENA]
¡û
>C151089414
CP012009
Bacillota
Leuconostoc mesenteroides subsp. dextranicum DSM 20484 [CP012009]
1295437
1295361
-
Arg
CCT
[Ensembl]
¡û
>W1510013888
BBPK01000021
Bacillota
Leuconostoc mesenteroides Wikim17 [BBPK]
83357
83281
-
Arg
CCT
[ENA]
¡û
>WENV11100289
AEKF01000021
Food metagenome, Jonggazip commercial cabbage kimchi
20460
20536
+
Arg
CCT
[ENA]
¡û
>W1511346265
JRGZ01000002
Bacillota
Leuconostoc mesenteroides P45 [JRGZ]
446743
446667
-
Arg
CCT
[ENA]
¡û
>W11141985
AEOQ01000053
Bacillota
Leuconostoc pseudomesenteroides KCTC 3652 [AEOQ]
728
804
+
Arg
CCT
[ENA]
¡û
>W1511585380
LAYN01000002
Bacillota
Leuconostoc mesenteroides subsp. dextranicum LbE15 [LAYN]
129865
129941
+
Arg
CCT
[ENA]
¡û
>W1511585691
LAYU01000002
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides LbE16 [LAYU]
73371
73447
+
Arg
CCT
[ENA]
¡û
>W1511585737
LAYV01000001
Bacillota
Leuconostoc mesenteroides subsp. cremoris LbT16 [LAYV]
15052
15128
+
Arg
CCT
[ENA]
¡û
>C121005824
CP003101
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides J18 [CP003101]
584349
584273
-
Arg
CCT
[Ensembl]
¡û
>C161074422
CP014610
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides BD3749 [CP014610]
584200
584124
-
Arg
CCT
-
¡û
>W1610061381
BCMO01000004
Bacillota
Leuconostoc mesenteroides [BCMO]
12380
12304
-
Arg
CCT
[ENA]
¡û
>W1610061418
BCMP01000002
Bacillota
Leuconostoc mesenteroides [BCMP]
164059
163983
-
Arg
CCT
[ENA]
¡û
>W1610747274
LMXE01000002
Bacillota
Leuconostoc mesenteroides [LMXE]
432611
432535
-
Arg
CCT
[ENA]
¡û
>W1710059046
BCMO01000004
Bacillota
Leuconostoc mesenteroides [BCMO]
12380
12304
-
Arg
CCT
[ENA]
¡û
>W1710059083
BCMP01000002
Bacillota
Leuconostoc mesenteroides [BCMP]
164059
163983
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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