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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281007 (26 seq.)
>W1711343496
MCIJ01000001
Actinomycetota
Pseudonocardia sp. Ae150A_Ps1 [MCIJ]
2683116
2683041
-
Met
CAT
[ENA]
¡û
>W1711343546
MCIK01000001
Actinomycetota
Pseudonocardia sp. Ae168_Ps1 [MCIK]
2681720
2681645
-
Met
CAT
[ENA]
¡û
>W1711343570
MCIL01000001
Actinomycetota
Pseudonocardia sp. Ae263_Ps1 [MCIL]
2789509
2789584
+
Met
CAT
[ENA]
¡û
>W1711343659
MCIM01000001
Actinomycetota
Pseudonocardia sp. Ae331_Ps2 [MCIM]
1378882
1378807
-
Met
CAT
[ENA]
¡û
>W1711343704
MCIN01000001
Actinomycetota
Pseudonocardia sp. Ae356_Ps1 [MCIN]
4318239
4318164
-
Met
CAT
[ENA]
¡û
>W1711343746
MCIO01000001
Actinomycetota
Pseudonocardia sp. Ae406_Ps2 [MCIO]
4701670
4701745
+
Met
CAT
[ENA]
¡û
>W1711343822
MCIP01000001
Actinomycetota
Pseudonocardia sp. Ae505_Ps2 [MCIP]
749414
749339
-
Met
CAT
[ENA]
¡û
>W1711343853
MCIQ01000001
Actinomycetota
Pseudonocardia sp. Ae706_Ps2 [MCIQ]
4720867
4720942
+
Met
CAT
[ENA]
¡û
>W1711343916
MCIR01000001
Actinomycetota
Pseudonocardia sp. Ae707_Ps1 [MCIR]
5525343
5525268
-
Met
CAT
[ENA]
¡û
>W1711343971
MCIS01000001
Actinomycetota
Pseudonocardia sp. Ae717_Ps2 [MCIS]
5105025
5104950
-
Met
CAT
[ENA]
¡û
>W1711427792
MIFY01000014
Actinomycetota
Pseudonocardia autotrophica [MIFY]
283387
283312
-
Met
CAT
[ENA]
¡û
>W1711427949
MIGB01000010
Actinomycetota
Pseudonocardia autotrophica [MIGB]
24692
24765
+
Met
CAT
[ENA]
¡û
>C191005738
AP018920
Actinomycetota
Pseudonocardia autotrophica NBRC 12743 [AP018920]
6273491
6273418
-
Met
CAT
-
¡û
>W1910182955
BJNH01000091
Actinomycetota
Pseudonocardia saturnea NBRC 14499 [BJNH]
24686
24759
+
Met
CAT
[ENA]
¡û
>W1810121489
PHUJ01000003
Actinomycetota
Pseudonocardia alni DSM 44104 [PHUJ]
2614785
2614710
-
Met
CAT
[ENA]
¡û
>C151074975
CP010989
Actinomycetota
Pseudonocardia sp. EC080625-04 [CP010989]
347348
347423
+
Met
CAT
-
¡û
>C151087170
CP011862
Actinomycetota
Pseudonocardia sp. AL041005-10 [CP011862]
2798501
2798426
-
Met
CAT
-
¡û
>C151087180
CP011868
Actinomycetota
Pseudonocardia sp. HH130629-09 [CP011868]
200396
200471
+
Met
CAT
-
¡û
>W10118420
ADUJ01000840
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
31920
31995
+
Met
CAT
[ENA]
¡û
>W10128103
AEGE01000391
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
14707
14632
-
Met
CAT
[ENA]
¡û
>WENV11100083
ADWX01090327
Ant fungus garden metagenome, Atta colombica fungus garden
372
297
-
Met
CAT
[ENA]
¡û
>W11123495
ADUJ01000840
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
31920
31995
+
Met
CAT
[ENA]
¡û
>W11136815
AEGE01000391
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
14707
14632
-
Met
CAT
[ENA]
¡û
>C161040329
CP012181
Actinomycetota
Pseudonocardia sp. EC080610-09 [CP012181]
1919416
1919491
+
Met
CAT
-
¡û
>C161040388
CP012184
Actinomycetota
Pseudonocardia sp. EC080619-01 [CP012184]
3631952
3632027
+
Met
CAT
[Ensembl]
¡û
>C161061294
CP013854
Actinomycetota
Pseudonocardia sp. HH130630-07 [CP013854]
3067074
3067149
+
Met
CAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK