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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281129 (18 seq.)
>W131169882
ARFC01000001
Bacteroidota
Spirosoma luteum DSM 19990 [ARFC]
924407
924482
+
Gly
CCC
[ENA]
¡û
>W131169939
ARFD01000052
Bacteroidota
Spirosoma spitsbergense DSM 19989 [ARFD]
1638
1565
-
Gly
CCC
[ENA]
¡û
>W1711606589
MORL01000015
Bacteroidota
Arsenicibacter rosenii [MORL]
22764
22691
-
Gly
CCC
[ENA]
¡û
>W1711769473
MVEC01000019
Bacteroidota
Spirosoma sp. 209 [MVEC]
106987
107062
+
Gly
CCC
[ENA]
¡û
>C171037558
CP015317
Bacteroidota
Fibrella sp. ES10-3-2-2 [CP015317]
2087383
2087310
-
Gly
CCC
-
¡û
>C171104425
CP020105
Bacteroidota
Spirosoma rigui KCTC 12531 [CP020105]
710557
710632
+
Gly
CCC
-
¡û
>W131181656
ARPG01000002
Bacteroidota
Rudanella lutea DSM 19387 [ARPG]
3040711
3040786
+
Gly
CCC
[ENA]
¡û
>C181113141
CP025096
Bacteroidota
Spirosoma pollinicola Ha7 [CP025096]
3877604
3877531
-
Gly
CCC
-
¡û
>W09109930
ABUR01000018
Bacteroidota
Spirosoma linguale DSM 74 [ABUR]
151096
151021
-
Gly
CCC
[ENA]
¡û
>W1911497291
OCNH01000005
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
410089
410016
-
Gly
CCC
[ENA]
¡û
>W1911726810
QTJY01000014
Bacteroidota
Larkinella soli MIMbqt9 [QTJY]
45040
45113
+
Gly
CCC
[ENA]
¡û
>W1810692096
QLII01000001
Bacteroidota
Spirosoma telluris HMF3257 [QLII]
6094785
6094712
-
Gly
CCC
[ENA]
¡û
>W1810745125
QOWE01000002
Bacteroidota
Larkinella punicea zzj9 [QOWE]
294402
294476
+
Gly
CCC
[ENA]
¡û
>SRA1014307
SRR023845.83485
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
195
120
-
Gly
CCC
[SRA]
>C151068612
CP010429
Bacteroidota
Spirosoma radiotolerans DG5A [CP010429]
5793853
5793926
+
Gly
CCC
[Ensembl]
¡û
>C10111778
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
7130142
7130067
-
Gly
CCC
[Ensembl]
¡û
>C161104982
HE796683
Bacteroidota
Fibrella aestuarina BUZ 2 [HE796683]
6415470
6415395
-
Gly
CCC
[Ensembl]
¡û
>W1710558217
FOLQ01000038
Bacteroidota
Spirosoma endophyticum [FOLQ]
18583
18508
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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