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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281147 (107 seq.)
>W1711006479
LQOJ01000073
Actinomycetota
Mycolicibacterium fallax [LQOJ]
133892
133819
-
Asn
GTT
[ENA]
¡û
>W1711006745
LQOP01000008
Actinomycetota
Mycolicibacterium conceptionense [LQOP]
94394
94319
-
Asn
GTT
[ENA]
¡û
>W1711006795
LQOQ01000015
Actinomycetota
Mycolicibacterium confluentis [LQOQ]
65261
65334
+
Asn
GTT
[ENA]
¡û
>W1711276006
LZHU01000006
Actinomycetota
Mycolicibacterium conceptionense [LZHU]
74405
74330
-
Asn
GTT
[ENA]
¡û
>W1711276089
LZHW01000001
Actinomycetota
Mycobacterium sp. ACS4331 [LZHW]
9100
9173
+
Asn
GTT
[ENA]
¡û
>W1711276177
LZHX01000089
Actinomycetota
Mycolicibacterium conceptionense [LZHX]
74405
74330
-
Asn
GTT
[ENA]
¡û
>W1711276289
LZIA01000005
Actinomycetota
Mycolicibacterium conceptionense [LZIA]
74405
74330
-
Asn
GTT
[ENA]
¡û
>W1711276667
LZIH01000373
Actinomycetota
Mycolicibacterium fortuitum [LZIH]
45442
45367
-
Asn
GTT
[ENA]
¡û
>W1711277037
LZIP01000057
Actinomycetota
Mycolicibacterium fortuitum [LZIP]
45437
45362
-
Asn
GTT
[ENA]
¡û
>W1711277339
LZIV01000144
Actinomycetota
Mycolicibacterium fortuitum [LZIV]
37680
37755
+
Asn
GTT
[ENA]
¡û
>W1711277363
LZIW01000078
Actinomycetota
Mycolicibacterium fortuitum [LZIW]
25234
25309
+
Asn
GTT
[ENA]
¡û
>W1711277718
LZJD01000153
Actinomycetota
Mycobacterium sp. E802 [LZJD]
43131
43206
+
Asn
GTT
[ENA]
¡û
>W1711278786
LZKA01000057
Actinomycetota
Mycolicibacterium conceptionense [LZKA]
237423
237498
+
Asn
GTT
[ENA]
¡û
>W1711279338
LZKM01000039
Actinomycetota
Mycolicibacterium fortuitum [LZKM]
49749
49824
+
Asn
GTT
[ENA]
¡û
>W1711279389
LZKN01000061
Actinomycetota
Mycolicibacterium fortuitum [LZKN]
115423
115498
+
Asn
GTT
[ENA]
¡û
>W1711279441
LZKO01000074
Actinomycetota
Mycolicibacterium fortuitum [LZKO]
46936
46861
-
Asn
GTT
[ENA]
¡û
>W1711280634
LZLN01000218
Actinomycetota
Mycolicibacterium conceptionense [LZLN]
3572
3647
+
Asn
GTT
[ENA]
¡û
>W1711280647
LZLO01000006
Actinomycetota
Mycolicibacterium fortuitum [LZLO]
38702
38777
+
Asn
GTT
[ENA]
¡û
>W1711280713
LZLP01000037
Actinomycetota
Mycolicibacterium fortuitum [LZLP]
49756
49831
+
Asn
GTT
[ENA]
¡û
>W1711281220
LZLZ01000336
Actinomycetota
Mycolicibacterium fortuitum [LZLZ]
20342
20417
+
Asn
GTT
[ENA]
¡û
>W1711285515
LZSI01000188
Actinomycetota
Mycolicibacterium fortuitum [LZSI]
31659
31584
-
Asn
GTT
[ENA]
¡û
>W1711285550
LZSJ01000075
Actinomycetota
Mycolicibacterium fortuitum [LZSJ]
45399
45324
-
Asn
GTT
[ENA]
¡û
>W1711285627
LZSK01000103
Actinomycetota
Mycolicibacterium conceptionense [LZSK]
257807
257882
+
Asn
GTT
[ENA]
¡û
>W1711285764
LZSN01000093
Actinomycetota
Mycolicibacterium fortuitum [LZSN]
150335
150260
-
Asn
GTT
[ENA]
¡û
>W1711285937
LZSR01000065
Actinomycetota
Mycolicibacterium fortuitum [LZSR]
114743
114818
+
Asn
GTT
[ENA]
¡û
>W1711286012
LZSS01000217
Actinomycetota
Mycolicibacterium fortuitum [LZSS]
31296
31221
-
Asn
GTT
[ENA]
¡û
>W1711286410
LZTB01000011
Actinomycetota
Mycobacterium sp. 852013-50091_SCH5140682 [LZTB]
32914
32839
-
Asn
GTT
[ENA]
¡û
>W1711324844
MBDY01000081
Actinomycetota
Mycolicibacterium porcinum vulneris [MBDY]
34274
34199
-
Asn
GTT
[ENA]
¡û
>W1711325160
MBEF01000075
Actinomycetota
Mycolicibacterium vulneris [MBEF]
182060
182135
+
Asn
GTT
[ENA]
¡û
>W1711325215
MBEG01000073
Actinomycetota
Mycolicibacterium vulneris [MBEG]
239732
239807
+
Asn
GTT
[ENA]
¡û
>W1711325260
MBEH01000059
Actinomycetota
Mycolicibacterium vulneris [MBEH]
239788
239863
+
Asn
GTT
[ENA]
¡û
>W1711325347
MBEJ01000069
Actinomycetota
Mycobacterium sp. NS-7484 [MBEJ]
61058
60983
-
Asn
GTT
[ENA]
¡û
>W1711325377
MBEK01000028
Actinomycetota
Mycolicibacterium fortuitum [MBEK]
31725
31650
-
Asn
GTT
[ENA]
¡û
>W1711325658
MBEQ01000017
Actinomycetota
Mycobacterium sp. GA-1841 [MBEQ]
198812
198737
-
Asn
GTT
[ENA]
¡û
>W1711325722
MBER01000066
Actinomycetota
Mycolicibacterium fortuitum [MBER]
56783
56858
+
Asn
GTT
[ENA]
¡û
>W1711327037
MBGE01000200
Actinomycetota
Mycolicibacterium conceptionense [MBGE]
3572
3647
+
Asn
GTT
[ENA]
¡û
>W1711327127
MBGF01000134
Actinomycetota
Mycolicibacterium conceptionense [MBGF]
74730
74655
-
Asn
GTT
[ENA]
¡û
>W1711327131
MBGG01000020
Actinomycetota
Mycolicibacterium conceptionense [MBGG]
74748
74673
-
Asn
GTT
[ENA]
¡û
>W1711343182
MCHX01000106
Actinomycetota
Mycolicibacterium grossiae SCH [MCHX]
1326
1401
+
Asn
GTT
[ENA]
¡û
>W1711428435
MIHF01000123
Actinomycetota
Mycolicibacterium porcinum [MIHF]
16958
16883
-
Asn
GTT
[ENA]
¡û
>W1711515701
MLHV01000001
Actinomycetota
Mycobacterium syngnathidarum 24999 [MLHV]
270028
269953
-
Asn
GTT
[ENA]
¡û
>W1711708186
MSTD01000013
Actinomycetota
Mycolicibacterium porcinum [MSTD]
94199
94274
+
Asn
GTT
[ENA]
¡û
>W1711772244
MVHF01000001
Actinomycetota
Mycobacterium aquaticum RW6 [MVHF]
254706
254781
+
Asn
GTT
[ENA]
¡û
>W1711772824
MVHS01000001
Actinomycetota
Mycolicibacterium insubricum [MVHS]
130604
130679
+
Asn
GTT
[ENA]
¡û
>W1711773437
MVIG01000004
Actinomycetota
Mycolicibacterium porcinum [MVIG]
95741
95666
-
Asn
GTT
[ENA]
¡û
>C171112408
CP020809
Actinomycetota
Mycobacterium dioxanotrophicus PH-06 [CP020809]
2609847
2609922
+
Asn
GTT
-
¡û
>W131092096
AOHR01000132
Actinomycetota
Mycobacterium sp. VKM Ac-1817D [AOHR]
146639
146714
+
Asn
GTT
[ENA]
¡û
>W131226793
AUEQ01000013
Actinomycetota
Mycobacterium sp. URHD0025 [AUEQ]
27071
26996
-
Asn
GTT
[ENA]
¡û
>WENV180096821
MTBK01150830
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
364
437
+
Asn
GTT
[ENA]
¢þ
>W141037970
ALQB01000001
Actinomycetota
Mycolicibacterium fortuitum subsp. fortuitum DSM 46621 [ALQB]
61065
60990
-
Asn
GTT
[ENA]
¡û
>W141090064
AUWS01000064
Actinomycetota
Mycobacterium sp. UM_WWY [AUWS]
37139
37064
-
Asn
GTT
[ENA]
¡û
>WENV181371628
OFQV01028913
[OFQV] wastewater metagenome; WWTP Cannobio (Effluent)
445
519
+
Asn
GTT
[ENA]
¢þ
>W141261691
CCAY010000049
Actinomycetota
Mycolicibacterium farcinogenes [CCAY]
3582
3657
+
Asn
GTT
[ENA]
¡û
>W141262134
CCBG010000002
Actinomycetota
Mycolicibacterium vulneris [CCBG]
2673247
2673322
+
Asn
GTT
[ENA]
¡û
>W1910002617
ATDQ01000090
Actinomycetota
Mycolicibacterium brumae DSM 44177 [ATDQ]
65946
65873
-
Asn
GTT
[ENA]
¡û
>W1910401385
FUWC01000001
Actinomycetota
Mycolicibacterium boenickei CIP107829 [FUWC]
3704866
3704793
-
Asn
GTT
[ENA]
¡û
>W1911385799
NVQF01000106
Actinomycetota
Mycolicibacterium palauense CECT 8779 [NVQF]
9839
9912
+
Asn
GTT
[ENA]
¡û
>W1911534622
OLMG01000004
Actinomycetota
Mycolicibacterium porcinum CSURP1564 [OLMG]
190106
190033
-
Asn
GTT
[ENA]
¡û
>W1810052619
PDCN02000018
Actinomycetota
Mycolicibacterium brumae CIP1034565 [PDCN]
26441
26514
+
Asn
GTT
[ENA]
¡û
>W1810052643
PDCO01000009
Actinomycetota
Mycolicibacterium boenickei CCUG47580 [PDCO]
39256
39183
-
Asn
GTT
[ENA]
¡û
>C151061871
CP009914
Actinomycetota
Mycobacterium sp. VKM Ac-1817D [CP009914]
3980631
3980556
-
Asn
GTT
[Ensembl]
¡û
>W1510562515
CTEF01000004
Actinomycetota
Mycolicibacterium conceptionense D16 [CTEF]
401834
401759
-
Asn
GTT
[ENA]
¡û
>W1510651100
CVRX01000272
Actinomycetota
Mycolicibacterium fortuitum ATCC 6841 [CVRX]
68776
68701
-
Asn
GTT
[ENA]
¡û
>W1510651816
CVTC01001111
Actinomycetota
Mycolicibacter nonchromogenicus NCK 8460 [CVTC]
416990
416915
-
Asn
GTT
[ENA]
¡û
>W1510669528
CWKH01000001
Actinomycetota
Mycolicibacterium neworleansense type strain: ATCC 49404 [CWKH]
505793
505868
+
Asn
GTT
[ENA]
¡û
>W1511629816
LDCO01000005
Actinomycetota
Mycolicibacterium senegalense CK1 [LDCO]
263502
263427
-
Asn
GTT
[ENA]
¡û
>W1511640141
LDPU01000002
Actinomycetota
Mycolicibacterium senegalense CK2 [LDPU]
486239
486164
-
Asn
GTT
[ENA]
¡û
>W1511685478
LFOD01000001
Actinomycetota
Mycolicibacterium conceptionense MLE [LFOD]
217313
217388
+
Asn
GTT
[ENA]
¡û
>C161033221
CP011269
Actinomycetota
Mycolicibacterium fortuitum CT6 [CP011269]
3970221
3970146
-
Asn
GTT
[Ensembl]
¡û
>C161069653
CP014258
Actinomycetota
Mycolicibacterium fortuitum subsp. fortuitum DSM 46621 = ATCC 6841 [CP014258]
3971811
3971736
-
Asn
GTT
-
¡û
>W121018308
AGSZ01000035
Actinomycetota
Mycolicibacterium conceptionense JR2009 [AGSZ]
13753
13828
+
Asn
GTT
[ENA]
¡û
>W1610069977
BCSX01000055
Actinomycetota
Mycolicibacterium brisbanense [BCSX]
4191
4116
-
Asn
GTT
[ENA]
¡û
>W1610070111
BCSZ01000051
Actinomycetota
Mycolicibacterium fortuitum subsp. acetamidolyticum [BCSZ]
296003
295928
-
Asn
GTT
[ENA]
¡û
>W1610435347
FJNX01000054
Actinomycetota
Mycolicibacterium brumae [FJNX]
26436
26509
+
Asn
GTT
[ENA]
¡û
>W1610437113
FJVO01000052
Actinomycetota
Mycolicibacterium houstonense [FJVO]
38700
38625
-
Asn
GTT
[ENA]
¡û
>W1611035291
LZHU01000006
Actinomycetota
Mycolicibacterium conceptionense [LZHU]
74405
74330
-
Asn
GTT
[ENA]
¡û
>W1611035374
LZHW01000001
Actinomycetota
Mycobacterium sp. ACS4331 [LZHW]
9100
9173
+
Asn
GTT
[ENA]
¡û
>W1611035462
LZHX01000089
Actinomycetota
Mycolicibacterium conceptionense [LZHX]
74405
74330
-
Asn
GTT
[ENA]
¡û
>W1611035574
LZIA01000005
Actinomycetota
Mycolicibacterium conceptionense [LZIA]
74405
74330
-
Asn
GTT
[ENA]
¡û
>W1611035952
LZIH01000373
Actinomycetota
Mycolicibacterium fortuitum [LZIH]
45442
45367
-
Asn
GTT
[ENA]
¡û
>W1611036322
LZIP01000057
Actinomycetota
Mycolicibacterium fortuitum [LZIP]
45437
45362
-
Asn
GTT
[ENA]
¡û
>W1611036624
LZIV01000144
Actinomycetota
Mycolicibacterium fortuitum [LZIV]
37680
37755
+
Asn
GTT
[ENA]
¡û
>W1611036648
LZIW01000078
Actinomycetota
Mycolicibacterium fortuitum [LZIW]
25234
25309
+
Asn
GTT
[ENA]
¡û
>W1611037003
LZJD01000153
Actinomycetota
Mycobacterium sp. E802 [LZJD]
43131
43206
+
Asn
GTT
[ENA]
¡û
>W1611038071
LZKA01000057
Actinomycetota
Mycolicibacterium conceptionense [LZKA]
237423
237498
+
Asn
GTT
[ENA]
¡û
>W1611038623
LZKM01000039
Actinomycetota
Mycolicibacterium fortuitum [LZKM]
49749
49824
+
Asn
GTT
[ENA]
¡û
>W1611038674
LZKN01000061
Actinomycetota
Mycolicibacterium fortuitum [LZKN]
115423
115498
+
Asn
GTT
[ENA]
¡û
>W1611038726
LZKO01000074
Actinomycetota
Mycolicibacterium fortuitum [LZKO]
46936
46861
-
Asn
GTT
[ENA]
¡û
>W1611039919
LZLN01000218
Actinomycetota
Mycolicibacterium conceptionense [LZLN]
3572
3647
+
Asn
GTT
[ENA]
¡û
>W1611039932
LZLO01000006
Actinomycetota
Mycolicibacterium fortuitum [LZLO]
38702
38777
+
Asn
GTT
[ENA]
¡û
>W1611039998
LZLP01000037
Actinomycetota
Mycolicibacterium fortuitum [LZLP]
49756
49831
+
Asn
GTT
[ENA]
¡û
>W1611040505
LZLZ01000336
Actinomycetota
Mycolicibacterium fortuitum [LZLZ]
20342
20417
+
Asn
GTT
[ENA]
¡û
>W1611043076
LZSI01000188
Actinomycetota
Mycolicibacterium fortuitum [LZSI]
31659
31584
-
Asn
GTT
[ENA]
¡û
>W1611043111
LZSJ01000075
Actinomycetota
Mycolicibacterium fortuitum [LZSJ]
45399
45324
-
Asn
GTT
[ENA]
¡û
>W1611043188
LZSK01000103
Actinomycetota
Mycolicibacterium conceptionense [LZSK]
257807
257882
+
Asn
GTT
[ENA]
¡û
>W1611043325
LZSN01000093
Actinomycetota
Mycolicibacterium fortuitum [LZSN]
150335
150260
-
Asn
GTT
[ENA]
¡û
>W1611043498
LZSR01000065
Actinomycetota
Mycolicibacterium fortuitum [LZSR]
114743
114818
+
Asn
GTT
[ENA]
¡û
>W1611043573
LZSS01000217
Actinomycetota
Mycolicibacterium fortuitum [LZSS]
31296
31221
-
Asn
GTT
[ENA]
¡û
>W1611043971
LZTB01000011
Actinomycetota
Mycobacterium sp. 852013-50091_SCH5140682 [LZTB]
32914
32839
-
Asn
GTT
[ENA]
¡û
>W1611062693
MBDY01000081
Actinomycetota
Mycolicibacterium porcinum vulneris [MBDY]
34274
34199
-
Asn
GTT
[ENA]
¡û
>W1611063009
MBEF01000075
Actinomycetota
Mycolicibacterium vulneris [MBEF]
182060
182135
+
Asn
GTT
[ENA]
¡û
>W1611063064
MBEG01000073
Actinomycetota
Mycolicibacterium vulneris [MBEG]
239732
239807
+
Asn
GTT
[ENA]
¡û
>W1611063109
MBEH01000059
Actinomycetota
Mycolicibacterium vulneris [MBEH]
239788
239863
+
Asn
GTT
[ENA]
¡û
>W1710067350
BCSX01000055
Actinomycetota
Mycolicibacterium brisbanense [BCSX]
4191
4116
-
Asn
GTT
[ENA]
¡û
>W1710067484
BCSZ01000051
Actinomycetota
Mycolicibacterium fortuitum subsp. acetamidolyticum [BCSZ]
296003
295928
-
Asn
GTT
[ENA]
¡û
>W1710435083
FJNX01000054
Actinomycetota
Mycolicibacterium brumae [FJNX]
26436
26509
+
Asn
GTT
[ENA]
¡û
>W1710436741
FJVO01000052
Actinomycetota
Mycolicibacterium houstonense [FJVO]
38700
38625
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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