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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281156 (26 seq.)
>W1711371731
MDSD01000012
Gammaproteobacteria
Aeromonas caviae [MDSD]
582613
582689
+
Arg
CCT
[ENA]
¡û
>W1711504213
MKUI01000040
Gammaproteobacteria
Aeromonas sp. 62-46 [MKUI]
53642
53718
+
Arg
CCT
[ENA]
¡û
>WENV170001855
AGFT01011125
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
114
190
+
Arg
CCT
[ENA]
¢þ
>W141426524
JEMQ01000003
Gammaproteobacteria
Aeromonas sp. HZM HZM [JEMQ]
162102
162026
-
Arg
CCT
[ENA]
¡û
>C181097197
CP024198
Gammaproteobacteria
Aeromonas caviae 8LM [CP024198]
3470199
3470275
+
Arg
CCT
-
¡û
>C181121549
CP025705
Gammaproteobacteria
Aeromonas caviae R25-6 [CP025705]
2410461
2410385
-
Arg
CCT
-
¡û
>C181121641
CP025706
Gammaproteobacteria
Aeromonas caviae T25-39 [CP025706]
2769403
2769327
-
Arg
CCT
-
¡û
>C181122518
CP025777
Gammaproteobacteria
Aeromonas caviae R25-2 [CP025777]
2769922
2769998
+
Arg
CCT
-
¡û
>C181128193
CP026122
Gammaproteobacteria
Aeromonas sp. ASNIH5 [CP026122]
4229773
4229697
-
Arg
CCT
-
¡û
>C181129462
CP026226
Gammaproteobacteria
Aeromonas sp. ASNIH7 [CP026226]
951387
951463
+
Arg
CCT
-
¡û
>C181129581
CP026228
Gammaproteobacteria
Aeromonas sp. ASNIH1 [CP026228]
439279
439355
+
Arg
CCT
-
¡û
>C181213604
LS483441
Gammaproteobacteria
Aeromonas caviae NCTC12244 [LS483441]
1059602
1059526
-
Arg
CCT
-
¡û
>C191006880
AP019195
Gammaproteobacteria
Aeromonas caviae GSH8M-1 [AP019195]
3566845
3566921
+
Arg
CCT
-
¡û
>W1911420258
NXBP01000018
Gammaproteobacteria
Aeromonas caviae ZJ66-1 [NXBP]
50351
50427
+
Arg
CCT
[ENA]
¡û
>W1911420450
NXBR01000032
Gammaproteobacteria
Aeromonas caviae ZJ17-2 [NXBR]
30433
30509
+
Arg
CCT
[ENA]
¡û
>W1911420901
NXBW01000032
Gammaproteobacteria
Aeromonas caviae ZJ33-3 [NXBW]
30416
30492
+
Arg
CCT
[ENA]
¡û
>W1911683263
QKOS01000071
Gammaproteobacteria
Aeromonas caviae GEO_48_Eff_A [QKOS]
3038
3114
+
Arg
CCT
[ENA]
¡û
>W1911683441
QKOU01000072
Gammaproteobacteria
Aeromonas caviae GEO_47_Up_A [QKOU]
19663
19587
-
Arg
CCT
[ENA]
¡û
>SRA1004893
SRR006906.174778
metagenomic water samples (SRP000427)
108
32
-
Arg
CCT
[SRA]
>W1810693071
QLLA01000020
Gammaproteobacteria
Aeromonas caviae HAMBI_1972 [QLLA]
53620
53696
+
Arg
CCT
[ENA]
¡û
>W1510065004
CDBK01000110
Gammaproteobacteria
Aeromonas caviae CECT 838 [CDBK]
62788
62864
+
Arg
CCT
[ENA]
¡û
>WENV11101927
AGFT01011125
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
114
190
+
Arg
CCT
[ENA]
¡û
>W1511394820
JTBG01000005
Gammaproteobacteria
Aeromonas caviae FDAARGOS_76 [JTBG]
1350605
1350681
+
Arg
CCT
[ENA]
¡û
>W1511395004
JTBH01000001
Gammaproteobacteria
Aeromonas caviae FDAARGOS_75 [JTBH]
1929777
1929701
-
Arg
CCT
[ENA]
¡û
>W1511565292
LAFH01000018
Gammaproteobacteria
Aeromonas caviae 8LM [LAFH]
212147
212223
+
Arg
CCT
[ENA]
¡û
>W11185812
CACP01000025
Gammaproteobacteria
Aeromonas caviae Ae398 [CACP]
33663
33587
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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