This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281193 (59 seq.)
>W141075048
ASZT01000179
Bacteroidota
Sphingobacterium sp. IITKGP-BTPF85 [ASZT]
125
198
+
Met
CAT
[ENA]
¡û
>WENV183729789
PJTR01000077
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
48271
48344
+
fMet
CAT
[ENA]
¢þ
>WENV183729790
PJTR01000077
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
48391
48464
+
fMet
CAT
[ENA]
¢þ
>WENV183730930
PJTS01002194
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
4714
4641
-
fMet
CAT
[ENA]
¢þ
>WENV183730931
PJTS01002194
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
4594
4521
-
fMet
CAT
[ENA]
¢þ
>WENV183731701
PJTT01000111
[PJTT] soil metagenome; Soil (2) enriched on wood chips
48271
48344
+
fMet
CAT
[ENA]
¢þ
>WENV183731702
PJTT01000111
[PJTT] soil metagenome; Soil (2) enriched on wood chips
48391
48464
+
fMet
CAT
[ENA]
¢þ
>WENV183732396
PJTX01000102
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
15
88
+
fMet
CAT
[ENA]
¢þ
>WENV183732441
PJTX01000295
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
13274
13347
+
fMet
CAT
[ENA]
¢þ
>WENV183732556
PJTX01002035
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
15
88
+
fMet
CAT
[ENA]
¢þ
>WENV183732557
PJTX01002035
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
4348
4275
-
fMet
CAT
[ENA]
¢þ
>WENV183732660
PJTX01005067
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
231
158
-
fMet
CAT
[ENA]
¢þ
>WENV183732661
PJTX01005067
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
109
36
-
fMet
CAT
[ENA]
¢þ
>WENV183734183
PJTZ01000153
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
15
88
+
fMet
CAT
[ENA]
¢þ
>WENV183734184
PJTZ01000157
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
15
88
+
fMet
CAT
[ENA]
¢þ
>WENV183734191
PJTZ01000172
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
227
154
-
fMet
CAT
[ENA]
¢þ
>WENV183734192
PJTZ01000172
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
105
32
-
fMet
CAT
[ENA]
¢þ
>WENV183734197
PJTZ01000179
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
227
154
-
fMet
CAT
[ENA]
¢þ
>WENV183734198
PJTZ01000179
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
105
32
-
fMet
CAT
[ENA]
¢þ
>WENV183736253
PJUC01000286
[PJUC] soil metagenome; Soil enriched on filter paper
9293
9366
+
fMet
CAT
[ENA]
¢þ
>WENV183738044
PJUD01072757
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
759
686
-
fMet
CAT
[ENA]
¢þ
>WENV183740114
PJUF01000378
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
21833
21760
-
fMet
CAT
[ENA]
¢þ
>WENV183740672
PJUF01006028
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
2178
2251
+
fMet
CAT
[ENA]
¢þ
>C191157528
CP038029
Bacteroidota
Sphingobacterium psychroaquaticum SJ-25 [CP038029]
3571422
3571495
+
Met
CAT
-
¡û
>C191157529
CP038029
Bacteroidota
Sphingobacterium psychroaquaticum SJ-25 [CP038029]
3571546
3571619
+
Met
CAT
-
¡û
>C191157530
CP038029
Bacteroidota
Sphingobacterium psychroaquaticum SJ-25 [CP038029]
3571670
3571743
+
Met
CAT
-
¡û
>C191158031
CP038159
Bacteroidota
Sphingobacterium sp. CZ-2 [CP038159]
1945705
1945778
+
Met
CAT
-
¡û
>W1910377911
FUKU01000014
Bacteroidota
Sphingobacterium sp. JB170 [FUKU]
35612
35685
+
Met
CAT
[ENA]
¡û
>W1910377912
FUKU01000014
Bacteroidota
Sphingobacterium sp. JB170 [FUKU]
35733
35806
+
Met
CAT
[ENA]
¡û
>W1910378089
FUKX01000051
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
486543
486616
+
Met
CAT
[ENA]
¡û
>W1910378090
FUKX01000051
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
486664
486737
+
Met
CAT
[ENA]
¡û
>W1910378091
FUKX01000051
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
486785
486858
+
Met
CAT
[ENA]
¡û
>W1810069015
PEAZ01000035
Bacteroidota
Sphingobacterium sp. 1.A.4 [PEAZ]
41892
41965
+
Met
CAT
[ENA]
¡û
>W1810265824
PQVF01000009
Bacteroidota
Solitalea longa HR-AV [PQVF]
105775
105699
-
Met
CAT
[ENA]
¡û
>W1810265825
PQVF01000009
Bacteroidota
Solitalea longa HR-AV [PQVF]
105606
105530
-
Met
CAT
[ENA]
¡û
>W1810265826
PQVF01000009
Bacteroidota
Solitalea longa HR-AV [PQVF]
105438
105362
-
Met
CAT
[ENA]
¡û
>W1810346501
PVBQ01000016
Bacteroidota
Sphingobacterium haloxyli 5JN-11 [PVBQ]
84096
84023
-
Met
CAT
[ENA]
¡û
>W1810346502
PVBQ01000016
Bacteroidota
Sphingobacterium haloxyli 5JN-11 [PVBQ]
83976
83903
-
Met
CAT
[ENA]
¡û
>W1810346594
PVBS01000002
Bacteroidota
Sphingobacterium gobiense ACCC 05757 [PVBS]
1101345
1101272
-
Met
CAT
[ENA]
¡û
>W1810346595
PVBS01000002
Bacteroidota
Sphingobacterium gobiense ACCC 05757 [PVBS]
1101223
1101150
-
Met
CAT
[ENA]
¡û
>W1810503645
QBKH01000002
Bacteroidota
Sphingobacterium faecium DSM 11690 [QBKH]
754797
754870
+
Met
CAT
[ENA]
¡û
>W1810503646
QBKH01000002
Bacteroidota
Sphingobacterium faecium DSM 11690 [QBKH]
754918
754991
+
Met
CAT
[ENA]
¡û
>W1810503647
QBKH01000002
Bacteroidota
Sphingobacterium faecium DSM 11690 [QBKH]
755039
755112
+
Met
CAT
[ENA]
¡û
>W1810503648
QBKH01000002
Bacteroidota
Sphingobacterium faecium DSM 11690 [QBKH]
755160
755233
+
Met
CAT
[ENA]
¡û
>W1810503649
QBKH01000002
Bacteroidota
Sphingobacterium faecium DSM 11690 [QBKH]
755282
755355
+
Met
CAT
[ENA]
¡û
>C151047373
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
4514995
4514920
-
Met
CAT
[Ensembl]
¡û
>C151047374
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
4514883
4514808
-
Met
CAT
[Ensembl]
¡û
>C151047375
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
4514771
4514696
-
Met
CAT
[Ensembl]
¡û
>C151047376
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
4514659
4514584
-
Met
CAT
[Ensembl]
¡û
>C151047377
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
4514547
4514472
-
Met
CAT
[Ensembl]
¡û
>C151047378
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
4514435
4514362
-
Met
CAT
[Ensembl]
¡û
>C121011519
CP003349
Bacteroidota
Solitalea canadensis DSM 3403 [CP003349]
3759569
3759494
-
Met
CAT
[Ensembl]
¡û
>C161049119
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
616616
616691
+
Met
CAT
[Ensembl]
¡û
>C161049121
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
616874
616949
+
Met
CAT
[Ensembl]
¡û
>C161049123
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
617131
617206
+
Met
CAT
[Ensembl]
¡û
>W121017827
AGSC01000031
Bacteroidota
Solitalea canadensis DSM 3403 [AGSC]
49078
49153
+
Met
CAT
[ENA]
¡û
>W1710608367
FXAU01000008
Bacteroidota
Sphingobacterium psychroaquaticum [FXAU]
162818
162893
+
Met
CAT
[ENA]
¡û
>W1710608368
FXAU01000008
Bacteroidota
Sphingobacterium psychroaquaticum [FXAU]
162942
163017
+
Met
CAT
[ENA]
¡û
>W1710608369
FXAU01000008
Bacteroidota
Sphingobacterium psychroaquaticum [FXAU]
163066
163141
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK