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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281207 (59 seq.)
>W1711068998
LSFF01000020
Bacillota
Latilactobacillus sakei [LSFF]
225
301
+
Met
CAT
[ENA]
¡û
>W131196439
ASTI01000008
Bacillota
Latilactobacillus sakei subsp. sakei LS25 [ASTI]
147
223
+
Met
CAT
[ENA]
¡û
>W1711484743
MKDC01000037
Bacillota
Latilactobacillus sakei [MKDC]
146
222
+
Met
CAT
[ENA]
¡û
>W1711484796
MKDD01000022
Bacillota
Latilactobacillus sakei [MKDD]
18784
18708
-
Met
CAT
[ENA]
¡û
>W1711484830
MKDE01000010
Bacillota
Latilactobacillus sakei [MKDE]
864
940
+
Met
CAT
[ENA]
¡û
>W1711487512
MKGB01000033
Bacillota
Latilactobacillus sakei [MKGB]
179
255
+
Met
CAT
[ENA]
¡û
>C012612
CR936503
Bacillota
Latilactobacillus sakei subsp. sakei 23K [CR936503]
451302
451375
+
Met
CAT
[Ensembl]
¡û
>C171057553
CP017124
Bacillota
Latilactobacillus curvatus WiKim38 [CP017124]
1553477
1553401
-
Met
CAT
-
¡û
>W141228361
BALW01000016
Bacillota
Latilactobacillus sakei subsp. sakei JCM 1157 [BALW]
27444
27368
-
Met
CAT
[ENA]
¡û
>C181003642
AP017929
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 LT-13 [AP017929]
27454
27378
-
Met
CAT
-
¡û
>C181003695
AP017931
Bacillota
Latilactobacillus sakei LK-145 [AP017931]
1454637
1454561
-
Met
CAT
-
¡û
>C181044603
CP020459
Bacillota
Latilactobacillus sakei FAM18311 [CP020459]
450988
451064
+
Met
CAT
-
¡û
>C181066088
CP022474
Bacillota
Latilactobacillus curvatus MRS6 [CP022474]
1626179
1626103
-
Met
CAT
-
¡û
>C181066114
CP022474
Bacillota
Latilactobacillus curvatus MRS6 [CP022474]
743827
743754
-
Met
CAT
-
¡û
>C181066155
CP022475
Bacillota
Latilactobacillus curvatus KG6 [CP022475]
1621783
1621707
-
Met
CAT
-
¡û
>C181071466
CP022709
Bacillota
Latilactobacillus sakei WiKim0063 [CP022709]
4067
4143
+
Met
CAT
-
¡û
>C181113645
CP025136
Bacillota
Latilactobacillus sakei WiKim0072 [CP025136]
1326006
1326082
+
Met
CAT
-
¡û
>C181114103
CP025206
Bacillota
Latilactobacillus sakei WiKim0074 [CP025206]
640671
640595
-
Met
CAT
-
¡û
>C181123525
CP025839
Bacillota
Latilactobacillus sakei DS4 [CP025839]
491346
491422
+
Met
CAT
-
¡û
>C181186085
CP029966
Bacillota
Latilactobacillus curvatus ZJUNIT8 [CP029966]
1506280
1506204
-
Met
CAT
-
¡û
>C181194829
CP031003
Bacillota
Latilactobacillus curvatus TMW 1.1928 [CP031003]
1640546
1640470
-
Met
CAT
-
¡û
>C181227413
LT960777
Bacillota
Latilactobacillus sakei FLEC01 [LT960777]
472112
472188
+
Met
CAT
-
¡û
>C181227469
LT960781
Bacillota
Latilactobacillus sakei J64 [LT960781]
489978
490054
+
Met
CAT
-
¡û
>C181227532
LT960784
Bacillota
Latilactobacillus sakei [LT960784]
483459
483535
+
Met
CAT
-
¡û
>C181227593
LT960788
Bacillota
Latilactobacillus sakei MFPB16A1401 [LT960788]
493513
493589
+
Met
CAT
-
¡û
>C181227654
LT960790
Bacillota
Latilactobacillus sakei J54 [LT960790]
472475
472551
+
Met
CAT
-
¡û
>C191004201
AP018699
Bacillota
Latilactobacillus curvatus NFH-Km12 [AP018699]
1546207
1546131
-
Met
CAT
-
¡û
>C191035485
CP025476
Bacillota
Latilactobacillus curvatus IRG2 [CP025476]
427820
427896
+
Met
CAT
-
¡û
>C191040470
CP026116
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [CP026116]
3921
3997
+
Met
CAT
-
¡û
>C191092621
CP032633
Bacillota
Latilactobacillus sakei ZFM220 [CP032633]
834552
834628
+
Met
CAT
-
¡û
>C191092684
CP032635
Bacillota
Latilactobacillus sakei ZFM225 [CP032635]
520233
520309
+
Met
CAT
-
¡û
>C191092804
CP032640
Bacillota
Latilactobacillus sakei ZFM229 [CP032640]
370377
370453
+
Met
CAT
-
¡û
>C191093015
CP032652
Bacillota
Latilactobacillus sakei LZ217 [CP032652]
1326489
1326413
-
Met
CAT
-
¡û
>C191134877
CP035110
Bacillota
Latilactobacillus curvatus SRCM103465 [CP035110]
1619390
1619314
-
Met
CAT
-
¡û
>W1910751942
MKDM01000022
Bacillota
Latilactobacillus sakei RI-496 [MKDM]
4795
4719
-
Met
CAT
[ENA]
¡û
>W1910752001
MKDO01000010
Bacillota
Latilactobacillus sakei RI-500 [MKDO]
27488
27412
-
Met
CAT
[ENA]
¡û
>W1910753019
MKGG01000056
Bacillota
Latilactobacillus sakei RI-516 [MKGG]
145
221
+
Met
CAT
[ENA]
¡û
>W1911493451
OBHL01000008
Bacillota
Latilactobacillus sakei J156 [OBHL]
224
300
+
Met
CAT
[ENA]
¡û
>W1911533899
OKRC01000014
Bacillota
Latilactobacillus sakei CECT 9267 [OKRC]
27582
27506
-
Met
CAT
[ENA]
¡û
>W1911551503
OVTU01000006
Bacillota
Latilactobacillus sakei CECT 9624 [OVTU]
253
329
+
Met
CAT
[ENA]
¡û
>W1911631460
PUFE01000020
Bacillota
Latilactobacillus sakei subsp. sakei ATCC 15521 [PUFE]
782
858
+
Met
CAT
[ENA]
¡û
>W1911706060
QOSE01000022
Bacillota
Latilactobacillus sakei TMW 1.411 [QOSE]
27436
27360
-
Met
CAT
[ENA]
¡û
>WENV11100299
AEKF01000039
Food metagenome, Jonggazip commercial cabbage kimchi
126
202
+
Met
CAT
[ENA]
¡û
>W1511344748
JRFY01000151
Bacillota
Latilactobacillus sakei wikim 22 [JRFY]
214
138
-
Met
CAT
[ENA]
¡û
>W1511402308
JTJV01000136
Bacillota
Latilactobacillus curvatus NRIC0822 [JTJV]
183
259
+
Met
CAT
[ENA]
¡û
>C161093437
CP016028
Bacillota
Latilactobacillus curvatus FBA2 [CP016028]
482396
482472
+
Met
CAT
-
¡û
>C161100146
CP016602
Bacillota
Latilactobacillus curvatus WiKim52 [CP016602]
576640
576716
+
Met
CAT
[Ensembl]
¡û
>W121008316
AGBU01000098
Bacillota
Latilactobacillus curvatus CRL 705 [AGBU]
127
203
+
Met
CAT
[ENA]
¡û
>W1610031740
AYZB01000052
Bacillota
Latilactobacillus graminis DSM 20719 [AYZB]
20679
20603
-
Met
CAT
[ENA]
¡û
>W1610033941
AZDI01000009
Bacillota
Dellaglioa algida DSM 15638 [AZDI]
153
228
+
Met
CAT
[ENA]
¡û
>W1610034178
AZDN01000033
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 [AZDN]
644
568
-
Met
CAT
[ENA]
¡û
>W1610036405
AZFG01000065
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [AZFG]
183
259
+
Met
CAT
[ENA]
¡û
>W1610045567
BBBQ01000058
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [BBBQ]
127
203
+
Met
CAT
[ENA]
¡û
>W1610909568
LSFF01000020
Bacillota
Latilactobacillus sakei [LSFF]
225
301
+
Met
CAT
[ENA]
¡û
>W1710028667
AYZB01000052
Bacillota
Latilactobacillus graminis DSM 20719 [AYZB]
20679
20603
-
Met
CAT
[ENA]
¡û
>W1710031068
AZDI01000009
Bacillota
Dellaglioa algida DSM 15638 [AZDI]
153
228
+
Met
CAT
[ENA]
¡û
>W1710031305
AZDN01000033
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 [AZDN]
644
568
-
Met
CAT
[ENA]
¡û
>W1710033444
AZFG01000065
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [AZFG]
183
259
+
Met
CAT
[ENA]
¡û
>W1710042408
BBBQ01000058
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [BBBQ]
127
203
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK